Wall clock time and date at job start Tue Mar 31 2020 02:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46504 * 119.99746 * 2 1 4 4 C 1.50701 * 109.46969 * 269.99551 * 3 2 1 5 5 H 1.08003 * 120.00369 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00108 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99931 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00257 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47210 * 60.00097 * 8 6 4 10 10 H 1.48498 * 109.47093 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47031 * 300.00220 * 8 6 4 12 12 C 1.38624 * 120.00322 * 179.97438 * 2 1 3 13 13 C 1.39174 * 120.48560 * 5.25646 * 12 2 1 14 14 C 1.39127 * 118.26965 * 180.28146 * 13 12 2 15 15 N 1.38633 * 120.48138 * 179.73878 * 14 13 12 16 16 C 1.47436 * 111.00087 * 58.88447 * 15 14 13 17 17 C 1.54320 * 107.23548 * 123.25774 * 16 15 14 18 18 C 1.55258 * 103.08770 * 22.19958 * 17 16 15 19 19 C 1.47849 * 110.99454 * 179.72401 * 15 14 13 20 20 H 1.08994 * 110.37609 * 332.57882 * 19 15 14 21 21 C 1.52999 * 110.37217 * 94.80560 * 19 15 14 22 22 O 1.42903 * 109.47256 * 63.44874 * 21 19 15 23 23 N 1.33193 * 119.02996 * 359.46431 * 14 13 12 24 24 C 1.31730 * 120.88075 * 0.27782 * 23 14 13 25 25 N 1.31758 * 121.91308 * 359.97438 * 24 23 14 26 26 H 1.08998 * 109.47191 * 270.00321 * 1 2 3 27 27 H 1.09006 * 109.47393 * 30.00062 * 1 2 3 28 28 H 1.08998 * 109.46900 * 149.99860 * 1 2 3 29 29 H 1.08994 * 109.47162 * 29.99698 * 3 2 1 30 30 H 1.08998 * 109.47002 * 150.00403 * 3 2 1 31 31 H 0.97003 * 120.00365 * 179.97438 * 7 6 4 32 32 H 1.08001 * 120.86162 * 0.04408 * 13 12 2 33 33 H 1.09006 * 109.88835 * 242.66121 * 16 15 14 34 34 H 1.08997 * 109.89364 * 3.68283 * 16 15 14 35 35 H 1.09002 * 110.70859 * 140.66600 * 17 16 15 36 36 H 1.08999 * 110.70143 * 263.89855 * 17 16 15 37 37 H 1.09002 * 111.09531 * 206.39059 * 18 17 16 38 38 H 1.09003 * 110.94483 * 82.52814 * 18 17 16 39 39 H 1.08997 * 109.47286 * 303.44434 * 21 19 15 40 40 H 1.09008 * 109.47201 * 183.44214 * 21 19 15 41 41 H 0.96700 * 114.00311 * 180.02562 * 22 21 19 42 42 H 1.08005 * 119.04238 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2418 6 6 3.1259 2.8780 -1.6728 7 7 3.5532 3.6182 -0.6733 8 14 3.4367 3.4175 -3.4340 9 1 2.1390 3.5947 -4.1338 10 1 4.1793 4.7035 -3.4340 11 1 4.2395 2.3829 -4.1343 12 6 2.1581 -1.2005 0.0005 13 6 1.4769 -2.4092 -0.1088 14 6 2.2180 -3.5866 -0.0974 15 7 1.5860 -4.8163 -0.1980 16 6 0.8086 -4.9102 -1.4472 17 6 1.3225 -6.1470 -2.2138 18 6 1.9699 -7.0091 -1.0966 19 6 2.5686 -5.9207 -0.1709 20 1 3.5305 -5.5824 -0.5558 21 6 2.7253 -6.4594 1.2525 22 8 1.4850 -7.0185 1.6896 23 7 3.5440 -3.5147 0.0062 24 6 4.1525 -2.3504 0.1023 25 7 3.4860 -1.2138 0.1001 26 1 -0.3633 0.0001 1.0276 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6083 2.0284 0.5138 30 1 3.1498 1.1385 0.5138 31 1 4.0300 4.4442 -0.8505 32 1 0.4007 -2.4327 -0.1963 33 1 -0.2501 -5.0302 -1.2170 34 1 0.9581 -4.0115 -2.0455 35 1 0.4959 -6.6806 -2.6830 36 1 2.0671 -5.8585 -2.9557 37 1 2.7523 -7.6516 -1.5005 38 1 1.2165 -7.5966 -0.5718 39 1 3.0124 -5.6462 1.9192 40 1 3.4962 -7.2300 1.2666 41 1 1.5105 -7.3797 2.5862 42 1 5.2291 -2.3268 0.1853 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590078369.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:45 Heat of formation + Delta-G solvation = 5.450146 kcal Electronic energy + Delta-G solvation = -23776.649680 eV Core-core repulsion = 20370.596896 eV Total energy + Delta-G solvation = -3406.052784 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.10667 -40.13761 -37.92618 -37.16378 -34.87038 -34.36169 -32.62154 -31.22783 -30.83175 -29.45847 -27.35874 -26.20932 -25.06806 -24.57361 -22.80065 -21.85116 -20.92178 -19.00180 -18.69846 -18.20060 -18.04051 -16.93453 -16.66712 -16.50115 -16.24062 -15.92095 -15.56786 -15.27382 -14.93386 -14.80063 -14.61540 -14.20885 -14.01283 -13.88707 -13.35342 -13.19763 -13.10108 -12.95825 -12.73141 -12.56227 -12.23319 -12.16593 -12.08000 -11.73812 -11.62075 -11.51033 -11.30619 -10.92905 -10.78579 -10.61690 -9.96703 -9.44086 -8.74390 -8.14267 -6.33864 0.27537 0.56478 1.36866 1.39539 1.47385 2.12938 2.40034 2.55900 3.09087 3.10323 3.34528 3.44175 3.57739 3.78300 3.87943 4.04197 4.15162 4.26646 4.33162 4.44483 4.45447 4.56068 4.58506 4.63744 4.68308 4.71322 4.88273 4.93520 4.95752 4.98609 5.02247 5.10197 5.19728 5.34217 5.46929 5.57386 5.68262 5.98604 6.10231 6.15327 6.42025 6.69912 6.78154 6.99980 7.34552 7.55045 8.86583 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024480 B = 0.003780 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.494945 B = 7405.496387 C = 7545.852835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.594 5.594 3 C 0.270 3.730 4 C -0.537 4.537 5 H 0.046 0.954 6 C 0.014 3.986 7 N -0.926 5.926 8 Si 0.963 3.037 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.439 3.561 13 C -0.324 4.324 14 C 0.368 3.632 15 N -0.461 5.461 16 C 0.048 3.952 17 C -0.134 4.134 18 C -0.113 4.113 19 C 0.066 3.934 20 H 0.091 0.909 21 C 0.101 3.899 22 O -0.576 6.576 23 N -0.609 5.609 24 C 0.348 3.652 25 N -0.614 5.614 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.014 0.986 30 H 0.018 0.982 31 H 0.267 0.733 32 H 0.150 0.850 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.101 0.899 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.026 0.974 40 H 0.072 0.928 41 H 0.390 0.610 42 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.882 -22.015 0.440 22.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.303 5.303 3 C 0.148 3.852 4 C -0.576 4.576 5 H 0.064 0.936 6 C -0.186 4.186 7 N -0.565 5.565 8 Si 0.787 3.213 9 H -0.191 1.191 10 H -0.203 1.203 11 H -0.203 1.203 12 C 0.197 3.803 13 C -0.355 4.355 14 C 0.131 3.869 15 N -0.178 5.178 16 C -0.077 4.077 17 C -0.173 4.173 18 C -0.151 4.151 19 C -0.041 4.041 20 H 0.109 0.891 21 C 0.023 3.977 22 O -0.383 6.383 23 N -0.336 5.336 24 C 0.057 3.943 25 N -0.341 5.341 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.032 0.968 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.167 0.833 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.239 0.761 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -4.585 -21.492 0.380 21.979 hybrid contribution 0.213 0.994 -0.551 1.156 sum -4.373 -20.498 -0.171 20.960 Atomic orbital electron populations 1.21809 0.77472 1.03531 1.02005 1.46975 1.06406 1.03504 1.73383 1.18803 0.91399 0.79056 0.95895 1.21594 1.36691 1.06402 0.92864 0.93606 1.25742 0.95010 0.96340 1.01478 1.70035 1.38893 1.14762 1.32839 0.85548 0.78591 0.77438 0.79675 1.19088 1.20286 1.20319 1.18654 0.88456 0.86711 0.86433 1.21472 1.02171 0.90642 1.21227 1.19998 0.88204 0.90590 0.88075 1.60465 1.22769 0.99340 1.35251 1.22990 0.99042 0.99107 0.86585 1.22803 1.01632 0.95173 0.97652 1.22700 1.01017 0.96565 0.94862 1.22874 0.95485 0.89389 0.96332 0.89094 1.21878 0.86052 0.96025 0.93764 1.86468 1.34331 1.80449 1.37074 1.68262 1.09298 1.29802 1.26209 1.24888 1.01114 0.81174 0.87165 1.68092 1.08157 1.32899 1.24921 0.91871 0.90973 0.89887 0.96769 0.96355 0.92427 0.83282 0.88476 0.93006 0.88008 0.91431 0.88881 0.89547 0.95586 0.90995 0.76144 0.77142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.18 10.31 127.77 1.32 4.50 16 2 N -0.59 -26.46 2.96 -732.88 -2.17 -28.63 16 3 C 0.27 14.53 5.23 85.63 0.45 14.98 16 4 C -0.54 -30.73 9.39 25.60 0.24 -30.49 16 5 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 6 C 0.01 0.77 5.46 84.66 0.46 1.23 16 7 N -0.93 -55.34 13.29 21.45 0.28 -55.06 16 8 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 9 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 C 0.44 18.97 7.38 132.97 0.98 19.95 16 13 C -0.32 -11.65 8.26 22.71 0.19 -11.47 16 14 C 0.37 12.30 6.17 132.95 0.82 13.12 16 15 N -0.46 -12.61 4.80 -667.86 -3.21 -15.82 16 16 C 0.05 1.09 6.47 86.65 0.56 1.65 16 17 C -0.13 -2.32 6.94 31.82 0.22 -2.10 16 18 C -0.11 -1.97 6.45 32.02 0.21 -1.77 16 19 C 0.07 1.52 2.50 45.39 0.11 1.64 16 20 H 0.09 2.35 6.60 -2.39 -0.02 2.33 16 21 C 0.10 2.09 7.00 71.98 0.50 2.59 16 22 O -0.58 -11.32 12.45 -148.98 -1.86 -13.17 16 23 N -0.61 -20.72 8.32 -197.84 -1.65 -22.36 16 24 C 0.35 12.78 12.28 180.91 2.22 15.00 16 25 N -0.61 -27.62 9.23 -197.82 -1.82 -29.45 16 26 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.07 2.46 8.07 -2.38 -0.02 2.45 16 28 H 0.08 2.36 6.04 -2.39 -0.01 2.35 16 29 H 0.01 0.80 8.07 -2.39 -0.02 0.78 16 30 H 0.02 1.10 7.33 -2.39 -0.02 1.08 16 31 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.15 4.71 6.09 -2.91 -0.02 4.69 16 33 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.05 1.32 7.14 -2.39 -0.02 1.31 16 35 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 1.56 7.11 -2.39 -0.02 1.55 16 39 H 0.03 0.64 8.14 -2.39 -0.02 0.63 16 40 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.39 4.25 9.12 -74.06 -0.68 3.58 16 42 H 0.21 6.23 8.06 -2.91 -0.02 6.21 16 Total: -1.00 -71.67 342.51 0.24 -71.43 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.35 Total: 17.49 kcal Atomic # 6 Polarization: 20.55 SS G_CDS: 8.29 Total: 28.84 kcal Atomic # 7 Polarization: -142.75 SS G_CDS: -8.57 Total: -151.32 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -1.86 Total: -13.17 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -71.67 0.24 -71.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590078369.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.876 kcal (2) G-P(sol) polarization free energy of solvation -71.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds