Wall clock time and date at job start Tue Mar 31 2020 03:04:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31611 * 1
3 3 Si 1.86802 * 119.99662 * 2 1
4 4 H 1.48502 * 109.46977 * 179.97438 * 3 2 1
5 5 H 1.48498 * 109.47280 * 299.99554 * 3 2 1
6 6 H 1.48500 * 109.47346 * 60.00145 * 3 2 1
7 7 C 1.38814 * 120.00288 * 179.97438 * 2 1 3
8 8 H 1.07999 * 119.99560 * 155.78230 * 7 2 1
9 9 N 1.36935 * 119.99847 * 335.78008 * 7 2 1
10 10 C 1.46496 * 120.00252 * 326.91748 * 9 7 2
11 11 C 1.50692 * 109.47272 * 275.87688 * 10 9 7
12 12 O 1.20831 * 119.99883 * 0.02562 * 11 10 9
13 13 O 1.34227 * 120.00454 * 179.97438 * 11 10 9
14 14 S 1.65607 * 119.99338 * 146.91375 * 9 7 2
15 15 O 1.42099 * 104.27732 * 26.07485 * 14 9 7
16 16 O 1.42109 * 104.27233 * 153.93208 * 14 9 7
17 17 C 1.81396 * 104.45028 * 269.99979 * 14 9 7
18 18 C 1.52997 * 109.47025 * 180.02562 * 17 14 9
19 19 H 1.09004 * 110.75425 * 57.02298 * 18 17 14
20 20 C 1.55307 * 110.84890 * 180.71687 * 18 17 14
21 21 C 1.54948 * 100.94325 * 152.32527 * 20 18 17
22 22 O 1.43650 * 105.13275 * 323.55430 * 21 20 18
23 23 C 1.43231 * 109.97145 * 24.42900 * 22 21 20
24 24 H 0.96998 * 120.00945 * 0.02562 * 1 2 3
25 25 H 1.09001 * 109.46897 * 155.87634 * 10 9 7
26 26 H 1.08999 * 109.46968 * 35.88300 * 10 9 7
27 27 H 0.96702 * 117.00483 * 180.02562 * 13 11 10
28 28 H 1.08996 * 109.47329 * 300.00394 * 17 14 9
29 29 H 1.09007 * 109.47036 * 60.00608 * 17 14 9
30 30 H 1.08997 * 111.12780 * 270.24428 * 20 18 17
31 31 H 1.09003 * 111.12514 * 34.40243 * 20 18 17
32 32 H 1.09004 * 110.31107 * 204.64397 * 21 20 18
33 33 H 1.08988 * 110.31218 * 82.46933 * 21 20 18
34 34 H 1.09001 * 109.83227 * 238.77101 * 23 22 21
35 35 H 1.09000 * 109.90653 * 117.84583 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2500 1.6178 0.0000
4 1 3.7101 1.3465 0.0006
5 1 1.8913 2.3965 -1.2125
6 1 1.8913 2.3965 1.2125
7 6 2.0102 -1.2021 0.0005
8 1 3.0189 -1.2433 -0.3831
9 7 1.4160 -2.3356 0.4876
10 6 0.4640 -2.2447 1.5973
11 6 1.2153 -2.2286 2.9035
12 8 2.4222 -2.2866 2.9071
13 8 0.5439 -2.1487 4.0631
14 16 1.7735 -3.8092 -0.1782
15 8 3.0768 -3.6424 -0.7193
16 8 1.5288 -4.7362 0.8707
17 6 0.5544 -4.0139 -1.5058
18 6 0.7827 -5.3553 -2.2054
19 1 0.7299 -6.1772 -1.4914
20 6 -0.2345 -5.5557 -3.3618
21 6 0.5729 -6.4810 -4.3067
22 8 1.9318 -6.0264 -4.2055
23 6 2.1336 -5.3624 -2.9526
24 1 -0.4851 0.8399 -0.0004
25 1 -0.2050 -3.1049 1.5735
26 1 -0.1187 -1.3285 1.5020
27 1 1.0691 -2.1412 4.8750
28 1 -0.4501 -3.9911 -1.0834
29 1 0.6636 -3.2042 -2.2274
30 1 -1.1396 -6.0492 -3.0077
31 1 -0.4700 -4.6082 -3.8465
32 1 0.2155 -6.3799 -5.3315
33 1 0.4953 -7.5174 -3.9785
34 1 2.4658 -4.3388 -3.1258
35 1 2.8786 -5.8982 -2.3644
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000739085275.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:04:26
Heat of formation + Delta-G solvation = -225.551531 kcal
Electronic energy + Delta-G solvation = -22895.352660 eV
Core-core repulsion = 19213.049240 eV
Total energy + Delta-G solvation = -3682.303420 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 293.086 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-41.03838 -40.46238 -37.80215 -37.68066 -36.68571 -36.60095 -34.75970 -33.52992
-30.90229 -29.50147 -27.69329 -26.13183 -23.45608 -22.71404 -21.92462 -20.35525
-19.06539 -18.98290 -18.54085 -17.94977 -17.37483 -17.00082 -16.72819 -16.64071
-16.48597 -16.22637 -15.81914 -15.26427 -14.63138 -14.22866 -14.17023 -13.76298
-13.56294 -13.45302 -13.19913 -13.05255 -12.87893 -12.84090 -12.62846 -12.49197
-12.37604 -12.28470 -12.14996 -12.06375 -11.86475 -11.59410 -11.23985 -11.07628
-10.59548 -9.81894 -8.46893 -6.07872 -0.38446 1.39067 1.43490 1.49167
1.60571 1.95915 2.35449 2.49008 2.78815 2.84170 3.26226 3.26829
3.50658 3.64249 3.81509 4.14014 4.17642 4.19218 4.29985 4.41367
4.51034 4.64370 4.72094 4.79844 4.86685 4.91793 4.95416 5.16825
5.23009 5.53639 5.72823 5.90211 6.35277 6.74425 7.15751 7.24384
8.53128
Molecular weight = 293.09amu
Principal moments of inertia in cm(-1)
A = 0.017767 B = 0.006303 C = 0.005340
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1575.532844 B = 4441.595248 C = 5242.312071
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.847 5.847
2 C 0.013 3.987
3 Si 0.967 3.033
4 H -0.276 1.276
5 H -0.264 1.264
6 H -0.270 1.270
7 C -0.282 4.282
8 H 0.087 0.913
9 N -0.817 5.817
10 C 0.122 3.878
11 C 0.462 3.538
12 O -0.546 6.546
13 O -0.511 6.511
14 S 2.511 3.489
15 O -1.000 7.000
16 O -1.016 7.016
17 C -0.616 4.616
18 C -0.118 4.118
19 H 0.099 0.901
20 C -0.136 4.136
21 C 0.039 3.961
22 O -0.401 6.401
23 C 0.036 3.964
24 H 0.285 0.715
25 H 0.121 0.879
26 H 0.150 0.850
27 H 0.419 0.581
28 H 0.145 0.855
29 H 0.129 0.871
30 H 0.113 0.887
31 H 0.085 0.915
32 H 0.108 0.892
33 H 0.077 0.923
34 H 0.070 0.930
35 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.315 -4.487 -2.293 8.882
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.486 5.486
2 C -0.197 4.197
3 Si 0.791 3.209
4 H -0.201 1.201
5 H -0.189 1.189
6 H -0.195 1.195
7 C -0.424 4.424
8 H 0.105 0.895
9 N -0.640 5.640
10 C -0.007 4.007
11 C 0.304 3.696
12 O -0.436 6.436
13 O -0.324 6.324
14 S 2.617 3.383
15 O -0.991 6.991
16 O -1.007 7.007
17 C -0.743 4.743
18 C -0.138 4.138
19 H 0.117 0.883
20 C -0.174 4.174
21 C -0.037 4.037
22 O -0.321 6.321
23 C -0.041 4.041
24 H 0.095 0.905
25 H 0.138 0.862
26 H 0.166 0.834
27 H 0.280 0.720
28 H 0.163 0.837
29 H 0.147 0.853
30 H 0.132 0.868
31 H 0.104 0.896
32 H 0.126 0.874
33 H 0.095 0.905
34 H 0.088 0.912
35 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -6.539 -5.211 -2.547 8.741
hybrid contribution 0.406 1.004 0.537 1.209
sum -6.133 -4.207 -2.010 7.704
Atomic orbital electron populations
1.69846 1.06489 1.29719 1.42511 1.26099 0.96066 1.02187 0.95302
0.85262 0.78944 0.77981 0.78750 1.20061 1.18901 1.19508 1.19574
0.97065 0.85822 1.39945 0.89500 1.52839 1.54399 1.22102 1.34700
1.20982 0.91336 1.08705 0.79638 1.24847 0.87154 0.70447 0.87176
1.90636 1.17757 1.46991 1.88200 1.84499 1.45356 1.85376 1.17193
1.10564 0.77822 0.74114 0.75846 1.93378 1.38786 1.85577 1.81337
1.93365 1.87425 1.64910 1.54956 1.30630 1.20343 1.03626 1.19732
1.22522 0.96239 0.95865 0.99130 0.88283 1.23349 0.98579 1.01497
0.93975 1.23721 0.80114 0.98149 1.01672 1.88360 1.30875 1.76283
1.36620 1.23458 0.97000 0.98224 0.85452 0.90464 0.86161 0.83388
0.71989 0.83698 0.85303 0.86849 0.89595 0.87372 0.90489 0.91173
0.91875
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 28.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.85 -37.58 11.27 21.65 0.24 -37.33 16
2 C 0.01 0.61 4.98 84.86 0.42 1.03 16
3 Si 0.97 38.10 29.62 68.60 2.03 40.13 16
4 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16
5 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16
6 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16
7 C -0.28 -14.16 8.95 84.03 0.75 -13.41 16
8 H 0.09 4.69 7.31 -2.91 -0.02 4.67 16
9 N -0.82 -38.36 2.32 -347.20 -0.80 -39.16 16
10 C 0.12 5.13 5.47 85.63 0.47 5.60 16
11 C 0.46 19.63 8.36 71.23 0.60 20.23 16
12 O -0.55 -27.43 17.07 21.95 0.37 -27.05 16
13 O -0.51 -16.32 13.42 -51.39 -0.69 -17.01 16
14 S 2.51 112.52 5.12 -56.49 -0.29 112.24 16
15 O -1.00 -51.51 15.60 -127.65 -1.99 -53.50 16
16 O -1.02 -48.45 16.97 -127.65 -2.17 -50.62 16
17 C -0.62 -20.82 5.54 71.98 0.40 -20.42 16
18 C -0.12 -3.54 3.03 -9.53 -0.03 -3.56 16
19 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16
20 C -0.14 -3.03 6.62 32.05 0.21 -2.81 16
21 C 0.04 0.87 7.78 72.65 0.57 1.43 16
22 O -0.40 -12.73 11.36 -148.98 -1.69 -14.42 16
23 C 0.04 1.22 6.26 72.45 0.45 1.67 16
24 H 0.28 11.64 8.31 -92.71 -0.77 10.87 16
25 H 0.12 4.31 7.58 -2.39 -0.02 4.30 16
26 H 0.15 6.22 5.30 -2.39 -0.01 6.21 16
27 H 0.42 9.28 9.10 -74.06 -0.67 8.60 16
28 H 0.14 4.19 8.14 -2.39 -0.02 4.17 16
29 H 0.13 4.41 8.07 -2.39 -0.02 4.39 16
30 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16
31 H 0.09 1.90 8.04 -2.39 -0.02 1.88 16
32 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16
33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16
34 H 0.07 2.62 7.39 -2.39 -0.02 2.61 16
35 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16
Total: -1.00 -67.91 311.01 -0.69 -68.60
By element:
Atomic # 1 Polarization: 27.92 SS G_CDS: 0.45 Total: 28.37 kcal
Atomic # 6 Polarization: -14.08 SS G_CDS: 3.84 Total: -10.25 kcal
Atomic # 7 Polarization: -75.93 SS G_CDS: -0.56 Total: -76.49 kcal
Atomic # 8 Polarization: -156.44 SS G_CDS: -6.17 Total: -162.60 kcal
Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.13 kcal
Atomic # 16 Polarization: 112.52 SS G_CDS: -0.29 Total: 112.24 kcal
Total: -67.91 -0.69 -68.60 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000739085275.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -156.948 kcal
(2) G-P(sol) polarization free energy of solvation -67.911 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.859 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.692 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.604 kcal
(6) G-S(sol) free energy of system = (1) + (5) -225.552 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds