Wall clock time and date at job start Tue Mar 31 2020 03:04:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31611 * 1
3 3 Si 1.86802 * 119.99662 * 2 1
4 4 H 1.48502 * 109.46977 * 179.97438 * 3 2 1
5 5 H 1.48498 * 109.47280 * 299.99554 * 3 2 1
6 6 H 1.48500 * 109.47346 * 60.00145 * 3 2 1
7 7 C 1.38814 * 120.00288 * 179.97438 * 2 1 3
8 8 H 1.07999 * 119.99560 * 155.78230 * 7 2 1
9 9 N 1.36935 * 119.99847 * 335.78008 * 7 2 1
10 10 C 1.46496 * 120.00252 * 326.91748 * 9 7 2
11 11 C 1.50692 * 109.47272 * 275.87688 * 10 9 7
12 12 O 1.20831 * 119.99883 * 0.02562 * 11 10 9
13 13 O 1.34227 * 120.00454 * 179.97438 * 11 10 9
14 14 S 1.65607 * 119.99338 * 146.91375 * 9 7 2
15 15 O 1.42099 * 104.27732 * 26.07485 * 14 9 7
16 16 O 1.42109 * 104.27233 * 153.93208 * 14 9 7
17 17 C 1.81396 * 104.45028 * 269.99979 * 14 9 7
18 18 C 1.52997 * 109.47025 * 180.02562 * 17 14 9
19 19 H 1.09004 * 110.75425 * 57.02298 * 18 17 14
20 20 C 1.55307 * 110.84890 * 180.71687 * 18 17 14
21 21 C 1.54948 * 100.94325 * 152.32527 * 20 18 17
22 22 O 1.43650 * 105.13275 * 323.55430 * 21 20 18
23 23 C 1.43231 * 109.97145 * 24.42900 * 22 21 20
24 24 H 0.96998 * 120.00945 * 0.02562 * 1 2 3
25 25 H 1.09001 * 109.46897 * 155.87634 * 10 9 7
26 26 H 1.08999 * 109.46968 * 35.88300 * 10 9 7
27 27 H 0.96702 * 117.00483 * 180.02562 * 13 11 10
28 28 H 1.08996 * 109.47329 * 300.00394 * 17 14 9
29 29 H 1.09007 * 109.47036 * 60.00608 * 17 14 9
30 30 H 1.08997 * 111.12780 * 270.24428 * 20 18 17
31 31 H 1.09003 * 111.12514 * 34.40243 * 20 18 17
32 32 H 1.09004 * 110.31107 * 204.64397 * 21 20 18
33 33 H 1.08988 * 110.31218 * 82.46933 * 21 20 18
34 34 H 1.09001 * 109.83227 * 238.77101 * 23 22 21
35 35 H 1.09000 * 109.90653 * 117.84583 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2500 1.6178 0.0000
4 1 3.7101 1.3465 0.0006
5 1 1.8913 2.3965 -1.2125
6 1 1.8913 2.3965 1.2125
7 6 2.0102 -1.2021 0.0005
8 1 3.0189 -1.2433 -0.3831
9 7 1.4160 -2.3356 0.4876
10 6 0.4640 -2.2447 1.5973
11 6 1.2153 -2.2286 2.9035
12 8 2.4222 -2.2866 2.9071
13 8 0.5439 -2.1487 4.0631
14 16 1.7735 -3.8092 -0.1782
15 8 3.0768 -3.6424 -0.7193
16 8 1.5288 -4.7362 0.8707
17 6 0.5544 -4.0139 -1.5058
18 6 0.7827 -5.3553 -2.2054
19 1 0.7299 -6.1772 -1.4914
20 6 -0.2345 -5.5557 -3.3618
21 6 0.5729 -6.4810 -4.3067
22 8 1.9318 -6.0264 -4.2055
23 6 2.1336 -5.3624 -2.9526
24 1 -0.4851 0.8399 -0.0004
25 1 -0.2050 -3.1049 1.5735
26 1 -0.1187 -1.3285 1.5020
27 1 1.0691 -2.1412 4.8750
28 1 -0.4501 -3.9911 -1.0834
29 1 0.6636 -3.2042 -2.2274
30 1 -1.1396 -6.0492 -3.0077
31 1 -0.4700 -4.6082 -3.8465
32 1 0.2155 -6.3799 -5.3315
33 1 0.4953 -7.5174 -3.9785
34 1 2.4658 -4.3388 -3.1258
35 1 2.8786 -5.8982 -2.3644
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000739085275.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:04:27
Heat of formation + Delta-G solvation = -201.339306 kcal
Electronic energy + Delta-G solvation = -22894.302739 eV
Core-core repulsion = 19213.049240 eV
Total energy + Delta-G solvation = -3681.253499 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 293.086 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-39.40396 -39.24208 -36.06362 -35.88919 -35.03234 -34.68700 -33.42442 -31.82403
-29.76392 -27.82626 -26.23330 -24.40788 -22.35632 -21.11116 -20.60758 -18.61777
-17.39514 -17.25180 -16.88717 -16.60577 -15.88290 -15.57951 -15.05083 -14.97996
-14.84264 -14.62807 -14.48571 -13.64840 -13.26858 -12.94298 -12.61003 -12.25563
-12.00224 -11.87483 -11.78587 -11.32308 -11.25000 -11.20040 -10.93580 -10.91703
-10.82745 -10.77821 -10.66608 -10.58251 -10.35366 -9.86315 -9.59805 -9.43040
-9.37149 -8.11840 -6.78370 -4.29188 1.35573 3.00546 3.08409 3.11855
3.21019 3.59638 3.92807 3.96789 4.15525 4.52170 4.55699 4.78626
4.93390 5.11401 5.24385 5.29802 5.36958 5.52719 5.72940 5.75268
5.80258 5.93548 5.99147 6.05091 6.11575 6.21665 6.45000 6.53128
6.90316 7.07678 7.16370 7.23308 8.10766 8.48826 8.69277 8.95660
10.19679
Molecular weight = 293.09amu
Principal moments of inertia in cm(-1)
A = 0.017767 B = 0.006303 C = 0.005340
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1575.532844 B = 4441.595248 C = 5242.312071
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.834 5.834
2 C 0.031 3.969
3 Si 0.924 3.076
4 H -0.259 1.259
5 H -0.276 1.276
6 H -0.275 1.275
7 C -0.238 4.238
8 H 0.115 0.885
9 N -0.798 5.798
10 C 0.131 3.869
11 C 0.462 3.538
12 O -0.504 6.504
13 O -0.528 6.528
14 S 2.493 3.507
15 O -0.967 6.967
16 O -0.999 6.999
17 C -0.644 4.644
18 C -0.109 4.109
19 H 0.088 0.912
20 C -0.145 4.145
21 C 0.048 3.952
22 O -0.384 6.384
23 C 0.040 3.960
24 H 0.278 0.722
25 H 0.097 0.903
26 H 0.149 0.851
27 H 0.396 0.604
28 H 0.116 0.884
29 H 0.124 0.876
30 H 0.082 0.918
31 H 0.083 0.917
32 H 0.083 0.917
33 H 0.058 0.942
34 H 0.088 0.912
35 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.049 -3.673 -1.656 6.460
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.474 5.474
2 C -0.180 4.180
3 Si 0.749 3.251
4 H -0.183 1.183
5 H -0.202 1.202
6 H -0.201 1.201
7 C -0.384 4.384
8 H 0.133 0.867
9 N -0.621 5.621
10 C 0.002 3.998
11 C 0.301 3.699
12 O -0.389 6.389
13 O -0.340 6.340
14 S 2.595 3.405
15 O -0.957 6.957
16 O -0.988 6.988
17 C -0.765 4.765
18 C -0.129 4.129
19 H 0.106 0.894
20 C -0.183 4.183
21 C -0.029 4.029
22 O -0.303 6.303
23 C -0.036 4.036
24 H 0.089 0.911
25 H 0.115 0.885
26 H 0.165 0.835
27 H 0.254 0.746
28 H 0.135 0.865
29 H 0.143 0.857
30 H 0.101 0.899
31 H 0.102 0.898
32 H 0.102 0.898
33 H 0.077 0.923
34 H 0.106 0.894
35 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -4.275 -4.482 -1.987 6.505
hybrid contribution -0.229 0.979 0.361 1.069
sum -4.504 -3.503 -1.626 5.933
Atomic orbital electron populations
1.69863 1.06397 1.28997 1.42120 1.25765 0.95414 1.01091 0.95762
0.85870 0.80805 0.80161 0.78255 1.18306 1.20155 1.20085 1.19893
0.97227 0.84210 1.37087 0.86710 1.53141 1.53197 1.22724 1.33024
1.20774 0.91287 1.07684 0.80083 1.24724 0.87723 0.71461 0.85964
1.90650 1.16049 1.44814 1.87425 1.84568 1.45823 1.86413 1.17164
1.12382 0.77996 0.74906 0.75246 1.93402 1.36397 1.85190 1.80701
1.93377 1.87120 1.64764 1.53587 1.31002 1.21500 1.01908 1.22064
1.22381 0.95603 0.97013 0.97869 0.89351 1.23322 0.98474 1.00842
0.95682 1.23386 0.82102 0.97337 1.00056 1.88377 1.28344 1.76247
1.37370 1.23536 0.96253 0.99149 0.84703 0.91114 0.88497 0.83480
0.74646 0.86518 0.85728 0.89907 0.89845 0.89847 0.92343 0.89363
0.90905
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 21.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.83 -18.72 11.27 55.49 0.63 -18.10 16
2 C 0.03 0.71 4.98 -17.43 -0.09 0.63 16
3 Si 0.92 18.42 29.62 -169.99 -5.03 13.39 16
4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16
5 H -0.28 -5.37 7.11 56.52 0.40 -4.96 16
6 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16
7 C -0.24 -5.81 8.95 -15.06 -0.13 -5.94 16
8 H 0.12 2.90 7.31 -52.49 -0.38 2.52 16
9 N -0.80 -18.58 2.32 -61.09 -0.14 -18.72 16
10 C 0.13 2.79 5.47 -5.20 -0.03 2.76 16
11 C 0.46 9.87 8.36 36.00 0.30 10.17 16
12 O -0.50 -12.42 17.07 -18.75 -0.32 -12.74 16
13 O -0.53 -8.86 13.42 -39.25 -0.53 -9.38 16
14 S 2.49 55.93 5.12 -107.50 -0.55 55.38 16
15 O -0.97 -24.15 15.60 -57.54 -0.90 -25.05 16
16 O -1.00 -24.12 16.97 -57.54 -0.98 -25.10 16
17 C -0.64 -11.58 5.54 37.16 0.21 -11.38 16
18 C -0.11 -1.78 3.03 -88.67 -0.27 -2.05 16
19 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16
20 C -0.14 -1.92 6.62 -24.48 -0.16 -2.08 16
21 C 0.05 0.62 7.78 38.19 0.30 0.91 16
22 O -0.38 -6.42 11.36 -35.23 -0.40 -6.82 16
23 C 0.04 0.70 6.26 37.88 0.24 0.94 16
24 H 0.28 5.81 8.31 -40.82 -0.34 5.47 16
25 H 0.10 1.81 7.58 -51.93 -0.39 1.42 16
26 H 0.15 3.13 5.30 -51.93 -0.28 2.86 16
27 H 0.40 4.75 9.10 45.56 0.41 5.17 16
28 H 0.12 1.91 8.14 -51.93 -0.42 1.48 16
29 H 0.12 2.24 8.07 -51.92 -0.42 1.82 16
30 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16
31 H 0.08 1.09 8.04 -51.93 -0.42 0.68 16
32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16
33 H 0.06 0.67 8.14 -51.94 -0.42 0.24 16
34 H 0.09 1.63 7.39 -51.93 -0.38 1.25 16
35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16
LS Contribution 311.01 15.07 4.69 4.69
Total: -1.00 -31.00 311.01 -6.70 -37.71
By element:
Atomic # 1 Polarization: 14.32 SS G_CDS: -3.53 Total: 10.79 kcal
Atomic # 6 Polarization: -6.40 SS G_CDS: 0.36 Total: -6.04 kcal
Atomic # 7 Polarization: -37.30 SS G_CDS: 0.48 Total: -36.82 kcal
Atomic # 8 Polarization: -75.97 SS G_CDS: -3.12 Total: -79.09 kcal
Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal
Atomic # 16 Polarization: 55.93 SS G_CDS: -0.55 Total: 55.38 kcal
Total LS contribution 4.69 Total: 4.69 kcal
Total: -31.00 -6.70 -37.71 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000739085275.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -163.631 kcal
(2) G-P(sol) polarization free energy of solvation -31.003 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.635 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.708 kcal
(6) G-S(sol) free energy of system = (1) + (5) -201.339 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds