Wall clock time and date at job start Tue Mar 31 2020 02:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99544 * 2 1 4 4 H 1.48501 * 109.47035 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47516 * 299.99736 * 3 2 1 6 6 H 1.48501 * 109.47442 * 60.00062 * 3 2 1 7 7 C 1.37869 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99873 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00297 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47548 * 179.97438 * 9 7 2 11 11 C 1.46957 * 110.99969 * 170.00007 * 10 9 7 12 12 C 1.53054 * 109.35811 * 183.19161 * 11 10 9 13 13 N 1.46955 * 109.36808 * 301.60033 * 12 11 10 14 14 C 1.46901 * 110.99835 * 183.19253 * 13 12 11 15 15 C 1.50701 * 109.46921 * 169.99883 * 14 13 12 16 16 N 1.31060 * 126.66157 * 269.68538 * 15 14 13 17 17 N 1.28844 * 107.99450 * 179.89663 * 16 15 14 18 18 N 1.28737 * 109.39241 * 0.37470 * 17 16 15 19 19 N 1.29022 * 108.81012 * 359.76997 * 18 17 16 20 20 C 1.46502 * 126.43841 * 179.97438 * 19 18 17 21 21 C 1.52997 * 117.50042 * 8.76502 * 20 19 18 22 22 C 1.53008 * 117.49553 * 300.10842 * 20 19 18 23 23 C 1.46958 * 110.87954 * 59.32271 * 13 12 11 24 24 C 1.46955 * 111.00275 * 293.80481 * 10 9 7 25 25 H 0.96997 * 120.00281 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46687 * 60.00126 * 9 7 2 27 27 H 1.08993 * 109.47360 * 300.00300 * 9 7 2 28 28 H 1.08997 * 109.48667 * 63.22986 * 11 10 9 29 29 H 1.08993 * 109.48792 * 303.15938 * 11 10 9 30 30 H 1.09002 * 109.48344 * 181.63089 * 12 11 10 31 31 H 1.08998 * 109.49062 * 61.57491 * 12 11 10 32 32 H 1.09002 * 109.47401 * 49.99911 * 14 13 12 33 33 H 1.09001 * 109.46874 * 289.99924 * 14 13 12 34 34 H 1.09000 * 115.55309 * 154.43947 * 20 19 18 35 35 H 1.09002 * 117.49872 * 0.02562 * 21 20 19 36 36 H 1.08995 * 117.50252 * 145.02257 * 21 20 19 37 37 H 1.09001 * 117.49366 * 214.97950 * 22 20 19 38 38 H 1.08996 * 117.49740 * 359.97133 * 22 20 19 39 39 H 1.08997 * 109.48699 * 60.64519 * 23 13 12 40 40 H 1.08993 * 109.48441 * 180.71371 * 23 13 12 41 41 H 1.08997 * 109.48797 * 296.78085 * 24 10 9 42 42 H 1.09004 * 109.48478 * 56.84258 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0005 11 6 1.5211 -4.8940 0.2388 12 6 2.5567 -6.0186 0.3105 13 7 3.3199 -6.0591 -0.9447 14 6 4.2745 -7.1757 -0.9446 15 6 4.8587 -7.3372 -2.3244 16 7 4.3892 -8.0891 -3.2898 17 7 5.1642 -7.9563 -4.3104 18 7 6.1204 -7.1452 -4.0184 19 7 5.9671 -6.7420 -2.8025 20 6 6.8365 -5.8115 -2.0782 21 6 7.9273 -5.0960 -2.8776 22 6 8.3026 -6.2100 -1.8972 23 6 4.0046 -4.7808 -1.1829 24 6 2.9690 -3.6562 -1.2547 25 1 -0.4850 0.8400 -0.0004 26 1 0.6249 -2.5570 -0.8898 27 1 0.6242 -2.5567 0.8902 28 1 0.8257 -5.0915 -0.5769 29 1 0.9735 -4.8433 1.1798 30 1 2.0488 -6.9717 0.4582 31 1 3.2357 -5.8352 1.1432 32 1 3.7606 -8.0931 -0.6579 33 1 5.0743 -6.9697 -0.2332 34 1 6.3616 -5.2583 -1.2679 35 1 7.9978 -5.3173 -3.9426 36 1 8.1703 -4.0723 -2.5932 37 1 8.7923 -5.9186 -0.9680 38 1 8.6201 -7.1646 -2.3166 39 1 4.7000 -4.5832 -0.3672 40 1 4.5522 -4.8315 -2.1239 41 1 2.2899 -3.8395 -2.0873 42 1 3.4769 -2.7031 -1.4023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611175504.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:52 Heat of formation + Delta-G solvation = 167.901333 kcal Electronic energy + Delta-G solvation = -23868.950596 eV Core-core repulsion = 20502.234974 eV Total energy + Delta-G solvation = -3366.715621 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.171 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.28264 -39.08715 -38.17889 -35.62540 -33.80606 -33.02636 -32.16285 -30.65504 -28.92881 -26.61594 -25.39583 -24.37194 -23.41590 -23.15125 -22.43051 -21.64504 -21.05014 -19.41134 -18.07766 -17.27727 -16.40839 -15.95370 -15.66397 -15.51307 -14.99433 -14.63715 -14.41181 -14.06618 -13.81605 -13.58019 -13.41415 -13.02664 -12.51957 -12.36410 -12.19463 -12.12642 -12.03459 -11.83581 -11.38919 -11.27579 -11.11256 -10.99552 -10.89866 -10.74307 -10.60052 -10.51983 -10.43613 -10.08315 -9.82919 -9.24811 -8.52531 -8.45072 -7.35313 -6.08629 -4.10689 1.03864 1.67466 2.15715 3.03359 3.25939 3.33572 3.36685 3.62608 3.77714 3.96318 4.07083 4.21962 4.30926 4.36078 4.79326 4.84805 5.03551 5.07278 5.07728 5.16601 5.26735 5.28917 5.31497 5.41370 5.50972 5.51404 5.60206 5.63274 5.67531 5.84483 6.00926 6.05234 6.31854 6.42360 6.52786 6.84717 6.90883 7.22561 7.28674 7.71735 7.99479 8.10368 8.45795 8.53769 8.96439 9.53894 11.02276 Molecular weight = 292.17amu Principal moments of inertia in cm(-1) A = 0.018315 B = 0.004005 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.474949 B = 6990.266181 C = 7870.061686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.537 5.537 11 C 0.054 3.946 12 C 0.064 3.936 13 N -0.532 5.532 14 C 0.135 3.865 15 C 0.204 3.796 16 N -0.290 5.290 17 N -0.078 5.078 18 N -0.099 5.099 19 N -0.278 5.278 20 C 0.039 3.961 21 C -0.151 4.151 22 C -0.163 4.163 23 C 0.050 3.950 24 C 0.069 3.931 25 H 0.261 0.739 26 H -0.008 1.008 27 H 0.032 0.968 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.116 0.884 33 H 0.062 0.938 34 H 0.163 0.837 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.044 0.956 40 H 0.062 0.938 41 H 0.031 0.969 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.788 -13.007 0.273 19.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.263 5.263 11 C -0.075 4.075 12 C -0.063 4.063 13 N -0.258 5.258 14 C 0.004 3.996 15 C -0.074 4.074 16 N -0.139 5.139 17 N -0.072 5.072 18 N -0.085 5.085 19 N -0.079 5.079 20 C -0.064 4.064 21 C -0.189 4.189 22 C -0.202 4.202 23 C -0.077 4.077 24 C -0.060 4.060 25 H 0.071 0.929 26 H 0.010 0.990 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.134 0.866 33 H 0.080 0.920 34 H 0.180 0.820 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.125 0.875 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.049 0.951 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.609 -13.449 -1.050 19.884 hybrid contribution 0.369 1.447 0.749 1.671 sum 14.978 -12.001 -0.301 19.195 Atomic orbital electron populations 1.69964 1.06070 1.26752 1.50822 1.24989 0.94852 0.99321 0.95386 0.86460 0.79967 0.83499 0.77582 1.19734 1.21076 1.20969 1.21152 0.93390 0.89927 1.50275 0.91944 1.19718 0.90022 0.87177 0.96286 1.62321 1.28289 1.02889 1.32761 1.22090 0.94705 0.89698 1.00966 1.22212 0.96047 0.99469 0.88567 1.62099 1.24808 1.02400 1.36540 1.20505 0.95306 0.98214 0.85559 1.25887 0.87302 0.94199 1.00006 1.75031 1.21990 1.20000 0.96892 1.78629 0.98533 1.11260 1.18757 1.78787 1.21212 1.12071 0.96392 1.47879 1.19499 1.31161 1.09327 1.22590 0.86807 0.96585 1.00411 1.23462 0.97067 0.98683 0.99675 1.23550 0.92924 1.00992 1.02710 1.22501 0.96812 0.89088 0.99339 1.21948 0.95380 0.96931 0.91730 0.92899 0.98967 0.95039 0.94789 0.90486 0.90337 0.93649 0.86581 0.92009 0.82037 0.86463 0.86057 0.86177 0.87534 0.93799 0.91970 0.95114 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -13.79 8.47 -34.45 -0.29 -14.08 16 8 H 0.06 1.66 7.13 -52.48 -0.37 1.28 16 9 C 0.19 4.87 4.72 -4.98 -0.02 4.85 16 10 N -0.54 -10.93 4.70 -235.92 -1.11 -12.04 16 11 C 0.05 0.92 5.61 -3.76 -0.02 0.90 16 12 C 0.06 0.83 5.61 -3.77 -0.02 0.81 16 13 N -0.53 -7.11 4.70 -235.91 -1.11 -8.22 16 14 C 0.14 1.42 5.24 -4.97 -0.03 1.40 16 15 C 0.20 2.65 6.77 -155.44 -1.05 1.59 16 16 N -0.29 -4.58 12.36 32.70 0.40 -4.17 16 17 N -0.08 -1.28 13.43 60.35 0.81 -0.47 16 18 N -0.10 -1.42 12.69 60.35 0.77 -0.65 16 19 N -0.28 -3.31 3.30 -51.81 -0.17 -3.48 16 20 C 0.04 0.33 5.36 -67.93 -0.36 -0.04 16 21 C -0.15 -1.02 10.16 -26.70 -0.27 -1.29 16 22 C -0.16 -0.95 10.46 -26.69 -0.28 -1.23 16 23 C 0.05 0.71 4.14 -3.77 -0.02 0.70 16 24 C 0.07 1.29 5.43 -3.77 -0.02 1.26 16 25 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 26 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 27 H 0.03 0.85 8.03 -51.93 -0.42 0.43 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 30 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.12 1.06 8.03 -51.93 -0.42 0.65 16 33 H 0.06 0.50 7.82 -51.93 -0.41 0.10 16 34 H 0.16 1.21 5.50 -51.93 -0.29 0.92 16 35 H 0.12 0.92 7.85 -51.93 -0.41 0.51 16 36 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.04 0.57 7.36 -51.93 -0.38 0.19 16 40 H 0.06 0.85 5.57 -51.93 -0.29 0.57 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.09 1.76 6.79 -51.93 -0.35 1.41 16 LS Contribution 338.24 15.07 5.10 5.10 Total: -1.00 -32.42 338.24 -8.34 -40.76 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -6.26 Total: -3.71 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -2.48 Total: -3.67 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.33 Total: -54.49 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.42 -8.34 -40.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175504.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.664 kcal (2) G-P(sol) polarization free energy of solvation -32.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds