Wall clock time and date at job start Tue Mar 31 2020 03:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52996 * 109.46747 * 243.03055 * 3 2 1 5 5 N 1.46503 * 109.47062 * 180.02562 * 4 3 2 6 6 C 1.46497 * 120.00030 * 274.87771 * 5 4 3 7 7 C 1.50703 * 109.47035 * 269.99739 * 6 5 4 8 8 H 1.07999 * 119.99906 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00325 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99452 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00391 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47118 * 89.99590 * 11 9 7 13 13 H 1.48503 * 109.47255 * 209.99786 * 11 9 7 14 14 H 1.48501 * 109.46836 * 329.99823 * 11 9 7 15 15 C 1.34773 * 120.00097 * 94.87279 * 5 4 3 16 16 O 1.21601 * 120.00146 * 185.57350 * 15 5 4 17 17 C 1.47437 * 120.00216 * 5.57395 * 15 5 4 18 18 C 1.38046 * 126.41148 * 54.43488 * 17 15 5 19 19 N 1.34251 * 107.41634 * 180.22659 * 18 17 15 20 20 H 0.97001 * 125.75546 * 179.76828 * 19 18 17 21 21 N 1.39939 * 108.49387 * 359.64780 * 19 18 17 22 22 C 1.30451 * 108.89208 * 0.36515 * 21 19 18 23 23 N 1.48008 * 125.98641 * 179.78540 * 22 21 19 24 24 O 1.21796 * 119.99699 * 179.97438 * 23 22 21 25 25 O 1.21799 * 120.00092 * 359.97438 * 23 22 21 26 26 H 1.08998 * 109.46894 * 123.03400 * 3 2 1 27 27 H 1.09002 * 109.47323 * 3.02768 * 3 2 1 28 28 H 1.09002 * 109.47520 * 59.99845 * 4 3 2 29 29 H 1.09005 * 109.47431 * 300.00133 * 4 3 2 30 30 H 1.09001 * 109.47374 * 29.99142 * 6 5 4 31 31 H 1.08998 * 109.47593 * 150.00103 * 6 5 4 32 32 H 0.97008 * 119.99428 * 179.97438 * 10 9 7 33 33 H 1.08006 * 126.29264 * 359.97218 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.6551 1.2856 5 7 4.5827 0.6563 1.2854 6 6 5.3162 -0.5187 1.7623 7 6 5.5675 -0.3874 3.2424 8 1 5.2163 0.4844 3.7745 9 6 6.2467 -1.3796 3.9171 10 7 6.6748 -2.4409 3.2689 11 14 6.5576 -1.2172 5.7518 12 1 5.4284 -1.8246 6.5009 13 1 7.8189 -1.9174 6.1041 14 1 6.6726 0.2196 6.1091 15 6 5.2556 1.7384 0.8464 16 8 6.4673 1.7033 0.7505 17 6 4.5226 2.9648 0.4824 18 6 3.6331 3.6552 1.2810 19 7 3.1878 4.7048 0.5721 20 1 2.5478 5.3658 0.8793 21 7 3.8049 4.6862 -0.6837 22 6 4.5989 3.6532 -0.7489 23 7 5.4336 3.2698 -1.9095 24 8 6.1388 2.2785 -1.8513 25 8 5.4152 3.9455 -2.9227 26 1 2.9711 0.5610 -0.8615 27 1 2.9719 -1.0254 -0.0543 28 1 2.7545 0.0948 2.1472 29 1 2.7538 1.6812 1.3400 30 1 4.7278 -1.4163 1.5720 31 1 6.2686 -0.5903 1.2371 32 1 7.1530 -3.1388 3.7436 33 1 3.3449 3.3962 2.2891 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548412717.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:21 Heat of formation + Delta-G solvation = 60.316681 kcal Electronic energy + Delta-G solvation = -23352.699221 eV Core-core repulsion = 19611.933528 eV Total energy + Delta-G solvation = -3740.765693 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.096 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.66452 -42.64637 -40.40568 -38.05694 -37.77782 -36.71572 -34.82174 -33.80613 -32.26012 -32.18149 -29.13925 -28.39221 -25.58383 -25.35275 -23.57986 -22.92236 -21.16021 -19.77716 -19.23599 -18.97166 -18.88232 -18.74901 -18.29733 -17.76441 -17.10927 -16.42079 -16.04722 -15.80094 -15.69060 -15.12098 -14.77634 -14.34865 -14.08159 -13.67386 -13.58463 -13.20898 -12.98109 -12.97165 -12.81384 -12.72019 -12.57493 -12.45168 -12.39596 -12.13371 -12.00678 -11.63565 -11.61217 -10.94318 -10.52838 -10.36651 -9.48459 -8.11075 -6.23364 -1.26602 -0.36232 0.16037 0.69829 1.46262 1.47186 1.49724 1.57933 1.61047 1.76086 1.89079 2.20629 2.49784 2.92967 3.06077 3.21833 3.40071 3.67813 3.86560 4.01842 4.07096 4.24151 4.43406 4.77607 4.96767 4.98571 5.14713 5.32574 5.43474 5.63904 5.84524 5.91082 6.17186 6.34280 6.52008 6.66376 6.86577 7.32192 7.49547 8.96243 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.013788 B = 0.005508 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.256281 B = 5082.354753 C = 5853.172179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C 0.245 3.755 3 C -0.042 4.042 4 C 0.112 3.888 5 N -0.585 5.585 6 C 0.259 3.741 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.009 3.991 10 N -0.928 5.928 11 Si 0.960 3.040 12 H -0.267 1.267 13 H -0.293 1.293 14 H -0.268 1.268 15 C 0.579 3.421 16 O -0.559 6.559 17 C -0.243 4.243 18 C 0.152 3.848 19 N -0.379 5.379 20 H 0.484 0.516 21 N -0.220 5.220 22 C 0.146 3.854 23 N 0.050 4.950 24 O -0.151 6.151 25 O -0.126 6.126 26 H 0.110 0.890 27 H 0.122 0.878 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.038 0.962 31 H 0.005 0.995 32 H 0.264 0.736 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.834 13.466 -1.654 18.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.158 5.158 2 C -0.072 4.072 3 C -0.083 4.083 4 C -0.012 4.012 5 N -0.315 5.315 6 C 0.139 3.861 7 C -0.575 4.575 8 H 0.085 0.915 9 C -0.190 4.190 10 N -0.568 5.568 11 Si 0.785 3.215 12 H -0.193 1.193 13 H -0.219 1.219 14 H -0.192 1.192 15 C 0.365 3.635 16 O -0.436 6.436 17 C -0.260 4.260 18 C 0.000 4.000 19 N -0.097 5.097 20 H 0.339 0.661 21 N -0.055 5.055 22 C -0.098 4.098 23 N 0.573 4.427 24 O -0.361 6.361 25 O -0.348 6.348 26 H 0.128 0.872 27 H 0.140 0.860 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.056 0.944 31 H 0.023 0.977 32 H 0.073 0.927 33 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -13.571 14.363 -1.763 19.838 hybrid contribution 1.383 -0.832 0.814 1.807 sum -12.188 13.531 -0.949 18.236 Atomic orbital electron populations 1.81251 1.13955 1.10566 1.10006 1.28997 0.94729 0.91657 0.91845 1.19777 0.80596 1.06443 1.01524 1.21672 0.78996 1.03444 0.97108 1.47889 1.06738 1.15369 1.61476 1.18899 0.91593 0.82365 0.93254 1.21764 1.36246 1.05207 0.94285 0.91483 1.25755 0.95325 0.95049 1.02845 1.70053 1.39077 1.09817 1.37849 0.85532 0.77528 0.78295 0.80126 1.19257 1.21882 1.19237 1.17373 0.86214 0.82674 0.77246 1.90824 1.15796 1.83272 1.53697 1.20188 1.08832 1.02935 0.94012 1.23967 0.90692 0.85612 0.99686 1.46123 1.33501 1.22860 1.07220 0.66111 1.77082 1.09633 1.16328 1.02408 1.22482 1.00106 0.98532 0.88640 1.42496 0.99476 1.00197 1.00497 1.94788 1.36870 1.16021 1.88423 1.94529 1.69791 1.51059 1.19411 0.87184 0.85971 0.87890 0.87530 0.94381 0.97715 0.92736 0.72228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -12.65 18.54 20.01 0.37 -12.28 16 2 C 0.25 5.23 15.43 89.44 1.38 6.61 16 3 C -0.04 -0.82 6.03 28.79 0.17 -0.65 16 4 C 0.11 2.40 5.30 86.38 0.46 2.86 16 5 N -0.58 -19.69 2.46 -830.03 -2.04 -21.72 16 6 C 0.26 11.89 5.23 85.63 0.45 12.34 16 7 C -0.54 -26.65 9.39 25.60 0.24 -26.41 16 8 H 0.07 3.14 7.81 -2.91 -0.02 3.11 16 9 C 0.01 0.49 5.46 84.65 0.46 0.95 16 10 N -0.93 -52.31 13.29 21.45 0.28 -52.03 16 11 Si 0.96 41.02 29.54 68.60 2.03 43.05 16 12 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 13 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 15 C 0.58 20.93 6.71 86.67 0.58 21.52 16 16 O -0.56 -26.98 15.38 12.81 0.20 -26.78 16 17 C -0.24 -6.14 5.04 -20.15 -0.10 -6.24 16 18 C 0.15 1.78 9.89 84.28 0.83 2.61 16 19 N -0.38 -3.39 7.29 -56.32 -0.41 -3.80 16 20 H 0.48 -0.63 8.96 -213.42 -1.91 -2.54 16 21 N -0.22 -4.54 12.60 -48.75 -0.61 -5.15 16 22 C 0.15 4.05 8.20 130.80 1.07 5.12 16 23 N 0.05 1.72 4.45 -48.78 -0.22 1.50 16 24 O -0.15 -6.01 17.02 24.45 0.42 -5.59 16 25 O -0.13 -4.15 19.23 18.89 0.36 -3.79 16 26 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.10 2.18 8.11 -2.39 -0.02 2.16 16 29 H 0.11 1.46 4.68 -2.38 -0.01 1.44 16 30 H 0.04 1.73 8.07 -2.39 -0.02 1.71 16 31 H 0.00 0.26 7.35 -2.39 -0.02 0.24 16 32 H 0.26 14.19 8.31 -92.70 -0.77 13.42 16 33 H 0.26 0.55 7.78 -2.91 -0.02 0.53 16 Total: -1.00 -81.01 315.14 5.21 -75.80 By element: Atomic # 1 Polarization: -7.20 SS G_CDS: -0.71 Total: -7.92 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 5.55 Total: 18.71 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -2.62 Total: -93.47 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: 0.98 Total: -36.16 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -81.01 5.21 -75.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548412717.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.115 kcal (2) G-P(sol) polarization free energy of solvation -81.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds