Wall clock time and date at job start Tue Mar 31 2020 03:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86807 * 119.99846 * 2 1 4 4 H 1.48506 * 109.46793 * 85.02105 * 3 2 1 5 5 H 1.48503 * 109.46915 * 205.01731 * 3 2 1 6 6 H 1.48494 * 109.47089 * 325.02074 * 3 2 1 7 7 C 1.38808 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00278 * 222.38529 * 7 2 1 9 9 N 1.36941 * 119.99920 * 42.38196 * 7 2 1 10 10 C 1.46494 * 119.99604 * 28.45965 * 9 7 2 11 11 C 1.50700 * 109.47348 * 82.99299 * 10 9 7 12 12 O 1.20826 * 120.00011 * 359.97438 * 11 10 9 13 13 O 1.34225 * 120.00467 * 179.97438 * 11 10 9 14 14 S 1.65595 * 119.99996 * 208.46085 * 9 7 2 15 15 O 1.42095 * 104.27713 * 206.07031 * 14 9 7 16 16 O 1.42103 * 104.28100 * 333.92716 * 14 9 7 17 17 C 1.81405 * 104.45049 * 89.99978 * 14 9 7 18 18 C 1.53000 * 109.47091 * 179.97438 * 17 14 9 19 19 H 1.09003 * 110.27296 * 59.30127 * 18 17 14 20 20 C 1.54941 * 110.30856 * 181.39023 * 18 17 14 21 21 C 1.55412 * 100.89336 * 155.29140 * 20 18 17 22 22 C 1.54379 * 102.30753 * 325.98765 * 21 20 18 23 23 O 1.43242 * 107.58921 * 21.28944 * 22 21 20 24 24 H 0.96999 * 120.00091 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46873 * 202.98785 * 10 9 7 26 26 H 1.08998 * 109.47512 * 322.98695 * 10 9 7 27 27 H 0.96695 * 117.00632 * 179.97438 * 13 11 10 28 28 H 1.08999 * 109.46658 * 299.99815 * 17 14 9 29 29 H 1.09000 * 109.47013 * 59.99989 * 17 14 9 30 30 H 1.09010 * 111.12789 * 273.27661 * 20 18 17 31 31 H 1.08997 * 111.12777 * 37.44155 * 20 18 17 32 32 H 1.09009 * 110.88407 * 207.75310 * 21 20 18 33 33 H 1.08998 * 110.93953 * 84.25246 * 21 20 18 34 34 H 1.08998 * 109.83594 * 261.77201 * 22 21 20 35 35 H 1.09005 * 109.82940 * 140.80113 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3923 2.1072 1.3949 5 1 3.5964 1.4121 -0.5921 6 1 1.5041 2.6200 -0.8026 7 6 2.0102 -1.2021 0.0005 8 1 2.8786 -1.3240 0.6311 9 7 1.5940 -2.2334 -0.7984 10 6 0.8845 -1.9510 -2.0486 11 6 1.8832 -1.6465 -3.1353 12 8 3.0663 -1.6631 -2.8904 13 8 1.4586 -1.3568 -4.3752 14 16 1.8926 -3.7997 -0.3513 15 8 1.9205 -4.5152 -1.5787 16 8 3.0465 -3.7148 0.4736 17 6 0.4424 -4.2747 0.6296 18 6 0.6002 -5.7201 1.1060 19 1 1.5011 -5.8221 1.7111 20 6 -0.6451 -6.1578 1.9174 21 6 -0.5930 -7.6993 1.7265 22 6 -0.0267 -7.8350 0.2968 23 8 0.6509 -6.6129 -0.0181 24 1 -0.4850 -0.8400 -0.0004 25 1 0.2910 -2.8197 -2.3337 26 1 0.2277 -1.0927 -1.9078 27 1 2.1364 -1.1680 -5.0385 28 1 0.3555 -3.6147 1.4926 29 1 -0.4546 -4.1907 0.0160 30 1 -0.5443 -5.8870 2.9685 31 1 -1.5578 -5.7407 1.4919 32 1 -1.5911 -8.1328 1.7912 33 1 0.0757 -8.1595 2.4540 34 1 -0.8406 -7.9991 -0.4094 35 1 0.6748 -8.6682 0.2544 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739087108.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:00 Heat of formation + Delta-G solvation = -198.215692 kcal Electronic energy + Delta-G solvation = -22964.912982 eV Core-core repulsion = 19283.794933 eV Total energy + Delta-G solvation = -3681.118049 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.086 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.47900 -39.27282 -36.25410 -35.67607 -35.12703 -34.46270 -32.19509 -31.79231 -31.42012 -27.82461 -26.03714 -24.12359 -21.73666 -21.29106 -21.02557 -18.91882 -17.52321 -17.28671 -16.86495 -16.61271 -16.09043 -15.68842 -15.11985 -15.06696 -14.83465 -14.45817 -13.97780 -13.73427 -13.32309 -12.81948 -12.69678 -12.32103 -12.06048 -11.76010 -11.71391 -11.50728 -11.19007 -11.16022 -10.93077 -10.83736 -10.79369 -10.68211 -10.61531 -10.35599 -10.27433 -9.95228 -9.54852 -9.39406 -9.17421 -8.29500 -7.21649 -4.13956 1.47007 3.00453 3.13397 3.25330 3.48898 3.60881 3.87270 3.95166 4.19110 4.45295 4.49818 4.76032 4.88944 5.11559 5.18257 5.31326 5.38320 5.48190 5.59380 5.67685 5.70591 5.79956 5.82449 5.92767 6.01991 6.08946 6.16259 6.37011 6.72617 7.11732 7.12195 7.63974 7.89400 8.58950 8.67454 8.78464 10.02555 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.020414 B = 0.006116 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.248507 B = 4576.895751 C = 5247.109779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.015 3.985 3 Si 1.065 2.935 4 H -0.277 1.277 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.325 4.325 8 H 0.112 0.888 9 N -0.802 5.802 10 C 0.131 3.869 11 C 0.466 3.534 12 O -0.493 6.493 13 O -0.527 6.527 14 S 2.476 3.524 15 O -0.987 6.987 16 O -0.975 6.975 17 C -0.663 4.663 18 C 0.094 3.906 19 H 0.076 0.924 20 C -0.144 4.144 21 C -0.158 4.158 22 C 0.049 3.951 23 O -0.373 6.373 24 H 0.283 0.717 25 H 0.106 0.894 26 H 0.117 0.883 27 H 0.399 0.601 28 H 0.126 0.874 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.329 -5.600 0.556 7.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.203 4.203 3 Si 0.888 3.112 4 H -0.202 1.202 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.476 4.476 8 H 0.129 0.871 9 N -0.624 5.624 10 C 0.001 3.999 11 C 0.304 3.696 12 O -0.378 6.378 13 O -0.339 6.339 14 S 2.579 3.421 15 O -0.976 6.976 16 O -0.965 6.965 17 C -0.781 4.781 18 C 0.036 3.964 19 H 0.094 0.906 20 C -0.182 4.182 21 C -0.196 4.196 22 C -0.027 4.027 23 O -0.292 6.292 24 H 0.094 0.906 25 H 0.124 0.876 26 H 0.134 0.866 27 H 0.257 0.743 28 H 0.145 0.855 29 H 0.131 0.869 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.713 -4.924 0.529 6.836 hybrid contribution -0.311 -1.658 0.208 1.700 sum -5.024 -6.582 0.738 8.313 Atomic orbital electron populations 1.70918 1.07584 1.32084 1.33880 1.26852 0.95514 1.03735 0.94168 0.83591 0.76170 0.73277 0.78119 1.20242 1.19777 1.20037 1.20581 1.10706 0.90861 1.25427 0.87078 1.53744 1.66535 1.21746 1.20329 1.20546 0.92556 1.04805 0.81946 1.24295 0.90406 0.72734 0.82157 1.90675 1.18801 1.46616 1.81678 1.84545 1.45356 1.82550 1.21445 1.13945 0.79113 0.74313 0.74698 1.93355 1.87828 1.73533 1.42906 1.93352 1.46969 1.85484 1.70698 1.31160 1.28104 1.01389 1.17442 1.22512 0.98168 0.88469 0.87267 0.90602 1.23310 0.98934 0.94679 1.01323 1.23171 1.02146 0.96879 0.97402 1.23111 0.96341 0.87798 0.95481 1.88586 1.76941 1.26415 1.37274 0.90560 0.87643 0.86564 0.74320 0.85537 0.86887 0.89816 0.90085 0.90100 0.90549 0.91319 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -18.97 12.38 55.49 0.69 -18.29 16 2 C 0.02 0.35 4.50 -17.44 -0.08 0.27 16 3 Si 1.07 21.49 30.06 -169.99 -5.11 16.38 16 4 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.28 -5.42 7.11 56.52 0.40 -5.01 16 7 C -0.33 -8.13 8.74 -15.06 -0.13 -8.26 16 8 H 0.11 2.94 7.36 -52.48 -0.39 2.55 16 9 N -0.80 -19.15 2.23 -61.09 -0.14 -19.28 16 10 C 0.13 2.80 5.31 -5.20 -0.03 2.77 16 11 C 0.47 10.07 8.35 36.01 0.30 10.37 16 12 O -0.49 -12.37 17.03 -18.75 -0.32 -12.69 16 13 O -0.53 -8.89 13.42 -39.25 -0.53 -9.41 16 14 S 2.48 59.71 5.17 -107.50 -0.56 59.15 16 15 O -0.99 -25.82 16.43 -60.28 -0.99 -26.81 16 16 O -0.98 -26.65 16.81 -57.54 -0.97 -27.62 16 17 C -0.66 -12.73 5.93 37.16 0.22 -12.51 16 18 C 0.09 1.67 3.46 -25.71 -0.09 1.58 16 19 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 20 C -0.14 -1.92 6.58 -24.43 -0.16 -2.08 16 21 C -0.16 -1.78 7.02 -24.73 -0.17 -1.95 16 22 C 0.05 0.68 7.80 37.88 0.30 0.97 16 23 O -0.37 -7.07 10.31 -36.96 -0.38 -7.46 16 24 H 0.28 6.41 7.85 -40.82 -0.32 6.09 16 25 H 0.11 1.99 7.53 -51.93 -0.39 1.60 16 26 H 0.12 2.41 5.62 -51.93 -0.29 2.11 16 27 H 0.40 4.80 9.10 45.56 0.41 5.22 16 28 H 0.13 2.30 8.14 -51.92 -0.42 1.87 16 29 H 0.11 2.00 8.14 -51.92 -0.42 1.57 16 30 H 0.08 0.98 8.14 -51.92 -0.42 0.55 16 31 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 32 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 313.51 15.07 4.72 4.72 Total: -1.00 -33.72 313.51 -6.99 -40.71 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -3.57 Total: 9.42 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 0.16 Total: -8.83 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.55 Total: -37.57 kcal Atomic # 8 Polarization: -80.80 SS G_CDS: -3.18 Total: -83.99 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.11 Total: 16.38 kcal Atomic # 16 Polarization: 59.71 SS G_CDS: -0.56 Total: 59.15 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.72 -6.99 -40.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739087108.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.508 kcal (2) G-P(sol) polarization free energy of solvation -33.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds