Wall clock time and date at job start Tue Mar 31 2020 02:51:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46898 * 1
3 3 C 1.46898 * 111.00545 * 2 1
4 4 C 1.50690 * 109.47306 * 293.95652 * 3 2 1
5 5 H 1.08003 * 120.00330 * 359.97438 * 4 3 2
6 6 C 1.37877 * 120.00160 * 179.97438 * 4 3 2
7 7 N 1.31519 * 119.99861 * 0.02562 * 6 4 3
8 8 Si 1.86801 * 120.00163 * 179.97438 * 6 4 3
9 9 H 1.48503 * 109.47145 * 60.00518 * 8 6 4
10 10 H 1.48502 * 109.47273 * 180.02562 * 8 6 4
11 11 H 1.48497 * 109.47353 * 300.00217 * 8 6 4
12 12 C 1.46905 * 110.99636 * 123.95806 * 2 1 3
13 13 C 1.53001 * 109.46836 * 163.94004 * 12 2 1
14 14 H 1.08998 * 109.47274 * 55.04580 * 13 12 2
15 15 O 1.42902 * 109.47242 * 295.04437 * 13 12 2
16 16 C 1.52994 * 109.46959 * 175.04390 * 13 12 2
17 17 N 1.46906 * 109.47284 * 185.00316 * 16 13 12
18 18 C 1.46899 * 111.00045 * 180.02562 * 17 16 13
19 19 H 1.09000 * 110.43395 * 327.53709 * 18 17 16
20 20 C 1.54261 * 110.48614 * 204.99945 * 18 17 16
21 21 C 1.53878 * 106.60040 * 217.71123 * 20 18 17
22 22 C 1.54258 * 106.59589 * 359.97438 * 21 20 18
23 23 F 1.39898 * 110.48890 * 142.28969 * 22 21 20
24 24 F 1.39905 * 110.48748 * 264.93135 * 22 21 20
25 25 C 1.54886 * 104.19857 * 23.61041 * 22 21 20
26 26 H 1.09004 * 109.47088 * 65.31576 * 1 2 3
27 27 H 1.08994 * 109.47459 * 185.31492 * 1 2 3
28 28 H 1.09004 * 109.47197 * 305.32079 * 1 2 3
29 29 H 1.09005 * 109.46987 * 53.95554 * 3 2 1
30 30 H 1.09000 * 109.47531 * 173.95123 * 3 2 1
31 31 H 0.97000 * 119.99999 * 180.02562 * 7 6 4
32 32 H 1.08994 * 109.47164 * 283.93907 * 12 2 1
33 33 H 1.08998 * 109.47050 * 43.94728 * 12 2 1
34 34 H 0.96699 * 114.00044 * 299.99771 * 15 13 12
35 35 H 1.09005 * 109.47263 * 305.00191 * 16 13 12
36 36 H 1.09002 * 109.47551 * 65.00169 * 16 13 12
37 37 H 1.00894 * 110.99530 * 303.95127 * 17 16 13
38 38 H 1.09006 * 110.03197 * 336.99482 * 20 18 17
39 39 H 1.09002 * 110.03365 * 98.42552 * 20 18 17
40 40 H 1.09000 * 110.02866 * 119.28308 * 21 20 18
41 41 H 1.09005 * 110.03075 * 240.71185 * 21 20 18
42 42 H 1.09000 * 110.75804 * 203.74190 * 25 22 21
43 43 H 1.08996 * 110.75739 * 80.37127 * 25 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.6371 2.0471 -1.2983
5 1 1.0747 1.5113 -2.0487
6 6 2.0270 3.3494 -1.5283
7 7 2.7123 4.0018 -0.6148
8 14 1.5833 4.1869 -3.1381
9 1 0.1061 4.2233 -3.2864
10 1 2.1155 5.5732 -3.1380
11 1 2.1759 3.4298 -4.2698
12 6 1.9954 -0.7661 1.1376
13 6 3.4723 -1.0856 0.8976
14 1 4.0177 -0.1613 0.7072
15 8 3.5947 -1.9522 -0.2321
16 6 4.0525 -1.7746 2.1342
17 7 5.4965 -1.9735 1.9518
18 6 6.0889 -2.6348 3.1221
19 1 5.5645 -2.3408 4.0313
20 6 7.5899 -2.2964 3.2313
21 6 8.2948 -3.5752 3.7167
22 6 7.1973 -4.6459 3.8863
23 9 7.6709 -5.9002 3.4870
24 9 6.7549 -4.6879 5.2129
25 6 6.0577 -4.1735 2.9496
26 1 -0.3633 0.4292 -0.9338
27 1 -0.3634 -1.0232 0.0952
28 1 -0.3634 0.5942 0.8385
29 1 1.5613 1.9273 0.8310
30 1 3.0798 1.3443 0.1083
31 1 2.9864 4.9181 -0.7764
32 1 1.8944 -0.1779 2.0496
33 1 1.4348 -1.6952 1.2405
34 1 3.1329 -2.7959 -0.1324
35 1 3.8795 -1.1518 3.0119
36 1 3.5673 -2.7408 2.2731
37 1 5.6861 -2.4939 1.1084
38 1 7.9785 -2.0033 2.2559
39 1 7.7399 -1.4914 3.9507
40 1 9.0253 -3.9026 2.9770
41 1 8.7868 -3.3908 4.6718
42 1 5.0990 -4.5793 3.2725
43 1 6.2672 -4.4503 1.9164
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000591754173.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:51:54
Heat of formation + Delta-G solvation = -179.815224 kcal
Electronic energy + Delta-G solvation = -23863.182186 eV
Core-core repulsion = 19998.406506 eV
Total energy + Delta-G solvation = -3864.775680 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 292.170 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-49.91351 -48.06429 -39.85030 -38.75999 -37.08654 -34.65758 -34.59364 -31.14385
-29.72277 -29.32618 -28.09978 -26.30495 -24.96194 -22.86528 -22.21580 -21.84322
-21.36654 -18.64190 -18.58780 -17.95038 -17.61573 -17.20827 -16.68510 -16.50990
-16.18329 -16.04931 -15.74473 -15.29690 -15.16760 -14.94390 -14.72288 -14.40638
-14.26952 -14.04640 -13.88978 -13.55517 -13.17071 -13.14384 -12.98459 -12.85267
-12.59443 -12.54590 -12.48623 -12.31897 -12.30238 -12.14539 -11.76731 -11.59487
-11.48708 -11.32127 -10.74287 -10.58274 -9.38366 -8.94488 -8.18776 -6.28300
1.40897 1.44726 1.52344 2.41506 2.63620 2.87856 2.96184 3.13471
3.19554 3.37982 3.57801 3.70544 4.00945 4.07556 4.09416 4.17216
4.24835 4.28697 4.34281 4.40956 4.46604 4.58824 4.62689 4.64842
4.78744 4.81755 4.88072 4.89895 5.08468 5.11624 5.16868 5.20048
5.29597 5.32961 5.66093 6.02907 6.08860 6.35572 6.42508 6.66585
6.87321 7.06176 7.40982 8.92158
Molecular weight = 292.17amu
Principal moments of inertia in cm(-1)
A = 0.027543 B = 0.002790 C = 0.002666
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1016.364754 B =10033.802754 C =10498.689535
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.042 3.958
2 N -0.543 5.543
3 C 0.210 3.790
4 C -0.525 4.525
5 H 0.060 0.940
6 C 0.000 4.000
7 N -0.934 5.934
8 Si 0.968 3.032
9 H -0.267 1.267
10 H -0.282 1.282
11 H -0.270 1.270
12 C 0.026 3.974
13 C 0.123 3.877
14 H 0.066 0.934
15 O -0.559 6.559
16 C 0.042 3.958
17 N -0.683 5.683
18 C 0.088 3.912
19 H 0.090 0.910
20 C -0.111 4.111
21 C -0.154 4.154
22 C 0.272 3.728
23 F -0.209 7.209
24 F -0.206 7.206
25 C -0.182 4.182
26 H 0.053 0.947
27 H 0.083 0.917
28 H 0.007 0.993
29 H -0.042 1.042
30 H 0.006 0.994
31 H 0.264 0.736
32 H 0.027 0.973
33 H 0.097 0.903
34 H 0.379 0.621
35 H 0.078 0.922
36 H 0.058 0.942
37 H 0.353 0.647
38 H 0.084 0.916
39 H 0.081 0.919
40 H 0.108 0.892
41 H 0.099 0.901
42 H 0.093 0.907
43 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.413 -18.317 9.869 22.088
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 N -0.267 5.267
3 C 0.083 3.917
4 C -0.563 4.563
5 H 0.078 0.922
6 C -0.197 4.197
7 N -0.575 5.575
8 Si 0.792 3.208
9 H -0.192 1.192
10 H -0.208 1.208
11 H -0.195 1.195
12 C -0.103 4.103
13 C 0.063 3.937
14 H 0.084 0.916
15 O -0.365 6.365
16 C -0.088 4.088
17 N -0.314 5.314
18 C -0.022 4.022
19 H 0.108 0.892
20 C -0.149 4.149
21 C -0.192 4.192
22 C 0.235 3.765
23 F -0.190 7.190
24 F -0.187 7.187
25 C -0.222 4.222
26 H 0.072 0.928
27 H 0.102 0.898
28 H 0.025 0.975
29 H -0.025 1.025
30 H 0.025 0.975
31 H 0.073 0.927
32 H 0.045 0.955
33 H 0.116 0.884
34 H 0.227 0.773
35 H 0.096 0.904
36 H 0.076 0.924
37 H 0.174 0.826
38 H 0.103 0.897
39 H 0.100 0.900
40 H 0.126 0.874
41 H 0.117 0.883
42 H 0.112 0.888
43 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges 8.153 -17.266 9.469 21.313
hybrid contribution -1.053 -0.229 0.444 1.165
sum 7.101 -17.495 9.913 21.325
Atomic orbital electron populations
1.22209 0.87530 1.00859 1.00017 1.61953 1.07844 1.15189 1.41728
1.19389 0.93885 0.83816 0.94584 1.21454 1.34828 0.97474 1.02526
0.92175 1.25913 0.95053 0.98101 1.00670 1.70078 1.39350 1.11858
1.36201 0.85460 0.78839 0.77183 0.79280 1.19152 1.20750 1.19483
1.22815 0.96877 0.98804 0.91835 1.21725 0.93595 0.92897 0.85442
0.91616 1.86657 1.76621 1.31714 1.41523 1.22540 0.88303 1.00055
0.97929 1.60380 1.12058 1.53953 1.05022 1.22393 0.96359 0.89078
0.94396 0.89219 1.22117 0.93174 0.96389 1.03237 1.23141 0.96967
0.93646 1.05447 1.22134 0.95657 0.80832 0.77830 1.92985 1.89781
1.45756 1.90455 1.92991 1.90806 1.96713 1.38230 1.24196 0.98237
0.98794 1.01001 0.92799 0.89833 0.97490 1.02465 0.97550 0.92723
0.95475 0.88439 0.77257 0.90395 0.92372 0.82643 0.89725 0.90046
0.87393 0.88287 0.88818 0.87137
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.58 9.32 127.69 1.19 2.77 16
2 N -0.54 -23.22 4.66 -927.06 -4.32 -27.53 16
3 C 0.21 11.35 4.57 85.55 0.39 11.74 16
4 C -0.52 -30.50 8.58 25.60 0.22 -30.28 16
5 H 0.06 3.44 7.10 -2.91 -0.02 3.42 16
6 C 0.00 0.03 5.46 84.65 0.46 0.49 16
7 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16
8 Si 0.97 45.14 29.54 68.60 2.03 47.17 16
9 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16
10 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16
11 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16
12 C 0.03 0.84 4.61 86.30 0.40 1.23 16
13 C 0.12 3.81 3.26 30.59 0.10 3.91 16
14 H 0.07 2.70 6.45 -2.39 -0.02 2.69 16
15 O -0.56 -16.77 12.81 -148.98 -1.91 -18.68 16
16 C 0.04 0.91 5.22 86.30 0.45 1.36 16
17 N -0.68 -14.23 6.29 -486.08 -3.06 -17.29 16
18 C 0.09 1.45 3.18 45.98 0.15 1.60 16
19 H 0.09 1.52 7.82 -2.39 -0.02 1.50 16
20 C -0.11 -1.63 6.54 31.32 0.20 -1.43 16
21 C -0.15 -1.98 6.41 31.32 0.20 -1.78 16
22 C 0.27 4.50 2.49 31.67 0.08 4.58 16
23 F -0.21 -4.08 17.16 44.97 0.77 -3.31 16
24 F -0.21 -4.12 17.17 44.97 0.77 -3.34 16
25 C -0.18 -2.62 6.04 31.88 0.19 -2.42 16
26 H 0.05 2.20 7.02 -2.38 -0.02 2.18 16
27 H 0.08 2.43 7.88 -2.39 -0.02 2.41 16
28 H 0.01 0.25 8.07 -2.38 -0.02 0.23 16
29 H -0.04 -2.49 8.07 -2.38 -0.02 -2.51 16
30 H 0.01 0.38 6.34 -2.39 -0.02 0.37 16
31 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16
32 H 0.03 0.92 8.05 -2.39 -0.02 0.90 16
33 H 0.10 2.43 7.82 -2.39 -0.02 2.41 16
34 H 0.38 7.66 9.05 -74.06 -0.67 6.99 16
35 H 0.08 1.76 8.08 -2.38 -0.02 1.74 16
36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16
37 H 0.35 7.13 7.79 -89.70 -0.70 6.43 16
38 H 0.08 1.32 8.04 -2.38 -0.02 1.30 16
39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16
40 H 0.11 1.17 8.11 -2.39 -0.02 1.15 16
41 H 0.10 1.13 8.12 -2.38 -0.02 1.11 16
42 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16
43 H 0.11 1.42 7.79 -2.39 -0.02 1.40 16
Total: -1.00 -69.68 352.25 -1.75 -71.43
By element:
Atomic # 1 Polarization: 17.11 SS G_CDS: -0.35 Total: 16.75 kcal
Atomic # 6 Polarization: -12.27 SS G_CDS: 4.03 Total: -8.24 kcal
Atomic # 7 Polarization: -94.69 SS G_CDS: -7.09 Total: -101.78 kcal
Atomic # 8 Polarization: -16.77 SS G_CDS: -1.91 Total: -18.68 kcal
Atomic # 9 Polarization: -8.20 SS G_CDS: 1.54 Total: -6.65 kcal
Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal
Total: -69.68 -1.75 -71.43 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000591754173.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -108.385 kcal
(2) G-P(sol) polarization free energy of solvation -69.684 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.069 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.747 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.430 kcal
(6) G-S(sol) free energy of system = (1) + (5) -179.815 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds