Wall clock time and date at job start Tue Mar 31 2020 02:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99544 * 2 1 4 4 H 1.48501 * 109.47035 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47516 * 299.99736 * 3 2 1 6 6 H 1.48501 * 109.47442 * 60.00062 * 3 2 1 7 7 C 1.37869 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99873 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00297 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47548 * 179.97438 * 9 7 2 11 11 C 1.46957 * 110.99969 * 170.00007 * 10 9 7 12 12 C 1.53054 * 109.35811 * 183.19161 * 11 10 9 13 13 N 1.46955 * 109.36808 * 301.60033 * 12 11 10 14 14 C 1.46901 * 110.99835 * 183.19253 * 13 12 11 15 15 C 1.50701 * 109.46921 * 169.99883 * 14 13 12 16 16 N 1.31060 * 126.66157 * 269.68538 * 15 14 13 17 17 N 1.28844 * 107.99450 * 179.89663 * 16 15 14 18 18 N 1.28737 * 109.39241 * 0.37470 * 17 16 15 19 19 N 1.29022 * 108.81012 * 359.76997 * 18 17 16 20 20 C 1.46502 * 126.43841 * 179.97438 * 19 18 17 21 21 C 1.52997 * 117.50042 * 8.76502 * 20 19 18 22 22 C 1.53008 * 117.49553 * 300.10842 * 20 19 18 23 23 C 1.46958 * 110.87954 * 59.32271 * 13 12 11 24 24 C 1.46955 * 111.00275 * 293.80481 * 10 9 7 25 25 H 0.96997 * 120.00281 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46687 * 60.00126 * 9 7 2 27 27 H 1.08993 * 109.47360 * 300.00300 * 9 7 2 28 28 H 1.08997 * 109.48667 * 63.22986 * 11 10 9 29 29 H 1.08993 * 109.48792 * 303.15938 * 11 10 9 30 30 H 1.09002 * 109.48344 * 181.63089 * 12 11 10 31 31 H 1.08998 * 109.49062 * 61.57491 * 12 11 10 32 32 H 1.09002 * 109.47401 * 49.99911 * 14 13 12 33 33 H 1.09001 * 109.46874 * 289.99924 * 14 13 12 34 34 H 1.09000 * 115.55309 * 154.43947 * 20 19 18 35 35 H 1.09002 * 117.49872 * 0.02562 * 21 20 19 36 36 H 1.08995 * 117.50252 * 145.02257 * 21 20 19 37 37 H 1.09001 * 117.49366 * 214.97950 * 22 20 19 38 38 H 1.08996 * 117.49740 * 359.97133 * 22 20 19 39 39 H 1.08997 * 109.48699 * 60.64519 * 23 13 12 40 40 H 1.08993 * 109.48441 * 180.71371 * 23 13 12 41 41 H 1.08997 * 109.48797 * 296.78085 * 24 10 9 42 42 H 1.09004 * 109.48478 * 56.84258 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0005 11 6 1.5211 -4.8940 0.2388 12 6 2.5567 -6.0186 0.3105 13 7 3.3199 -6.0591 -0.9447 14 6 4.2745 -7.1757 -0.9446 15 6 4.8587 -7.3372 -2.3244 16 7 4.3892 -8.0891 -3.2898 17 7 5.1642 -7.9563 -4.3104 18 7 6.1204 -7.1452 -4.0184 19 7 5.9671 -6.7420 -2.8025 20 6 6.8365 -5.8115 -2.0782 21 6 7.9273 -5.0960 -2.8776 22 6 8.3026 -6.2100 -1.8972 23 6 4.0046 -4.7808 -1.1829 24 6 2.9690 -3.6562 -1.2547 25 1 -0.4850 0.8400 -0.0004 26 1 0.6249 -2.5570 -0.8898 27 1 0.6242 -2.5567 0.8902 28 1 0.8257 -5.0915 -0.5769 29 1 0.9735 -4.8433 1.1798 30 1 2.0488 -6.9717 0.4582 31 1 3.2357 -5.8352 1.1432 32 1 3.7606 -8.0931 -0.6579 33 1 5.0743 -6.9697 -0.2332 34 1 6.3616 -5.2583 -1.2679 35 1 7.9978 -5.3173 -3.9426 36 1 8.1703 -4.0723 -2.5932 37 1 8.7923 -5.9186 -0.9680 38 1 8.6201 -7.1646 -2.3166 39 1 4.7000 -4.5832 -0.3672 40 1 4.5522 -4.8315 -2.1239 41 1 2.2899 -3.8395 -2.0873 42 1 3.4769 -2.7031 -1.4023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611175504.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:51 Heat of formation + Delta-G solvation = 143.281028 kcal Electronic energy + Delta-G solvation = -23870.018212 eV Core-core repulsion = 20502.234974 eV Total energy + Delta-G solvation = -3367.783238 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.171 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.29007 -40.31659 -38.86321 -37.03365 -34.79011 -34.68934 -33.55718 -31.92863 -30.38125 -28.16885 -26.37079 -25.78671 -24.69771 -23.79881 -23.41616 -23.14552 -22.03019 -20.71913 -18.87930 -18.50633 -18.23750 -17.22830 -16.63622 -16.39461 -16.23559 -15.98156 -15.83907 -15.41536 -15.01391 -14.78225 -14.59076 -14.21147 -13.93804 -13.45939 -13.34325 -13.32054 -13.06174 -12.90361 -12.73056 -12.60630 -12.47809 -12.30051 -12.28979 -12.15307 -11.99404 -11.72722 -11.60999 -11.45266 -11.18975 -10.92722 -10.63117 -9.47194 -9.08498 -8.21057 -6.31614 0.08441 0.87483 1.07622 1.41787 1.41981 1.55132 2.39833 2.48025 2.70920 2.95176 3.11516 3.16118 3.25493 3.39204 3.65099 3.69765 3.85765 4.10170 4.12197 4.20902 4.30790 4.32931 4.42541 4.50949 4.55674 4.62066 4.62847 4.72453 4.80040 4.90632 4.93561 4.97704 5.01334 5.05510 5.19516 5.23022 5.26195 5.62698 5.84470 5.87184 6.03813 6.27779 6.58634 6.84522 7.38588 7.48890 8.90614 Molecular weight = 292.17amu Principal moments of inertia in cm(-1) A = 0.018315 B = 0.004005 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.474949 B = 6990.266181 C = 7870.061686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.257 1.257 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.520 4.520 8 H 0.068 0.932 9 C 0.206 3.794 10 N -0.534 5.534 11 C 0.049 3.951 12 C 0.077 3.923 13 N -0.553 5.553 14 C 0.140 3.860 15 C 0.203 3.797 16 N -0.320 5.320 17 N -0.112 5.112 18 N -0.106 5.106 19 N -0.267 5.267 20 C 0.011 3.989 21 C -0.153 4.153 22 C -0.139 4.139 23 C 0.067 3.933 24 C 0.070 3.930 25 H 0.264 0.736 26 H -0.047 1.047 27 H 0.008 0.992 28 H 0.013 0.987 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.135 0.865 33 H 0.099 0.901 34 H 0.176 0.824 35 H 0.101 0.899 36 H 0.142 0.858 37 H 0.151 0.849 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.001 0.999 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.617 -13.213 1.996 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.181 1.181 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.558 4.558 8 H 0.086 0.914 9 C 0.080 3.920 10 N -0.259 5.259 11 C -0.080 4.080 12 C -0.050 4.050 13 N -0.280 5.280 14 C 0.010 3.990 15 C -0.075 4.075 16 N -0.170 5.170 17 N -0.106 5.106 18 N -0.092 5.092 19 N -0.069 5.069 20 C -0.090 4.090 21 C -0.191 4.191 22 C -0.177 4.177 23 C -0.061 4.061 24 C -0.059 4.059 25 H 0.073 0.927 26 H -0.029 1.029 27 H 0.026 0.974 28 H 0.032 0.968 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.082 0.918 32 H 0.153 0.847 33 H 0.117 0.883 34 H 0.193 0.807 35 H 0.119 0.881 36 H 0.160 0.840 37 H 0.169 0.831 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.019 0.981 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 17.469 -13.680 0.677 22.198 hybrid contribution -0.515 1.502 0.207 1.601 sum 16.954 -12.178 0.884 20.893 Atomic orbital electron populations 1.70104 1.07910 1.27845 1.51891 1.25946 0.95691 1.03345 0.94817 0.85326 0.79223 0.78479 0.77548 1.18114 1.20896 1.20418 1.21477 0.93735 0.90792 1.49844 0.91390 1.19377 0.90167 0.89200 0.93264 1.62266 1.27113 1.03077 1.33450 1.22242 0.95935 0.89551 1.00240 1.22132 0.95289 0.98744 0.88862 1.61949 1.26140 1.02674 1.37212 1.20694 0.95948 0.97642 0.84697 1.26275 0.87349 0.93549 1.00373 1.74933 1.22895 1.21560 0.97632 1.78593 0.99498 1.12746 1.19720 1.78700 1.20949 1.11960 0.97610 1.48157 1.19480 1.30671 1.08593 1.23090 0.87589 0.97247 1.01106 1.23564 0.96228 1.00196 0.99068 1.23665 0.90396 1.00165 1.03463 1.22273 0.95303 0.87938 1.00573 1.21922 0.95630 0.98429 0.89892 0.92749 1.02894 0.97427 0.96838 0.90191 0.87331 0.91788 0.84721 0.88308 0.80704 0.88074 0.84009 0.83077 0.88333 0.91364 0.91547 0.98075 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.16 13.29 21.45 0.28 -55.87 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 43.07 29.54 68.60 2.03 45.10 16 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.52 -28.63 8.47 25.60 0.22 -28.42 16 8 H 0.07 3.59 7.13 -2.91 -0.02 3.57 16 9 C 0.21 10.87 4.72 85.55 0.40 11.27 16 10 N -0.53 -21.89 4.70 -900.30 -4.23 -26.13 16 11 C 0.05 1.64 5.61 86.31 0.48 2.12 16 12 C 0.08 1.74 5.61 86.31 0.48 2.23 16 13 N -0.55 -13.27 4.70 -900.29 -4.23 -17.50 16 14 C 0.14 2.42 5.24 85.56 0.45 2.87 16 15 C 0.20 4.85 6.77 138.14 0.94 5.78 16 16 N -0.32 -9.94 12.36 -50.46 -0.62 -10.56 16 17 N -0.11 -3.68 13.43 37.01 0.50 -3.18 16 18 N -0.11 -2.98 12.69 37.02 0.47 -2.51 16 19 N -0.27 -5.90 3.30 -317.81 -1.05 -6.95 16 20 C 0.01 0.15 5.36 44.99 0.24 0.39 16 21 C -0.15 -1.66 10.16 30.62 0.31 -1.35 16 22 C -0.14 -1.12 10.46 30.62 0.32 -0.80 16 23 C 0.07 1.75 4.14 86.31 0.36 2.10 16 24 C 0.07 2.63 5.43 86.31 0.47 3.10 16 25 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 26 H -0.05 -2.76 8.12 -2.38 -0.02 -2.78 16 27 H 0.01 0.43 8.03 -2.39 -0.02 0.41 16 28 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.08 2.59 8.07 -2.39 -0.02 2.57 16 30 H 0.11 1.88 8.07 -2.39 -0.02 1.86 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.13 1.89 8.03 -2.39 -0.02 1.87 16 33 H 0.10 1.05 7.82 -2.39 -0.02 1.03 16 34 H 0.18 1.87 5.50 -2.39 -0.01 1.85 16 35 H 0.10 1.47 7.85 -2.39 -0.02 1.45 16 36 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.15 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.47 7.36 -2.39 -0.02 1.46 16 40 H 0.07 1.69 5.57 -2.39 -0.01 1.68 16 41 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 42 H 0.07 2.91 6.79 -2.39 -0.02 2.89 16 Total: -1.00 -74.31 338.24 -0.71 -75.01 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: 1.02 Total: 2.83 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 5.13 Total: -0.24 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -8.88 Total: -122.70 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -74.31 -0.71 -75.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175504.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.293 kcal (2) G-P(sol) polarization free energy of solvation -74.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds