Wall clock time and date at job start Tue Mar 31 2020 02:51:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46898 * 1
3 3 C 1.46898 * 111.00545 * 2 1
4 4 C 1.50690 * 109.47306 * 293.95652 * 3 2 1
5 5 H 1.08003 * 120.00330 * 359.97438 * 4 3 2
6 6 C 1.37877 * 120.00160 * 179.97438 * 4 3 2
7 7 N 1.31519 * 119.99861 * 0.02562 * 6 4 3
8 8 Si 1.86801 * 120.00163 * 179.97438 * 6 4 3
9 9 H 1.48503 * 109.47145 * 60.00518 * 8 6 4
10 10 H 1.48502 * 109.47273 * 180.02562 * 8 6 4
11 11 H 1.48497 * 109.47353 * 300.00217 * 8 6 4
12 12 C 1.46905 * 110.99636 * 123.95806 * 2 1 3
13 13 C 1.53001 * 109.46836 * 163.94004 * 12 2 1
14 14 H 1.08998 * 109.47274 * 55.04580 * 13 12 2
15 15 O 1.42902 * 109.47242 * 295.04437 * 13 12 2
16 16 C 1.52994 * 109.46959 * 175.04390 * 13 12 2
17 17 N 1.46906 * 109.47284 * 185.00316 * 16 13 12
18 18 C 1.46899 * 111.00045 * 180.02562 * 17 16 13
19 19 H 1.09000 * 110.43395 * 327.53709 * 18 17 16
20 20 C 1.54261 * 110.48614 * 204.99945 * 18 17 16
21 21 C 1.53878 * 106.60040 * 217.71123 * 20 18 17
22 22 C 1.54258 * 106.59589 * 359.97438 * 21 20 18
23 23 F 1.39898 * 110.48890 * 142.28969 * 22 21 20
24 24 F 1.39905 * 110.48748 * 264.93135 * 22 21 20
25 25 C 1.54886 * 104.19857 * 23.61041 * 22 21 20
26 26 H 1.09004 * 109.47088 * 65.31576 * 1 2 3
27 27 H 1.08994 * 109.47459 * 185.31492 * 1 2 3
28 28 H 1.09004 * 109.47197 * 305.32079 * 1 2 3
29 29 H 1.09005 * 109.46987 * 53.95554 * 3 2 1
30 30 H 1.09000 * 109.47531 * 173.95123 * 3 2 1
31 31 H 0.97000 * 119.99999 * 180.02562 * 7 6 4
32 32 H 1.08994 * 109.47164 * 283.93907 * 12 2 1
33 33 H 1.08998 * 109.47050 * 43.94728 * 12 2 1
34 34 H 0.96699 * 114.00044 * 299.99771 * 15 13 12
35 35 H 1.09005 * 109.47263 * 305.00191 * 16 13 12
36 36 H 1.09002 * 109.47551 * 65.00169 * 16 13 12
37 37 H 1.00894 * 110.99530 * 303.95127 * 17 16 13
38 38 H 1.09006 * 110.03197 * 336.99482 * 20 18 17
39 39 H 1.09002 * 110.03365 * 98.42552 * 20 18 17
40 40 H 1.09000 * 110.02866 * 119.28308 * 21 20 18
41 41 H 1.09005 * 110.03075 * 240.71185 * 21 20 18
42 42 H 1.09000 * 110.75804 * 203.74190 * 25 22 21
43 43 H 1.08996 * 110.75739 * 80.37127 * 25 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.6371 2.0471 -1.2983
5 1 1.0747 1.5113 -2.0487
6 6 2.0270 3.3494 -1.5283
7 7 2.7123 4.0018 -0.6148
8 14 1.5833 4.1869 -3.1381
9 1 0.1061 4.2233 -3.2864
10 1 2.1155 5.5732 -3.1380
11 1 2.1759 3.4298 -4.2698
12 6 1.9954 -0.7661 1.1376
13 6 3.4723 -1.0856 0.8976
14 1 4.0177 -0.1613 0.7072
15 8 3.5947 -1.9522 -0.2321
16 6 4.0525 -1.7746 2.1342
17 7 5.4965 -1.9735 1.9518
18 6 6.0889 -2.6348 3.1221
19 1 5.5645 -2.3408 4.0313
20 6 7.5899 -2.2964 3.2313
21 6 8.2948 -3.5752 3.7167
22 6 7.1973 -4.6459 3.8863
23 9 7.6709 -5.9002 3.4870
24 9 6.7549 -4.6879 5.2129
25 6 6.0577 -4.1735 2.9496
26 1 -0.3633 0.4292 -0.9338
27 1 -0.3634 -1.0232 0.0952
28 1 -0.3634 0.5942 0.8385
29 1 1.5613 1.9273 0.8310
30 1 3.0798 1.3443 0.1083
31 1 2.9864 4.9181 -0.7764
32 1 1.8944 -0.1779 2.0496
33 1 1.4348 -1.6952 1.2405
34 1 3.1329 -2.7959 -0.1324
35 1 3.8795 -1.1518 3.0119
36 1 3.5673 -2.7408 2.2731
37 1 5.6861 -2.4939 1.1084
38 1 7.9785 -2.0033 2.2559
39 1 7.7399 -1.4914 3.9507
40 1 9.0253 -3.9026 2.9770
41 1 8.7868 -3.3908 4.6718
42 1 5.0990 -4.5793 3.2725
43 1 6.2672 -4.4503 1.9164
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000591754173.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:51:54
Heat of formation + Delta-G solvation = -155.293951 kcal
Electronic energy + Delta-G solvation = -23862.118864 eV
Core-core repulsion = 19998.406506 eV
Total energy + Delta-G solvation = -3863.712358 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 292.170 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-49.16102 -47.29813 -38.84945 -37.63784 -35.59175 -33.76157 -32.46482 -29.96448
-28.99429 -27.43628 -27.03929 -24.95230 -23.29522 -21.62509 -21.51462 -20.83696
-20.00970 -17.87615 -17.20673 -16.82326 -16.38247 -15.96854 -15.61551 -15.31769
-14.96873 -14.67769 -14.45670 -14.36797 -13.92141 -13.63530 -13.60589 -13.58961
-13.27703 -12.74985 -12.64518 -12.29878 -12.16345 -11.92913 -11.87211 -11.59310
-11.39282 -11.14664 -11.07877 -10.95385 -10.93190 -10.72859 -10.63760 -10.34303
-9.74155 -9.63421 -9.13562 -8.56527 -8.38866 -7.20381 -5.99111 -3.99711
3.34251 3.36368 3.40105 3.43575 3.55570 3.73241 3.94926 4.20201
4.45989 4.70343 4.71530 4.75464 4.88376 4.92390 4.92819 5.06968
5.18570 5.29283 5.34754 5.40161 5.44681 5.51386 5.56541 5.69339
5.76690 5.83007 5.83913 6.03058 6.07519 6.34666 6.51503 6.70995
6.85840 7.24850 7.29973 7.33054 7.81895 8.03121 8.11944 8.22124
8.57683 9.07040 9.63995 11.11934
Molecular weight = 292.17amu
Principal moments of inertia in cm(-1)
A = 0.027543 B = 0.002790 C = 0.002666
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1016.364754 B =10033.802754 C =10498.689535
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.041 3.959
2 N -0.532 5.532
3 C 0.192 3.808
4 C -0.505 4.505
5 H 0.062 0.938
6 C 0.055 3.945
7 N -0.900 5.900
8 Si 0.898 3.102
9 H -0.278 1.278
10 H -0.288 1.288
11 H -0.276 1.276
12 C 0.027 3.973
13 C 0.113 3.887
14 H 0.115 0.885
15 O -0.543 6.543
16 C 0.028 3.972
17 N -0.670 5.670
18 C 0.087 3.913
19 H 0.091 0.909
20 C -0.113 4.113
21 C -0.161 4.161
22 C 0.279 3.721
23 F -0.200 7.200
24 F -0.196 7.196
25 C -0.190 4.190
26 H 0.072 0.928
27 H 0.041 0.959
28 H 0.011 0.989
29 H -0.012 1.012
30 H 0.033 0.967
31 H 0.261 0.739
32 H 0.031 0.969
33 H 0.059 0.941
34 H 0.359 0.641
35 H 0.080 0.920
36 H 0.030 0.970
37 H 0.352 0.648
38 H 0.087 0.913
39 H 0.080 0.920
40 H 0.096 0.904
41 H 0.090 0.910
42 H 0.089 0.911
43 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.789 -16.879 10.191 21.200
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.108 4.108
2 N -0.256 5.256
3 C 0.067 3.933
4 C -0.544 4.544
5 H 0.080 0.920
6 C -0.146 4.146
7 N -0.539 5.539
8 Si 0.726 3.274
9 H -0.204 1.204
10 H -0.214 1.214
11 H -0.201 1.201
12 C -0.103 4.103
13 C 0.054 3.946
14 H 0.133 0.867
15 O -0.345 6.345
16 C -0.102 4.102
17 N -0.301 5.301
18 C -0.024 4.024
19 H 0.110 0.890
20 C -0.151 4.151
21 C -0.199 4.199
22 C 0.243 3.757
23 F -0.181 7.181
24 F -0.177 7.177
25 C -0.230 4.230
26 H 0.091 0.909
27 H 0.060 0.940
28 H 0.030 0.970
29 H 0.006 0.994
30 H 0.051 0.949
31 H 0.071 0.929
32 H 0.049 0.951
33 H 0.077 0.923
34 H 0.204 0.796
35 H 0.099 0.901
36 H 0.048 0.952
37 H 0.172 0.828
38 H 0.106 0.894
39 H 0.098 0.902
40 H 0.115 0.885
41 H 0.109 0.891
42 H 0.108 0.892
43 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges 8.542 -15.791 9.780 20.445
hybrid contribution -1.173 -0.607 0.316 1.358
sum 7.369 -16.398 10.096 20.619
Atomic orbital electron populations
1.22186 0.88862 0.98519 1.01199 1.62056 1.06514 1.17945 1.39104
1.19789 0.95588 0.81365 0.96528 1.21107 1.34757 0.96817 1.01700
0.91995 1.24982 0.95331 0.97368 0.96953 1.69947 1.38413 1.11466
1.34109 0.86562 0.78601 0.78307 0.83942 1.20370 1.21388 1.20123
1.22664 0.95704 0.98165 0.93765 1.22039 0.94816 0.94013 0.83771
0.86701 1.86709 1.76057 1.30533 1.41237 1.22767 0.87684 0.99320
1.00424 1.60419 1.12425 1.53055 1.04177 1.22406 0.96026 0.88600
0.95398 0.89044 1.22141 0.93717 0.95943 1.03321 1.23165 0.97357
0.94762 1.04659 1.21873 0.94729 0.80893 0.78239 1.93004 1.89634
1.45038 1.90407 1.93012 1.90622 1.96676 1.37369 1.24255 0.98312
0.99730 1.00745 0.90939 0.93994 0.96999 0.99386 0.94910 0.92916
0.95056 0.92277 0.79630 0.90127 0.95174 0.82809 0.89406 0.90166
0.88497 0.89101 0.89239 0.87961
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.79 9.32 60.06 0.56 1.35 16
2 N -0.53 -11.39 4.66 -244.37 -1.14 -12.53 16
3 C 0.19 5.02 4.57 -4.98 -0.02 5.00 16
4 C -0.51 -14.39 8.58 -34.44 -0.30 -14.68 16
5 H 0.06 1.75 7.10 -52.48 -0.37 1.38 16
6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16
7 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16
8 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16
9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
12 C 0.03 0.45 4.61 -3.82 -0.02 0.43 16
13 C 0.11 1.76 3.26 -26.73 -0.09 1.68 16
14 H 0.12 2.24 6.45 -51.93 -0.34 1.90 16
15 O -0.54 -8.45 12.81 -35.23 -0.45 -8.91 16
16 C 0.03 0.33 5.22 -3.82 -0.02 0.31 16
17 N -0.67 -7.33 6.29 -104.99 -0.66 -7.99 16
18 C 0.09 0.77 3.18 -66.07 -0.21 0.56 16
19 H 0.09 0.84 7.82 -51.93 -0.41 0.44 16
20 C -0.11 -0.90 6.54 -25.61 -0.17 -1.07 16
21 C -0.16 -1.17 6.41 -25.62 -0.16 -1.34 16
22 C 0.28 2.53 2.49 -25.08 -0.06 2.47 16
23 F -0.20 -2.10 17.16 2.25 0.04 -2.06 16
24 F -0.20 -2.08 17.17 2.25 0.04 -2.04 16
25 C -0.19 -1.55 6.04 -24.75 -0.15 -1.70 16
26 H 0.07 1.50 7.02 -51.93 -0.36 1.13 16
27 H 0.04 0.67 7.88 -51.93 -0.41 0.26 16
28 H 0.01 0.22 8.07 -51.93 -0.42 -0.19 16
29 H -0.01 -0.32 8.07 -51.93 -0.42 -0.74 16
30 H 0.03 0.91 6.34 -51.93 -0.33 0.58 16
31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16
32 H 0.03 0.53 8.05 -51.93 -0.42 0.12 16
33 H 0.06 0.84 7.82 -51.93 -0.41 0.43 16
34 H 0.36 4.10 9.05 45.56 0.41 4.51 16
35 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16
36 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16
37 H 0.35 3.76 7.79 -39.29 -0.31 3.46 16
38 H 0.09 0.73 8.04 -51.93 -0.42 0.31 16
39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
40 H 0.10 0.62 8.11 -51.93 -0.42 0.20 16
41 H 0.09 0.60 8.12 -51.93 -0.42 0.18 16
42 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16
43 H 0.10 0.77 7.79 -51.93 -0.40 0.36 16
LS Contribution 352.25 15.07 5.31 5.31
Total: -1.00 -31.62 352.25 -8.14 -39.77
By element:
Atomic # 1 Polarization: 9.51 SS G_CDS: -6.26 Total: 3.25 kcal
Atomic # 6 Polarization: -4.78 SS G_CDS: -0.73 Total: -5.52 kcal
Atomic # 7 Polarization: -45.63 SS G_CDS: -1.06 Total: -46.69 kcal
Atomic # 8 Polarization: -8.45 SS G_CDS: -0.45 Total: -8.91 kcal
Atomic # 9 Polarization: -4.18 SS G_CDS: 0.08 Total: -4.10 kcal
Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal
Total LS contribution 5.31 Total: 5.31 kcal
Total: -31.62 -8.14 -39.77 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000591754173.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -115.527 kcal
(2) G-P(sol) polarization free energy of solvation -31.624 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.151 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.767 kcal
(6) G-S(sol) free energy of system = (1) + (5) -155.294 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds