Wall clock time and date at job start Tue Mar 31 2020 03:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00420 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00103 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.34775 * 119.99693 * 275.00198 * 12 2 1 14 14 O 1.21693 * 120.00197 * 359.97438 * 13 12 2 15 15 C 1.46636 * 119.99745 * 179.97438 * 13 12 2 16 16 C 1.36264 * 125.21377 * 179.71660 * 15 13 12 17 17 C 1.38455 * 113.38553 * 179.83480 * 16 15 13 18 18 C 1.48479 * 122.78430 * 180.23369 * 17 16 15 19 19 N 1.34041 * 126.67677 * 359.95285 * 18 17 16 20 20 N 1.28986 * 107.27099 * 179.83197 * 19 18 17 21 21 N 1.28731 * 108.94137 * 0.42853 * 20 19 18 22 22 H 0.97001 * 125.34001 * 179.74564 * 21 20 19 23 23 N 1.28874 * 109.31591 * 359.72758 * 21 20 19 24 24 C 1.35912 * 114.42733 * 0.45497 * 17 16 15 25 25 S 1.70577 * 110.79685 * 359.74672 * 24 17 16 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 30 30 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 31 31 H 1.08005 * 123.30511 * 359.97438 * 16 15 13 32 32 H 1.08006 * 124.60425 * 179.73191 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8580 1.1626 2.4117 15 6 2.6353 -0.7096 3.5545 16 6 2.8109 -0.1344 4.7773 17 6 3.2806 -1.0153 5.7366 18 6 3.5407 -0.6104 7.1413 19 7 3.3691 0.6104 7.6675 20 7 3.7031 0.5416 8.9115 21 7 4.0810 -0.6601 9.1769 22 1 4.3859 -0.9741 10.0425 23 7 3.9904 -1.3804 8.1121 24 6 3.4885 -2.2801 5.2847 25 16 3.0910 -2.4051 3.6306 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7089 1.1613 -3.4844 30 1 2.2491 -1.6318 1.1527 31 1 2.6018 0.9059 4.9788 32 1 3.8557 -3.0953 5.8905 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820218859.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:15 Heat of formation + Delta-G solvation = 116.707436 kcal Electronic energy + Delta-G solvation = -19726.401917 eV Core-core repulsion = 16430.834382 eV Total energy + Delta-G solvation = -3295.567535 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.63910 -39.16335 -37.72638 -34.82988 -34.42727 -33.18333 -32.43934 -30.13900 -28.56526 -26.08208 -25.27145 -24.51696 -23.69768 -21.35472 -20.09618 -19.61124 -18.92442 -18.24229 -17.33371 -16.43903 -16.05643 -15.32036 -14.98768 -14.42917 -14.26414 -14.17693 -13.23904 -13.07232 -13.00521 -12.88201 -12.43518 -12.30495 -11.73225 -11.55407 -11.32434 -11.13131 -11.08331 -11.04498 -10.94607 -10.75307 -10.35127 -10.24252 -9.32116 -9.08391 -8.89185 -8.58094 -8.53359 -7.98415 -6.13333 -4.23162 0.35873 0.87281 1.35391 1.50562 1.71903 2.04559 2.77434 3.25668 3.31040 3.31922 3.55247 3.76851 3.95346 4.10711 4.36773 4.84887 5.14964 5.19098 5.23533 5.31112 5.40619 5.83241 6.06468 6.14360 6.20124 6.81539 6.94465 7.12301 7.37229 7.51282 7.66289 7.88498 7.95676 8.12378 8.55691 8.73159 8.98993 9.43954 10.92668 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.038013 B = 0.003153 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.412227 B = 8877.877160 C = 9357.891072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.265 3.735 3 H 0.053 0.947 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.701 5.701 13 C 0.573 3.427 14 O -0.535 6.535 15 C -0.245 4.245 16 C -0.041 4.041 17 C -0.046 4.046 18 C 0.247 3.753 19 N -0.263 5.263 20 N -0.050 5.050 21 N -0.231 5.231 22 H 0.474 0.526 23 N -0.299 5.299 24 C -0.211 4.211 25 S 0.255 5.745 26 H 0.092 0.908 27 H 0.016 0.984 28 H 0.027 0.973 29 H 0.266 0.734 30 H 0.386 0.614 31 H 0.164 0.836 32 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.073 -9.049 19.602 22.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.164 3.836 3 H 0.070 0.930 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.349 5.349 13 C 0.356 3.644 14 O -0.415 6.415 15 C -0.366 4.366 16 C -0.072 4.072 17 C -0.064 4.064 18 C -0.035 4.035 19 N -0.136 5.136 20 N -0.045 5.045 21 N -0.077 5.077 22 H 0.328 0.672 23 N -0.151 5.151 24 C -0.353 4.353 25 S 0.522 5.478 26 H 0.110 0.890 27 H 0.035 0.965 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.218 0.782 31 H 0.182 0.818 32 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.808 -8.820 18.854 21.610 hybrid contribution 0.643 -0.355 0.607 0.953 sum 6.452 -9.175 19.461 22.462 Atomic orbital electron populations 1.22096 0.98194 0.99287 1.01127 1.18826 0.91201 0.94082 0.79492 0.92965 1.21159 1.32729 1.13362 0.90246 0.92035 1.24878 0.94750 0.94935 0.99042 1.69892 1.35665 1.22325 1.24080 0.86492 0.79202 0.79580 0.81746 1.20114 1.21111 1.20127 1.46485 1.64772 1.13229 1.10370 1.16942 0.78909 0.86538 0.81979 1.90808 1.51293 1.14915 1.84466 1.24937 1.13832 0.98154 0.99705 1.20511 0.95911 1.01466 0.89362 1.16192 1.09016 0.93347 0.87808 1.23128 0.99072 0.86559 0.94748 1.76171 1.18046 1.20324 0.99049 1.78939 1.11665 1.03353 1.10570 1.47701 1.42290 1.05432 1.12230 0.67164 1.74899 1.22081 1.23814 0.94297 1.25692 1.06902 1.00780 1.01877 1.83154 1.56485 1.06424 1.01690 0.88952 0.96451 0.95342 0.92440 0.78167 0.81832 0.80590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.32 16 2 C 0.27 6.71 2.56 -69.08 -0.18 6.53 16 3 H 0.05 1.52 7.58 -51.93 -0.39 1.12 16 4 C -0.54 -14.04 8.73 -34.44 -0.30 -14.34 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.61 11.32 55.43 0.63 -23.99 16 8 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.70 -14.66 5.06 -56.25 -0.28 -14.94 16 13 C 0.57 11.75 7.75 -12.87 -0.10 11.65 16 14 O -0.54 -13.03 16.48 5.20 0.09 -12.95 16 15 C -0.25 -3.89 6.42 -36.91 -0.24 -4.13 16 16 C -0.04 -0.61 9.75 -40.21 -0.39 -1.00 16 17 C -0.05 -0.59 5.81 -106.43 -0.62 -1.20 16 18 C 0.25 3.11 8.03 -156.30 -1.25 1.86 16 19 N -0.26 -3.57 12.45 32.16 0.40 -3.17 16 20 N -0.05 -0.55 13.47 60.35 0.81 0.27 16 21 N -0.23 -1.78 7.90 60.35 0.48 -1.30 16 22 H 0.47 1.19 8.96 -340.37 -3.05 -1.87 16 23 N -0.30 -3.06 12.30 32.17 0.40 -2.66 16 24 C -0.21 -2.22 10.72 29.90 0.32 -1.90 16 25 S 0.25 2.89 22.11 -107.50 -2.38 0.51 16 26 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.39 6.94 7.63 -40.82 -0.31 6.63 16 31 H 0.16 2.58 8.05 -52.48 -0.42 2.16 16 32 H 0.18 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 304.96 15.07 4.60 4.60 Total: -1.00 -32.64 304.96 -8.10 -40.74 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.30 Total: 1.72 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -2.51 Total: -4.16 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 2.43 Total: -45.80 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.09 Total: -12.95 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.38 Total: 0.51 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.64 -8.10 -40.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820218859.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.449 kcal (2) G-P(sol) polarization free energy of solvation -32.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds