Wall clock time and date at job start Tue Mar 31 2020 03:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86807 * 119.99846 * 2 1 4 4 H 1.48506 * 109.46793 * 85.02105 * 3 2 1 5 5 H 1.48503 * 109.46915 * 205.01731 * 3 2 1 6 6 H 1.48494 * 109.47089 * 325.02074 * 3 2 1 7 7 C 1.38808 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00278 * 222.38529 * 7 2 1 9 9 N 1.36941 * 119.99920 * 42.38196 * 7 2 1 10 10 C 1.46494 * 119.99604 * 28.45965 * 9 7 2 11 11 C 1.50700 * 109.47348 * 82.99299 * 10 9 7 12 12 O 1.20826 * 120.00011 * 359.97438 * 11 10 9 13 13 O 1.34225 * 120.00467 * 179.97438 * 11 10 9 14 14 S 1.65595 * 119.99996 * 208.46085 * 9 7 2 15 15 O 1.42095 * 104.27713 * 206.07031 * 14 9 7 16 16 O 1.42103 * 104.28100 * 333.92716 * 14 9 7 17 17 C 1.81405 * 104.45049 * 89.99978 * 14 9 7 18 18 C 1.53000 * 109.47091 * 179.97438 * 17 14 9 19 19 H 1.09003 * 110.27296 * 59.30127 * 18 17 14 20 20 C 1.54941 * 110.30856 * 181.39023 * 18 17 14 21 21 C 1.55412 * 100.89336 * 155.29140 * 20 18 17 22 22 C 1.54379 * 102.30753 * 325.98765 * 21 20 18 23 23 O 1.43242 * 107.58921 * 21.28944 * 22 21 20 24 24 H 0.96999 * 120.00091 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46873 * 202.98785 * 10 9 7 26 26 H 1.08998 * 109.47512 * 322.98695 * 10 9 7 27 27 H 0.96695 * 117.00632 * 179.97438 * 13 11 10 28 28 H 1.08999 * 109.46658 * 299.99815 * 17 14 9 29 29 H 1.09000 * 109.47013 * 59.99989 * 17 14 9 30 30 H 1.09010 * 111.12789 * 273.27661 * 20 18 17 31 31 H 1.08997 * 111.12777 * 37.44155 * 20 18 17 32 32 H 1.09009 * 110.88407 * 207.75310 * 21 20 18 33 33 H 1.08998 * 110.93953 * 84.25246 * 21 20 18 34 34 H 1.08998 * 109.83594 * 261.77201 * 22 21 20 35 35 H 1.09005 * 109.82940 * 140.80113 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3923 2.1072 1.3949 5 1 3.5964 1.4121 -0.5921 6 1 1.5041 2.6200 -0.8026 7 6 2.0102 -1.2021 0.0005 8 1 2.8786 -1.3240 0.6311 9 7 1.5940 -2.2334 -0.7984 10 6 0.8845 -1.9510 -2.0486 11 6 1.8832 -1.6465 -3.1353 12 8 3.0663 -1.6631 -2.8904 13 8 1.4586 -1.3568 -4.3752 14 16 1.8926 -3.7997 -0.3513 15 8 1.9205 -4.5152 -1.5787 16 8 3.0465 -3.7148 0.4736 17 6 0.4424 -4.2747 0.6296 18 6 0.6002 -5.7201 1.1060 19 1 1.5011 -5.8221 1.7111 20 6 -0.6451 -6.1578 1.9174 21 6 -0.5930 -7.6993 1.7265 22 6 -0.0267 -7.8350 0.2968 23 8 0.6509 -6.6129 -0.0181 24 1 -0.4850 -0.8400 -0.0004 25 1 0.2910 -2.8197 -2.3337 26 1 0.2277 -1.0927 -1.9078 27 1 2.1364 -1.1680 -5.0385 28 1 0.3555 -3.6147 1.4926 29 1 -0.4546 -4.1907 0.0160 30 1 -0.5443 -5.8870 2.9685 31 1 -1.5578 -5.7407 1.4919 32 1 -1.5911 -8.1328 1.7912 33 1 0.0757 -8.1595 2.4540 34 1 -0.8406 -7.9991 -0.4094 35 1 0.6748 -8.6682 0.2544 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739087108.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:59 Heat of formation + Delta-G solvation = -224.917490 kcal Electronic energy + Delta-G solvation = -22966.070859 eV Core-core repulsion = 19283.794933 eV Total energy + Delta-G solvation = -3682.275926 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.15215 -40.48574 -37.94667 -37.73196 -36.80887 -36.52600 -33.56776 -33.44020 -32.65621 -29.55655 -27.33358 -25.91181 -22.83567 -22.74454 -22.44234 -20.72787 -19.29825 -19.04237 -18.47743 -18.08351 -17.74270 -17.03456 -16.79573 -16.76257 -16.47934 -15.83588 -15.61057 -15.48099 -14.55342 -14.46004 -14.06482 -13.94200 -13.50841 -13.48738 -12.94266 -12.86133 -12.80007 -12.77978 -12.73478 -12.56222 -12.42345 -12.23416 -12.07995 -11.95653 -11.80534 -11.71843 -11.25986 -10.91989 -10.65494 -10.05943 -9.03699 -6.01615 -0.37960 1.30510 1.50420 1.61880 1.88091 1.95429 2.31343 2.47985 2.67308 2.69802 3.25528 3.43748 3.50292 3.74297 3.84617 3.92769 4.04611 4.10713 4.31320 4.32923 4.42000 4.48000 4.65397 4.76697 4.81400 4.86036 4.97789 5.01040 5.17046 5.65480 5.84175 5.91664 6.01515 6.82912 6.93573 7.11106 8.23321 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.020414 B = 0.006116 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.248507 B = 4576.895751 C = 5247.109779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.001 3.999 3 Si 1.096 2.904 4 H -0.260 1.260 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.363 4.363 8 H 0.080 0.920 9 N -0.817 5.817 10 C 0.123 3.877 11 C 0.466 3.534 12 O -0.537 6.537 13 O -0.509 6.509 14 S 2.490 3.510 15 O -1.011 7.011 16 O -1.016 7.016 17 C -0.640 4.640 18 C 0.078 3.922 19 H 0.067 0.933 20 C -0.138 4.138 21 C -0.147 4.147 22 C 0.033 3.967 23 O -0.411 6.411 24 H 0.283 0.717 25 H 0.128 0.872 26 H 0.125 0.875 27 H 0.423 0.577 28 H 0.140 0.860 29 H 0.135 0.865 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.575 -6.368 0.970 9.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.215 4.215 3 Si 0.916 3.084 4 H -0.185 1.185 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.510 4.510 8 H 0.098 0.902 9 N -0.640 5.640 10 C -0.006 4.006 11 C 0.307 3.693 12 O -0.426 6.426 13 O -0.322 6.322 14 S 2.598 3.402 15 O -1.001 7.001 16 O -1.007 7.007 17 C -0.765 4.765 18 C 0.019 3.981 19 H 0.085 0.915 20 C -0.176 4.176 21 C -0.184 4.184 22 C -0.043 4.043 23 O -0.332 6.332 24 H 0.094 0.906 25 H 0.145 0.855 26 H 0.142 0.858 27 H 0.284 0.716 28 H 0.158 0.842 29 H 0.153 0.847 30 H 0.121 0.879 31 H 0.108 0.892 32 H 0.130 0.870 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.943 -5.615 0.890 8.974 hybrid contribution 0.325 -1.647 0.001 1.679 sum -6.619 -7.262 0.891 9.866 Atomic orbital electron populations 1.70954 1.07484 1.32095 1.34502 1.27574 0.95707 1.04848 0.93336 0.83185 0.74671 0.71444 0.79089 1.18450 1.21464 1.18670 1.20281 1.11180 0.92581 1.26987 0.90211 1.53329 1.68110 1.21030 1.21489 1.20796 0.92610 1.06046 0.81108 1.24401 0.89726 0.71820 0.83369 1.90662 1.20459 1.48788 1.82684 1.84475 1.45846 1.81511 1.20349 1.12310 0.79409 0.74020 0.74416 1.93328 1.88516 1.73993 1.44248 1.93311 1.49737 1.86154 1.71461 1.30820 1.25017 1.03447 1.17181 1.22696 1.00404 0.87181 0.87776 0.91472 1.23319 0.96610 0.96120 1.01560 1.23182 1.04033 0.95442 0.95756 1.23469 0.96944 0.86154 0.97703 1.88547 1.78022 1.28373 1.38249 0.90588 0.85457 0.85812 0.71593 0.84175 0.84700 0.87909 0.89249 0.87036 0.89312 0.89982 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -37.72 12.38 21.65 0.27 -37.46 16 2 C 0.00 0.03 4.50 84.86 0.38 0.41 16 3 Si 1.10 43.45 30.06 68.60 2.06 45.51 16 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 7 C -0.36 -18.71 8.74 84.03 0.73 -17.97 16 8 H 0.08 4.49 7.36 -2.91 -0.02 4.47 16 9 N -0.82 -39.61 2.23 -347.19 -0.78 -40.39 16 10 C 0.12 5.23 5.31 85.63 0.45 5.68 16 11 C 0.47 20.12 8.35 71.24 0.59 20.71 16 12 O -0.54 -27.55 17.03 21.96 0.37 -27.18 16 13 O -0.51 -16.36 13.42 -51.37 -0.69 -17.04 16 14 S 2.49 121.70 5.17 -56.49 -0.29 121.41 16 15 O -1.01 -53.39 16.43 -125.03 -2.05 -55.45 16 16 O -1.02 -57.55 16.81 -127.65 -2.15 -59.69 16 17 C -0.64 -23.67 5.93 71.98 0.43 -23.24 16 18 C 0.08 2.63 3.46 31.26 0.11 2.73 16 19 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 20 C -0.14 -3.17 6.58 32.09 0.21 -2.95 16 21 C -0.15 -2.70 7.02 31.89 0.22 -2.48 16 22 C 0.03 0.82 7.80 72.45 0.56 1.38 16 23 O -0.41 -15.05 10.31 -147.33 -1.52 -16.57 16 24 H 0.28 12.62 7.85 -92.71 -0.73 11.90 16 25 H 0.13 4.69 7.53 -2.39 -0.02 4.67 16 26 H 0.12 5.05 5.62 -2.39 -0.01 5.04 16 27 H 0.42 9.40 9.10 -74.06 -0.67 8.72 16 28 H 0.14 4.87 8.14 -2.39 -0.02 4.85 16 29 H 0.13 4.44 8.14 -2.39 -0.02 4.42 16 30 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.09 1.92 8.06 -2.39 -0.02 1.90 16 32 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 1.71 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -74.77 313.51 -0.58 -75.35 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.49 Total: 27.23 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: 3.70 Total: -15.72 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -0.51 Total: -77.84 kcal Atomic # 8 Polarization: -169.90 SS G_CDS: -6.04 Total: -175.94 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.06 Total: 45.51 kcal Atomic # 16 Polarization: 121.70 SS G_CDS: -0.29 Total: 121.41 kcal Total: -74.77 -0.58 -75.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739087108.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.567 kcal (2) G-P(sol) polarization free energy of solvation -74.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds