Wall clock time and date at job start Tue Mar 31 2020 02:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46504 * 119.99746 * 2 1 4 4 C 1.50701 * 109.46969 * 269.99551 * 3 2 1 5 5 H 1.08003 * 120.00369 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00108 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99931 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00257 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47210 * 60.00097 * 8 6 4 10 10 H 1.48498 * 109.47093 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47031 * 300.00220 * 8 6 4 12 12 C 1.38624 * 120.00322 * 179.97438 * 2 1 3 13 13 C 1.39174 * 120.48560 * 5.25646 * 12 2 1 14 14 C 1.39127 * 118.26965 * 180.28146 * 13 12 2 15 15 N 1.38633 * 120.48138 * 179.73878 * 14 13 12 16 16 C 1.47436 * 111.00087 * 58.88447 * 15 14 13 17 17 C 1.54320 * 107.23548 * 123.25774 * 16 15 14 18 18 C 1.55258 * 103.08770 * 22.19958 * 17 16 15 19 19 C 1.47849 * 110.99454 * 179.72401 * 15 14 13 20 20 H 1.08994 * 110.37609 * 332.57882 * 19 15 14 21 21 C 1.52999 * 110.37217 * 94.80560 * 19 15 14 22 22 O 1.42903 * 109.47256 * 63.44874 * 21 19 15 23 23 N 1.33193 * 119.02996 * 359.46431 * 14 13 12 24 24 C 1.31730 * 120.88075 * 0.27782 * 23 14 13 25 25 N 1.31758 * 121.91308 * 359.97438 * 24 23 14 26 26 H 1.08998 * 109.47191 * 270.00321 * 1 2 3 27 27 H 1.09006 * 109.47393 * 30.00062 * 1 2 3 28 28 H 1.08998 * 109.46900 * 149.99860 * 1 2 3 29 29 H 1.08994 * 109.47162 * 29.99698 * 3 2 1 30 30 H 1.08998 * 109.47002 * 150.00403 * 3 2 1 31 31 H 0.97003 * 120.00365 * 179.97438 * 7 6 4 32 32 H 1.08001 * 120.86162 * 0.04408 * 13 12 2 33 33 H 1.09006 * 109.88835 * 242.66121 * 16 15 14 34 34 H 1.08997 * 109.89364 * 3.68283 * 16 15 14 35 35 H 1.09002 * 110.70859 * 140.66600 * 17 16 15 36 36 H 1.08999 * 110.70143 * 263.89855 * 17 16 15 37 37 H 1.09002 * 111.09531 * 206.39059 * 18 17 16 38 38 H 1.09003 * 110.94483 * 82.52814 * 18 17 16 39 39 H 1.08997 * 109.47286 * 303.44434 * 21 19 15 40 40 H 1.09008 * 109.47201 * 183.44214 * 21 19 15 41 41 H 0.96700 * 114.00311 * 180.02562 * 22 21 19 42 42 H 1.08005 * 119.04238 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2418 6 6 3.1259 2.8780 -1.6728 7 7 3.5532 3.6182 -0.6733 8 14 3.4367 3.4175 -3.4340 9 1 2.1390 3.5947 -4.1338 10 1 4.1793 4.7035 -3.4340 11 1 4.2395 2.3829 -4.1343 12 6 2.1581 -1.2005 0.0005 13 6 1.4769 -2.4092 -0.1088 14 6 2.2180 -3.5866 -0.0974 15 7 1.5860 -4.8163 -0.1980 16 6 0.8086 -4.9102 -1.4472 17 6 1.3225 -6.1470 -2.2138 18 6 1.9699 -7.0091 -1.0966 19 6 2.5686 -5.9207 -0.1709 20 1 3.5305 -5.5824 -0.5558 21 6 2.7253 -6.4594 1.2525 22 8 1.4850 -7.0185 1.6896 23 7 3.5440 -3.5147 0.0062 24 6 4.1525 -2.3504 0.1023 25 7 3.4860 -1.2138 0.1001 26 1 -0.3633 0.0001 1.0276 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6083 2.0284 0.5138 30 1 3.1498 1.1385 0.5138 31 1 4.0300 4.4442 -0.8505 32 1 0.4007 -2.4327 -0.1963 33 1 -0.2501 -5.0302 -1.2170 34 1 0.9581 -4.0115 -2.0455 35 1 0.4959 -6.6806 -2.6830 36 1 2.0671 -5.8585 -2.9557 37 1 2.7523 -7.6516 -1.5005 38 1 1.2165 -7.5966 -0.5718 39 1 3.0124 -5.6462 1.9192 40 1 3.4962 -7.2300 1.2666 41 1 1.5105 -7.3797 2.5862 42 1 5.2291 -2.3268 0.1853 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590078369.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:45 Heat of formation + Delta-G solvation = 26.960492 kcal Electronic energy + Delta-G solvation = -23775.716922 eV Core-core repulsion = 20370.596896 eV Total energy + Delta-G solvation = -3405.120026 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.78063 -38.95742 -36.48919 -36.13985 -33.15339 -32.76865 -31.19931 -30.23797 -29.42707 -27.75616 -25.71249 -25.26564 -23.41544 -23.09603 -21.47679 -20.77619 -19.71339 -17.88164 -17.01279 -16.84905 -16.37616 -15.93832 -15.24291 -14.86884 -14.71606 -14.52834 -14.38658 -14.01604 -13.62143 -13.45233 -13.27797 -13.16929 -12.84459 -12.15790 -12.14388 -12.02682 -11.61774 -11.37948 -11.24211 -10.98103 -10.84415 -10.77132 -10.62291 -10.53273 -10.15284 -9.98103 -9.94435 -9.69484 -9.36176 -8.50473 -8.41650 -8.19250 -7.07410 -6.04406 -4.10893 1.68906 2.04923 3.29598 3.34146 3.36672 3.56258 3.84242 4.24482 4.40258 4.41866 4.53700 4.67675 4.85797 4.89839 5.12921 5.21604 5.27502 5.31986 5.37972 5.50491 5.54426 5.64080 5.71350 5.74033 5.80695 5.83337 5.91277 5.93068 5.97630 6.02543 6.22639 6.25783 6.61541 6.69740 6.94656 7.35469 7.47507 7.62870 7.64712 7.83958 8.11967 8.21669 8.25210 8.90331 9.03710 9.53424 11.01648 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024480 B = 0.003780 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.494945 B = 7405.496387 C = 7545.852835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.578 5.578 3 C 0.250 3.750 4 C -0.525 4.525 5 H 0.054 0.946 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.461 3.539 13 C -0.324 4.324 14 C 0.366 3.634 15 N -0.457 5.457 16 C 0.053 3.947 17 C -0.141 4.141 18 C -0.124 4.124 19 C 0.075 3.925 20 H 0.104 0.896 21 C 0.096 3.904 22 O -0.563 6.563 23 N -0.618 5.618 24 C 0.352 3.648 25 N -0.570 5.570 26 H 0.045 0.955 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.030 0.970 30 H 0.053 0.947 31 H 0.264 0.736 32 H 0.133 0.867 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.048 0.952 40 H 0.047 0.953 41 H 0.371 0.629 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.199 -19.716 1.622 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.285 5.285 3 C 0.131 3.869 4 C -0.564 4.564 5 H 0.072 0.928 6 C -0.139 4.139 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.203 1.203 12 C 0.217 3.783 13 C -0.356 4.356 14 C 0.130 3.870 15 N -0.175 5.175 16 C -0.073 4.073 17 C -0.179 4.179 18 C -0.162 4.162 19 C -0.032 4.032 20 H 0.121 0.879 21 C 0.018 3.982 22 O -0.367 6.367 23 N -0.345 5.345 24 C 0.060 3.940 25 N -0.295 5.295 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.151 0.849 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.217 0.783 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -3.877 -19.131 1.549 19.581 hybrid contribution 0.007 0.444 -0.999 1.093 sum -3.869 -18.687 0.550 19.092 Atomic orbital electron populations 1.21639 0.80000 1.02647 1.00591 1.47079 1.04927 1.04614 1.71902 1.19387 0.92696 0.77394 0.97442 1.21381 1.36594 1.06269 0.92204 0.92772 1.24901 0.95382 0.96324 0.97276 1.69920 1.38296 1.14340 1.30704 0.86586 0.78335 0.77837 0.84801 1.20331 1.21134 1.20275 1.18368 0.88218 0.86126 0.85565 1.21393 1.01398 0.91421 1.21410 1.19688 0.88296 0.89667 0.89360 1.60396 1.22583 1.00056 1.34423 1.22860 0.98549 0.98474 0.87368 1.22800 1.00903 0.96228 0.97968 1.22734 1.00638 0.97236 0.95559 1.22718 0.96373 0.89283 0.94832 0.87860 1.21964 0.85237 0.95950 0.95038 1.86528 1.34435 1.80408 1.35365 1.68131 1.09067 1.30563 1.26780 1.24344 0.99984 0.81650 0.88004 1.68118 1.07174 1.30964 1.23205 0.93607 0.90480 0.92224 0.95217 0.92911 0.92654 0.84947 0.89729 0.91627 0.90347 0.91295 0.90878 0.89491 0.93356 0.93524 0.78332 0.79741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.62 10.31 59.84 0.62 2.23 16 2 N -0.58 -12.58 2.96 -183.00 -0.54 -13.12 16 3 C 0.25 6.46 5.23 -5.19 -0.03 6.44 16 4 C -0.53 -14.69 9.39 -34.44 -0.32 -15.01 16 5 H 0.05 1.53 7.81 -52.48 -0.41 1.12 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 7 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.46 9.78 7.38 -154.71 -1.14 8.64 16 13 C -0.32 -5.91 8.26 -38.90 -0.32 -6.24 16 14 C 0.37 6.26 6.17 -154.70 -0.96 5.31 16 15 N -0.46 -6.64 4.80 -162.45 -0.78 -7.42 16 16 C 0.05 0.66 6.47 -2.84 -0.02 0.65 16 17 C -0.14 -1.43 6.94 -24.84 -0.17 -1.60 16 18 C -0.12 -1.27 6.45 -24.53 -0.16 -1.43 16 19 C 0.08 0.95 2.50 -66.18 -0.17 0.78 16 20 H 0.10 1.42 6.60 -51.93 -0.34 1.08 16 21 C 0.10 1.09 7.00 37.16 0.26 1.35 16 22 O -0.56 -6.21 12.45 -35.23 -0.44 -6.65 16 23 N -0.62 -10.68 8.32 -13.88 -0.12 -10.79 16 24 C 0.35 6.44 12.28 -92.24 -1.13 5.30 16 25 N -0.57 -12.46 9.23 -13.88 -0.13 -12.59 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 28 H 0.06 0.88 6.04 -51.93 -0.31 0.57 16 29 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 30 H 0.05 1.50 7.33 -51.93 -0.38 1.12 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.13 2.18 6.09 -52.49 -0.32 1.86 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.89 7.14 -51.93 -0.37 0.52 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.94 7.11 -51.93 -0.37 0.57 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 41 H 0.37 2.46 9.12 45.56 0.42 2.88 16 42 H 0.19 2.74 8.06 -52.48 -0.42 2.32 16 LS Contribution 342.51 15.07 5.16 5.16 Total: -1.00 -32.74 342.51 -10.21 -42.95 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.45 Total: 3.14 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: -3.64 Total: 8.10 kcal Atomic # 7 Polarization: -68.53 SS G_CDS: -0.83 Total: -69.36 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.44 Total: -6.65 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.74 -10.21 -42.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590078369.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.909 kcal (2) G-P(sol) polarization free energy of solvation -32.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds