Wall clock time and date at job start Tue Mar 31 2020 02:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 S 1.81396 * 109.47360 * 179.97438 * 10 9 7 12 12 O 1.42094 * 110.54259 * 291.62586 * 11 10 9 13 13 O 1.42106 * 110.54167 * 68.37612 * 11 10 9 14 14 N 1.65606 * 104.45103 * 179.97438 * 11 10 9 15 15 C 1.34771 * 119.99478 * 65.00142 * 14 11 10 16 16 O 1.21283 * 120.00691 * 359.97438 * 15 14 11 17 17 C 1.50709 * 119.99452 * 180.02562 * 15 14 11 18 18 H 1.09000 * 109.59809 * 300.69984 * 17 15 14 19 19 C 1.52938 * 109.60247 * 180.37722 * 17 15 14 20 20 C 1.53708 * 112.49047 * 209.96702 * 19 17 15 21 21 S 1.83387 * 104.96838 * 2.82593 * 20 19 17 22 22 C 1.55149 * 109.60374 * 61.02411 * 17 15 14 23 23 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 27 27 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 28 28 H 0.96995 * 120.00185 * 244.99918 * 14 11 10 29 29 H 1.09003 * 108.88818 * 330.76408 * 19 17 15 30 30 H 1.09002 * 108.89080 * 89.17405 * 19 17 15 31 31 H 1.09005 * 110.33747 * 121.69770 * 20 19 17 32 32 H 1.08996 * 110.33973 * 243.84261 * 20 19 17 33 33 H 1.09003 * 111.13301 * 279.27992 * 22 17 15 34 34 H 1.08993 * 111.13388 * 43.45840 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 16 5.8354 -2.6368 -0.0001 12 8 6.3340 -2.1464 -1.2370 13 8 6.3341 -2.1466 1.2369 14 7 6.2485 -4.2405 0.0004 15 6 5.9389 -5.0164 -1.0571 16 8 5.3573 -4.5404 -2.0090 17 6 6.3144 -6.4760 -1.0563 18 1 7.3950 -6.5754 -0.9540 19 6 5.8612 -7.1231 -2.3659 20 6 5.5176 -8.6118 -2.1980 21 16 5.7326 -8.9487 -0.4082 22 6 5.6113 -7.1937 0.1259 23 1 -0.4850 0.8401 -0.0004 24 1 3.8751 -0.6798 -0.8895 25 1 3.8745 -0.6810 0.8905 26 1 3.6577 -3.1507 0.8897 27 1 3.6584 -3.1504 -0.8902 28 1 6.7133 -4.6213 0.7618 29 1 4.9801 -6.5968 -2.7331 30 1 6.6591 -7.0260 -3.1021 31 1 4.4863 -8.7987 -2.4975 32 1 6.1994 -9.2266 -2.7856 33 1 6.1492 -7.0315 1.0600 34 1 4.5714 -6.8795 0.2139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776115176.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:07 Heat of formation + Delta-G solvation = -119.032437 kcal Electronic energy + Delta-G solvation = -19612.006509 eV Core-core repulsion = 16377.074975 eV Total energy + Delta-G solvation = -3234.931534 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.059 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.62394 -36.97493 -36.00286 -35.83562 -34.72539 -34.01229 -31.54764 -30.26228 -26.26424 -25.98292 -23.32833 -21.38069 -20.59526 -19.56100 -18.36885 -17.84295 -17.08133 -16.78537 -16.35291 -15.81231 -15.30802 -15.05670 -14.67856 -14.32659 -14.22317 -13.75381 -13.39209 -12.92311 -12.75546 -12.55806 -12.35795 -12.01677 -11.99319 -11.94457 -11.83783 -11.36400 -11.29692 -11.25666 -11.05615 -10.85881 -10.48008 -10.22651 -10.04975 -9.68933 -9.40482 -8.68984 -8.12232 -6.19158 -4.20957 0.26725 1.36297 1.70476 1.94771 2.47978 3.24970 3.32111 3.35195 3.72159 3.86501 3.99027 4.20639 4.33233 4.38485 4.50874 4.61725 4.63153 4.80870 4.94332 5.11948 5.15707 5.33036 5.39464 5.45880 5.50573 5.70963 6.18685 6.39448 6.74220 6.87367 7.19990 7.49988 8.32988 8.81453 9.39807 10.93134 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.024108 B = 0.004128 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.168780 B = 6781.631912 C = 7318.022191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.520 4.520 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.568 4.568 11 S 2.562 3.438 12 O -0.937 6.937 13 O -0.952 6.952 14 N -1.056 6.056 15 C 0.543 3.457 16 O -0.480 6.480 17 C -0.112 4.112 18 H 0.122 0.878 19 C -0.126 4.126 20 C -0.068 4.068 21 S -0.280 6.280 22 C -0.070 4.070 23 H 0.267 0.733 24 H 0.031 0.969 25 H 0.034 0.966 26 H 0.128 0.872 27 H 0.136 0.864 28 H 0.430 0.570 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.956 -16.946 -0.633 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.695 3.305 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.559 4.559 8 H 0.097 0.903 9 C -0.045 4.045 10 C -0.703 4.703 11 S 2.662 3.338 12 O -0.927 6.927 13 O -0.942 6.942 14 N -0.817 5.817 15 C 0.327 3.673 16 O -0.351 6.351 17 C -0.137 4.137 18 H 0.140 0.860 19 C -0.165 4.165 20 C -0.216 4.216 21 S -0.053 6.053 22 C -0.218 4.218 23 H 0.077 0.923 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.147 0.853 27 H 0.155 0.845 28 H 0.265 0.735 29 H 0.117 0.883 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.136 0.864 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 14.196 -16.852 -0.749 22.047 hybrid contribution -0.099 1.329 -0.147 1.341 sum 14.097 -15.523 -0.896 20.988 Atomic orbital electron populations 1.69876 1.06200 1.27311 1.49777 1.24969 0.94826 0.99141 0.94062 0.86925 0.80643 0.83684 0.79199 1.19593 1.20689 1.18656 1.20797 0.87536 0.95012 1.52537 0.90332 1.19436 1.00103 0.86919 0.98029 1.30178 1.18424 1.10038 1.11616 1.06797 0.80207 0.72211 0.74581 1.93608 1.78473 1.76098 1.44508 1.93607 1.79507 1.76148 1.44951 1.55377 1.66705 1.32765 1.26839 1.20307 0.77026 0.89000 0.80991 1.90926 1.37398 1.74400 1.32333 1.22383 1.03924 0.91198 0.96179 0.85959 1.21909 1.05038 0.93342 0.96192 1.23972 1.05829 0.98243 0.93559 1.87947 1.96210 1.12656 1.08524 1.24375 1.04964 0.92496 0.99964 0.92310 0.95111 0.94828 0.85339 0.84532 0.73473 0.88339 0.89247 0.88569 0.87905 0.86401 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.96 55.43 0.77 -26.12 16 2 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 21.33 27.47 -169.99 -4.67 16.66 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.52 -14.44 9.66 -34.44 -0.33 -14.78 16 8 H 0.08 2.29 7.99 -52.49 -0.42 1.88 16 9 C -0.01 -0.13 4.05 -27.88 -0.11 -0.24 16 10 C -0.57 -10.34 5.82 37.16 0.22 -10.12 16 11 S 2.56 41.75 5.11 -107.50 -0.55 41.20 16 12 O -0.94 -18.65 17.04 -64.78 -1.10 -19.76 16 13 O -0.95 -16.98 18.08 -57.54 -1.04 -18.02 16 14 N -1.06 -11.37 5.52 31.22 0.17 -11.20 16 15 C 0.54 6.15 6.87 -10.98 -0.08 6.07 16 16 O -0.48 -7.37 13.48 -11.55 -0.16 -7.53 16 17 C -0.11 -0.85 2.90 -90.66 -0.26 -1.11 16 18 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 19 C -0.13 -0.97 5.61 -26.39 -0.15 -1.11 16 20 C -0.07 -0.46 7.38 37.53 0.28 -0.18 16 21 S -0.28 -2.35 23.22 -107.50 -2.50 -4.84 16 22 C -0.07 -0.48 6.72 38.29 0.26 -0.22 16 23 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.03 0.72 7.57 -51.93 -0.39 0.33 16 25 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 26 H 0.13 2.01 8.14 -51.92 -0.42 1.58 16 27 H 0.14 2.46 7.19 -51.92 -0.37 2.09 16 28 H 0.43 2.82 8.74 -34.48 -0.30 2.52 16 29 H 0.10 0.92 6.86 -51.93 -0.36 0.57 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.12 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 309.91 15.07 4.67 4.67 Total: -1.00 -36.17 309.91 -9.02 -45.19 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -4.34 Total: -0.54 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -0.28 Total: -19.71 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.95 Total: -37.32 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -2.30 Total: -45.30 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Atomic # 16 Polarization: 39.40 SS G_CDS: -3.05 Total: 36.36 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -36.17 -9.02 -45.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776115176.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.846 kcal (2) G-P(sol) polarization free energy of solvation -36.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds