Wall clock time and date at job start Tue Mar 31 2020 02:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 S 1.81396 * 109.47360 * 179.97438 * 10 9 7 12 12 O 1.42094 * 110.54259 * 291.62586 * 11 10 9 13 13 O 1.42106 * 110.54167 * 68.37612 * 11 10 9 14 14 N 1.65606 * 104.45103 * 179.97438 * 11 10 9 15 15 C 1.34771 * 119.99478 * 65.00142 * 14 11 10 16 16 O 1.21283 * 120.00691 * 359.97438 * 15 14 11 17 17 C 1.50709 * 119.99452 * 180.02562 * 15 14 11 18 18 H 1.09000 * 109.59809 * 300.69984 * 17 15 14 19 19 C 1.52938 * 109.60247 * 180.37722 * 17 15 14 20 20 C 1.53708 * 112.49047 * 209.96702 * 19 17 15 21 21 S 1.83387 * 104.96838 * 2.82593 * 20 19 17 22 22 C 1.55149 * 109.60374 * 61.02411 * 17 15 14 23 23 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 27 27 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 28 28 H 0.96995 * 120.00185 * 244.99918 * 14 11 10 29 29 H 1.09003 * 108.88818 * 330.76408 * 19 17 15 30 30 H 1.09002 * 108.89080 * 89.17405 * 19 17 15 31 31 H 1.09005 * 110.33747 * 121.69770 * 20 19 17 32 32 H 1.08996 * 110.33973 * 243.84261 * 20 19 17 33 33 H 1.09003 * 111.13301 * 279.27992 * 22 17 15 34 34 H 1.08993 * 111.13388 * 43.45840 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 16 5.8354 -2.6368 -0.0001 12 8 6.3340 -2.1464 -1.2370 13 8 6.3341 -2.1466 1.2369 14 7 6.2485 -4.2405 0.0004 15 6 5.9389 -5.0164 -1.0571 16 8 5.3573 -4.5404 -2.0090 17 6 6.3144 -6.4760 -1.0563 18 1 7.3950 -6.5754 -0.9540 19 6 5.8612 -7.1231 -2.3659 20 6 5.5176 -8.6118 -2.1980 21 16 5.7326 -8.9487 -0.4082 22 6 5.6113 -7.1937 0.1259 23 1 -0.4850 0.8401 -0.0004 24 1 3.8751 -0.6798 -0.8895 25 1 3.8745 -0.6810 0.8905 26 1 3.6577 -3.1507 0.8897 27 1 3.6584 -3.1504 -0.8902 28 1 6.7133 -4.6213 0.7618 29 1 4.9801 -6.5968 -2.7331 30 1 6.6591 -7.0260 -3.1021 31 1 4.4863 -8.7987 -2.4975 32 1 6.1994 -9.2266 -2.7856 33 1 6.1492 -7.0315 1.0600 34 1 4.5714 -6.8795 0.2139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776115176.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:06 Heat of formation + Delta-G solvation = -146.722192 kcal Electronic energy + Delta-G solvation = -19613.207227 eV Core-core repulsion = 16377.074975 eV Total energy + Delta-G solvation = -3236.132252 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.059 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.58122 -38.36801 -37.28488 -36.69891 -35.97706 -35.71381 -33.52993 -30.85655 -27.98596 -26.80955 -24.19014 -23.19876 -21.36669 -20.77696 -19.57575 -19.15476 -18.60769 -17.51775 -17.43423 -17.01216 -16.65125 -16.38242 -16.03488 -15.47943 -15.30517 -14.85499 -14.81433 -14.15478 -13.91643 -13.80353 -13.42045 -13.30713 -13.22746 -13.12517 -13.04817 -12.91772 -12.63991 -12.34260 -12.15811 -11.99371 -11.86481 -11.72122 -11.64429 -11.23565 -10.86158 -10.82059 -8.75148 -8.37990 -6.44493 -1.07106 0.77013 0.86042 1.27163 1.32246 1.33257 1.37580 1.43279 2.28541 2.48267 2.90820 2.95970 3.15911 3.34217 3.61287 3.73624 3.90547 3.97866 3.98875 4.07864 4.20686 4.47549 4.50295 4.63315 4.82903 4.95690 5.00245 5.03984 5.09215 5.44028 5.59188 6.14027 6.31612 6.61210 7.19831 8.77657 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.024108 B = 0.004128 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.168780 B = 6781.631912 C = 7318.022191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.014 3.986 3 Si 0.926 3.074 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.245 1.245 7 C -0.529 4.529 8 H 0.047 0.953 9 C -0.016 4.016 10 C -0.580 4.580 11 S 2.602 3.398 12 O -0.972 6.972 13 O -0.963 6.963 14 N -1.034 6.034 15 C 0.544 3.456 16 O -0.521 6.521 17 C -0.101 4.101 18 H 0.154 0.846 19 C -0.128 4.128 20 C -0.058 4.058 21 S -0.314 6.314 22 C -0.066 4.066 23 H 0.270 0.730 24 H 0.029 0.971 25 H 0.041 0.959 26 H 0.151 0.849 27 H 0.133 0.867 28 H 0.452 0.548 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.146 0.854 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.352 -17.619 -0.016 24.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.185 4.185 3 Si 0.748 3.252 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.168 1.168 7 C -0.568 4.568 8 H 0.066 0.934 9 C -0.055 4.055 10 C -0.713 4.713 11 S 2.700 3.300 12 O -0.962 6.962 13 O -0.953 6.953 14 N -0.801 5.801 15 C 0.330 3.670 16 O -0.394 6.394 17 C -0.126 4.126 18 H 0.172 0.828 19 C -0.167 4.167 20 C -0.206 4.206 21 S -0.087 6.087 22 C -0.214 4.214 23 H 0.079 0.921 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.169 0.831 27 H 0.151 0.849 28 H 0.293 0.707 29 H 0.096 0.904 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.138 0.862 33 H 0.164 0.836 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 16.594 -17.538 -0.097 24.145 hybrid contribution -0.866 1.382 -0.355 1.669 sum 15.728 -16.156 -0.452 22.552 Atomic orbital electron populations 1.70009 1.07952 1.28472 1.51467 1.25883 0.95656 1.03090 0.93834 0.86009 0.80098 0.79228 0.79821 1.18845 1.19720 1.16794 1.21126 0.90120 0.93902 1.51674 0.93431 1.19381 0.97362 0.90573 0.98158 1.30185 1.21420 1.06955 1.12699 1.05339 0.78273 0.73036 0.73355 1.93568 1.78418 1.77895 1.46273 1.93589 1.78990 1.77455 1.45302 1.54835 1.66482 1.30886 1.27942 1.21017 0.75743 0.90274 0.79972 1.90927 1.39262 1.75254 1.33958 1.22474 1.05782 0.87824 0.96500 0.82810 1.21939 1.04599 0.93614 0.96581 1.23982 1.06347 0.97787 0.92513 1.88102 1.96188 1.14200 1.10176 1.24483 1.05149 0.90963 1.00773 0.92053 0.95275 0.94030 0.83113 0.84905 0.70695 0.90430 0.88065 0.88607 0.86229 0.83580 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.87 13.96 21.45 0.30 -57.57 16 2 C 0.01 0.82 5.47 84.66 0.46 1.28 16 3 Si 0.93 43.58 27.47 68.60 1.88 45.46 16 4 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.24 -10.72 6.54 99.48 0.65 -10.07 16 7 C -0.53 -30.01 9.66 25.60 0.25 -29.76 16 8 H 0.05 2.89 7.99 -2.91 -0.02 2.87 16 9 C -0.02 -0.73 4.05 29.85 0.12 -0.61 16 10 C -0.58 -20.76 5.82 71.98 0.42 -20.34 16 11 S 2.60 80.15 5.11 -56.49 -0.29 79.86 16 12 O -0.97 -37.52 17.04 -120.73 -2.06 -39.58 16 13 O -0.96 -31.97 18.08 -127.65 -2.31 -34.28 16 14 N -1.03 -19.49 5.52 -173.53 -0.96 -20.45 16 15 C 0.54 11.17 6.87 87.66 0.60 11.77 16 16 O -0.52 -15.62 13.48 13.32 0.18 -15.44 16 17 C -0.10 -1.25 2.90 -10.82 -0.03 -1.28 16 18 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 19 C -0.13 -1.73 5.61 30.81 0.17 -1.56 16 20 C -0.06 -0.68 7.38 72.22 0.53 -0.15 16 21 S -0.31 -4.59 23.22 -56.49 -1.31 -5.90 16 22 C -0.07 -0.72 6.72 72.72 0.49 -0.23 16 23 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 24 H 0.03 1.35 7.57 -2.39 -0.02 1.34 16 25 H 0.04 1.86 7.20 -2.39 -0.02 1.84 16 26 H 0.15 4.56 8.14 -2.39 -0.02 4.54 16 27 H 0.13 4.84 7.19 -2.39 -0.02 4.82 16 28 H 0.45 4.20 8.74 -96.75 -0.85 3.36 16 29 H 0.08 1.41 6.86 -2.39 -0.02 1.40 16 30 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.15 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 1.21 8.10 -2.39 -0.02 1.20 16 Total: -1.00 -79.43 309.91 -1.32 -80.75 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 0.22 Total: 8.01 kcal Atomic # 6 Polarization: -43.89 SS G_CDS: 3.01 Total: -40.87 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -0.66 Total: -78.02 kcal Atomic # 8 Polarization: -85.11 SS G_CDS: -4.19 Total: -89.29 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.46 kcal Atomic # 16 Polarization: 75.56 SS G_CDS: -1.60 Total: 73.96 kcal Total: -79.43 -1.32 -80.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776115176.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.971 kcal (2) G-P(sol) polarization free energy of solvation -79.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds