Wall clock time and date at job start Tue Mar 31 2020 03:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00420 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00103 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.34775 * 119.99693 * 275.00198 * 12 2 1 14 14 O 1.21693 * 120.00197 * 359.97438 * 13 12 2 15 15 C 1.46636 * 119.99745 * 179.97438 * 13 12 2 16 16 C 1.36264 * 125.21377 * 179.71660 * 15 13 12 17 17 C 1.38455 * 113.38553 * 179.83480 * 16 15 13 18 18 C 1.48479 * 122.78430 * 180.23369 * 17 16 15 19 19 N 1.34041 * 126.67677 * 359.95285 * 18 17 16 20 20 N 1.28986 * 107.27099 * 179.83197 * 19 18 17 21 21 N 1.28731 * 108.94137 * 0.42853 * 20 19 18 22 22 H 0.97001 * 125.34001 * 179.74564 * 21 20 19 23 23 N 1.28874 * 109.31591 * 359.72758 * 21 20 19 24 24 C 1.35912 * 114.42733 * 0.45497 * 17 16 15 25 25 S 1.70577 * 110.79685 * 359.74672 * 24 17 16 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 30 30 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 31 31 H 1.08005 * 123.30511 * 359.97438 * 16 15 13 32 32 H 1.08006 * 124.60425 * 179.73191 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8580 1.1626 2.4117 15 6 2.6353 -0.7096 3.5545 16 6 2.8109 -0.1344 4.7773 17 6 3.2806 -1.0153 5.7366 18 6 3.5407 -0.6104 7.1413 19 7 3.3691 0.6104 7.6675 20 7 3.7031 0.5416 8.9115 21 7 4.0810 -0.6601 9.1769 22 1 4.3859 -0.9741 10.0425 23 7 3.9904 -1.3804 8.1121 24 6 3.4885 -2.2801 5.2847 25 16 3.0910 -2.4051 3.6306 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7089 1.1613 -3.4844 30 1 2.2491 -1.6318 1.1527 31 1 2.6018 0.9059 4.9788 32 1 3.8557 -3.0953 5.8905 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820218859.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:15 Heat of formation + Delta-G solvation = 92.144467 kcal Electronic energy + Delta-G solvation = -19727.467047 eV Core-core repulsion = 16430.834382 eV Total energy + Delta-G solvation = -3296.632666 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.46632 -40.72565 -38.90935 -36.71581 -35.28110 -34.39494 -34.05517 -31.63846 -30.10455 -27.34247 -27.01874 -25.40777 -24.97966 -22.80669 -21.60477 -20.88693 -19.92985 -19.57422 -18.15178 -18.07572 -17.33052 -16.99148 -16.56022 -16.02740 -15.77935 -15.12152 -14.79451 -14.46763 -14.25300 -14.02025 -13.94261 -13.67354 -13.20635 -12.97823 -12.86013 -12.71773 -12.41300 -12.25762 -12.20131 -12.14196 -12.09281 -11.89930 -11.11946 -11.03709 -10.58209 -10.06792 -9.77952 -9.44432 -8.15615 -6.33748 -0.65133 0.01788 0.34815 0.47206 0.70565 1.44265 1.48212 1.50574 1.58253 1.72472 2.25184 2.29376 2.50973 2.77656 3.15065 3.19036 3.85790 4.03030 4.20217 4.31144 4.42499 4.73066 4.80187 4.93048 5.01057 5.07120 5.09738 5.42149 5.56461 5.62752 5.67184 5.88367 6.08948 6.71460 6.83724 7.11494 7.28365 7.43866 8.90781 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.038013 B = 0.003153 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.412227 B = 8877.877160 C = 9357.891072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.271 3.729 3 H 0.002 0.998 4 C -0.549 4.549 5 H 0.077 0.923 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.974 3.026 9 H -0.261 1.261 10 H -0.288 1.288 11 H -0.270 1.270 12 N -0.697 5.697 13 C 0.573 3.427 14 O -0.588 6.588 15 C -0.293 4.293 16 C -0.032 4.032 17 C -0.065 4.065 18 C 0.233 3.767 19 N -0.302 5.302 20 N -0.057 5.057 21 N -0.197 5.197 22 H 0.496 0.504 23 N -0.287 5.287 24 C -0.179 4.179 25 S 0.331 5.669 26 H 0.069 0.931 27 H 0.012 0.988 28 H 0.044 0.956 29 H 0.266 0.734 30 H 0.402 0.598 31 H 0.142 0.858 32 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.528 -12.618 20.756 25.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.168 3.832 3 H 0.020 0.980 4 C -0.587 4.587 5 H 0.095 0.905 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.186 1.186 10 H -0.213 1.213 11 H -0.195 1.195 12 N -0.346 5.346 13 C 0.359 3.641 14 O -0.471 6.471 15 C -0.414 4.414 16 C -0.066 4.066 17 C -0.082 4.082 18 C -0.049 4.049 19 N -0.174 5.174 20 N -0.052 5.052 21 N -0.049 5.049 22 H 0.355 0.645 23 N -0.140 5.140 24 C -0.320 4.320 25 S 0.599 5.401 26 H 0.088 0.912 27 H 0.031 0.969 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.237 0.763 31 H 0.160 0.840 32 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 7.282 -12.432 20.055 24.694 hybrid contribution 0.251 0.691 0.428 0.851 sum 7.533 -11.741 20.483 24.782 Atomic orbital electron populations 1.21926 0.98026 0.99761 0.99756 1.18436 0.91337 0.92066 0.81366 0.97993 1.21503 1.32895 1.13777 0.90572 0.90503 1.25813 0.94788 0.95549 1.02355 1.70051 1.36867 1.23876 1.24756 0.85370 0.78676 0.78775 0.77368 1.18593 1.21334 1.19503 1.46166 1.65039 1.13857 1.09518 1.17476 0.77630 0.86057 0.82896 1.90766 1.53430 1.17388 1.85501 1.24383 1.17449 1.01676 0.97852 1.20452 0.95206 1.01070 0.89838 1.16068 1.10498 0.93806 0.87833 1.23102 1.00015 0.86658 0.95079 1.76163 1.19649 1.21499 1.00133 1.78882 1.12140 1.04340 1.09829 1.47777 1.39977 1.04423 1.12705 0.64497 1.74842 1.21536 1.23405 0.94242 1.26151 1.03441 1.00591 1.01856 1.82861 1.54396 1.01400 1.01406 0.91187 0.96906 0.93730 0.92487 0.76265 0.84025 0.76964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.94 9.26 71.98 0.67 -6.27 16 2 C 0.27 14.17 2.56 44.25 0.11 14.29 16 3 H 0.00 0.13 7.58 -2.39 -0.02 0.12 16 4 C -0.55 -28.81 8.73 25.60 0.22 -28.59 16 5 H 0.08 3.70 7.74 -2.91 -0.02 3.68 16 6 C 0.02 0.81 5.30 84.65 0.45 1.26 16 7 N -0.92 -52.48 11.32 21.45 0.24 -52.24 16 8 Si 0.97 41.33 29.54 68.60 2.03 43.35 16 9 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 10 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 12 N -0.70 -29.62 5.06 -450.10 -2.28 -31.90 16 13 C 0.57 24.37 7.75 86.44 0.67 25.04 16 14 O -0.59 -30.59 16.48 -4.32 -0.07 -30.67 16 15 C -0.29 -9.27 6.42 24.00 0.15 -9.11 16 16 C -0.03 -0.97 9.75 21.86 0.21 -0.76 16 17 C -0.07 -1.56 5.81 -21.04 -0.12 -1.68 16 18 C 0.23 5.52 8.03 137.39 1.10 6.62 16 19 N -0.30 -8.09 12.45 -52.17 -0.65 -8.74 16 20 N -0.06 -1.17 13.47 37.02 0.50 -0.67 16 21 N -0.20 -2.55 7.90 37.02 0.29 -2.25 16 22 H 0.50 0.95 8.96 -347.53 -3.12 -2.17 16 23 N -0.29 -5.05 12.30 -52.12 -0.64 -5.69 16 24 C -0.18 -3.09 10.72 67.28 0.72 -2.36 16 25 S 0.33 6.49 22.11 -56.49 -1.25 5.24 16 26 H 0.07 3.89 6.07 -2.39 -0.01 3.88 16 27 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.04 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 30 H 0.40 14.10 7.63 -92.71 -0.71 13.40 16 31 H 0.14 4.82 8.05 -2.91 -0.02 4.80 16 32 H 0.21 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -74.44 304.96 -0.25 -74.70 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -2.61 Total: 10.45 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 4.19 Total: -1.58 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -2.54 Total: -101.50 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.07 Total: -30.67 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: 6.49 SS G_CDS: -1.25 Total: 5.24 kcal Total: -74.44 -0.25 -74.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820218859.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.840 kcal (2) G-P(sol) polarization free energy of solvation -74.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds