Wall clock time and date at job start Tue Mar 31 2020 02:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36882 * 126.40151 * 2 1 4 4 C 1.34660 * 106.82335 * 180.25264 * 3 2 1 5 5 N 1.34127 * 108.01775 * 359.73931 * 4 3 2 6 6 C 1.30500 * 109.26102 * 0.02562 * 5 4 3 7 7 C 1.50698 * 125.65341 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47066 * 90.02756 * 7 6 5 9 9 C 1.50698 * 109.47066 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00002 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99936 * 180.02562 * 9 8 7 12 12 C 1.47425 * 125.64662 * 359.96741 * 11 9 8 13 13 C 1.54912 * 104.83031 * 155.91189 * 12 11 9 14 14 C 1.55165 * 101.58248 * 37.00710 * 13 12 11 15 15 H 1.08999 * 110.71851 * 83.03672 * 14 13 12 16 16 N 1.46490 * 110.72000 * 206.13624 * 14 13 12 17 17 C 1.36935 * 120.00121 * 271.15446 * 16 14 13 18 18 H 1.07997 * 120.00139 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00401 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99569 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47055 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.46653 * 299.99639 * 21 19 17 24 24 H 1.48495 * 109.47483 * 60.00002 * 21 19 17 25 25 C 1.47316 * 125.61251 * 180.19889 * 11 9 8 26 26 H 1.08998 * 109.47324 * 270.19214 * 1 2 3 27 27 H 1.09004 * 109.46957 * 30.19335 * 1 2 3 28 28 H 1.08999 * 109.46779 * 150.19005 * 1 2 3 29 29 H 1.08002 * 126.58990 * 0.02562 * 3 2 1 30 30 H 1.07998 * 125.99674 * 179.76599 * 4 3 2 31 31 H 1.08997 * 109.46929 * 330.02522 * 7 6 5 32 32 H 1.08998 * 109.46924 * 210.02285 * 7 6 5 33 33 H 1.09004 * 109.47475 * 59.99375 * 8 7 6 34 34 H 1.08997 * 109.47017 * 300.00097 * 8 7 6 35 35 H 1.08990 * 110.36757 * 37.07375 * 12 11 9 36 36 H 1.09000 * 110.45945 * 274.79065 * 12 11 9 37 37 H 1.08997 * 111.00361 * 278.93988 * 13 12 11 38 38 H 1.08998 * 111.00614 * 155.08391 * 13 12 11 39 39 H 0.97000 * 120.00577 * 91.16046 * 16 14 13 40 40 H 0.97001 * 119.99885 * 359.97438 * 20 19 17 41 41 H 1.08997 * 110.06928 * 61.67433 * 25 11 9 42 42 H 1.09000 * 109.84708 * 300.41113 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 6 3.5460 0.6505 -0.0057 5 7 3.5095 -0.6903 -0.0033 6 6 2.2663 -1.0871 0.0032 7 6 1.8018 -2.5207 0.0072 8 6 1.6508 -3.0038 1.4510 9 6 1.1858 -4.4372 1.4550 10 8 0.9935 -5.0153 0.4063 11 7 0.9825 -5.0764 2.6240 12 6 1.1762 -4.4964 3.9655 13 6 0.2644 -5.3351 4.8956 14 6 0.4168 -6.7534 4.2849 15 1 1.3185 -7.2390 4.6580 16 7 -0.7654 -7.5701 4.5698 17 6 -0.8242 -8.3120 5.7193 18 1 0.0007 -8.2946 6.4160 19 6 -1.9443 -9.0864 5.9891 20 7 -2.9496 -9.1080 5.1397 21 14 -2.0248 -10.0978 7.5575 22 1 -3.3155 -10.8305 7.6082 23 1 -0.9029 -11.0706 7.5772 24 1 -1.9199 -9.1971 8.7334 25 6 0.5345 -6.4720 2.7720 26 1 -0.3634 0.0034 1.0276 27 1 -0.3633 0.8883 -0.5169 28 1 -0.3633 -0.8917 -0.5109 29 1 1.9613 2.1345 0.0004 30 1 4.4368 1.2610 -0.0108 31 1 2.5342 -3.1413 -0.5090 32 1 0.8410 -2.5927 -0.5023 33 1 0.9185 -2.3830 1.9672 34 1 2.6117 -2.9317 1.9606 35 1 0.8683 -3.4509 3.9747 36 1 2.2179 -4.5872 4.2731 37 1 -0.7695 -4.9948 4.8396 38 1 0.6269 -5.3112 5.9232 39 1 -1.5065 -7.5856 3.9442 40 1 -2.9078 -8.5824 4.3254 41 1 1.2632 -7.1481 2.3248 42 1 -0.4366 -6.6016 2.2943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969432013.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:53 Heat of formation + Delta-G solvation = 39.968500 kcal Electronic energy + Delta-G solvation = -22773.053895 eV Core-core repulsion = 19368.497939 eV Total energy + Delta-G solvation = -3404.555956 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.35436 -39.90904 -37.51312 -34.45429 -34.35771 -33.83385 -31.61972 -29.54174 -29.36478 -27.72719 -27.24173 -24.92654 -23.32407 -22.72548 -21.64461 -20.30598 -19.92577 -19.09293 -17.60176 -17.55559 -16.77444 -16.21942 -16.05342 -15.39385 -15.04550 -14.80172 -14.35824 -13.96834 -13.72664 -13.45409 -13.39876 -13.33302 -13.14724 -12.93873 -12.67925 -12.45713 -12.20000 -11.92675 -11.78511 -11.37352 -11.11627 -10.77149 -10.68854 -10.35956 -10.20910 -10.03118 -9.89637 -9.80897 -9.26740 -9.01258 -8.63802 -8.51036 -7.15860 -6.18483 -3.20579 1.73785 2.47123 2.67514 2.84384 3.10886 3.47829 3.50982 3.68658 4.11102 4.34516 4.46833 4.60177 4.64481 4.67887 4.80642 4.83464 4.93214 5.00271 5.11010 5.20258 5.24903 5.31681 5.36458 5.47929 5.54119 5.65628 5.68426 5.81432 5.84650 5.94522 6.00757 6.12416 6.25296 6.44058 6.48959 6.49542 6.77375 6.87393 7.62365 7.72145 7.86548 8.20830 8.66608 9.10883 9.97474 10.10839 11.29370 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037177 B = 0.002565 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.981391 B =10914.188055 C =10938.867649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.458 5.458 3 C -0.062 4.062 4 C -0.029 4.029 5 N -0.488 5.488 6 C 0.210 3.790 7 C -0.018 4.018 8 C -0.128 4.128 9 C 0.526 3.474 10 O -0.546 6.546 11 N -0.613 5.613 12 C 0.098 3.902 13 C -0.154 4.154 14 C 0.176 3.824 15 H 0.067 0.933 16 N -0.727 5.727 17 C -0.337 4.337 18 H 0.067 0.933 19 C -0.042 4.042 20 N -0.940 5.940 21 Si 1.081 2.919 22 H -0.285 1.285 23 H -0.294 1.294 24 H -0.294 1.294 25 C 0.100 3.900 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.173 0.827 30 H 0.169 0.831 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.369 0.631 40 H 0.256 0.744 41 H 0.067 0.933 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.555 21.208 -7.803 24.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.141 5.141 3 C -0.195 4.195 4 C -0.177 4.177 5 N -0.207 5.207 6 C -0.052 4.052 7 C -0.058 4.058 8 C -0.169 4.169 9 C 0.315 3.685 10 O -0.424 6.424 11 N -0.347 5.347 12 C -0.025 4.025 13 C -0.195 4.195 14 C 0.065 3.935 15 H 0.085 0.915 16 N -0.369 5.369 17 C -0.467 4.467 18 H 0.085 0.915 19 C -0.240 4.240 20 N -0.585 5.585 21 Si 0.911 3.089 22 H -0.210 1.210 23 H -0.221 1.221 24 H -0.222 1.222 25 C -0.023 4.023 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.191 0.809 30 H 0.187 0.813 31 H 0.122 0.878 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.203 0.797 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.193 19.327 -7.392 22.256 hybrid contribution 0.044 1.951 -0.912 2.154 sum 8.237 21.278 -8.304 24.281 Atomic orbital electron populations 1.22109 0.76564 1.04916 1.03927 1.45340 1.07657 1.06682 1.54447 1.22701 0.91419 0.92519 1.12855 1.22317 0.96432 0.91215 1.07720 1.70274 1.18476 1.12010 1.19905 1.23275 0.85790 0.90832 1.05352 1.19718 1.03176 0.86326 0.96556 1.21557 1.03779 0.93347 0.98195 1.20149 0.77663 0.88264 0.82447 1.90709 1.52464 1.68513 1.30738 1.48566 1.66237 1.14095 1.05775 1.22407 1.00178 0.97713 0.82200 1.23542 0.99336 0.98039 0.98587 1.21128 0.92185 0.90339 0.89886 0.91526 1.42371 1.16373 1.53509 1.24633 1.20016 1.04600 1.23633 0.98474 0.91514 1.25828 0.92810 1.00230 1.05126 1.70890 1.32300 1.43431 1.11869 0.83232 0.75831 0.75787 0.74018 1.20998 1.22145 1.22181 1.22369 1.00022 0.81120 0.98799 0.90256 0.89495 0.89137 0.80929 0.81330 0.87779 0.89584 0.89310 0.88156 0.91343 0.91392 0.90849 0.90416 0.79715 0.93303 0.91464 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.36 10.97 59.84 0.66 1.01 16 2 N -0.46 -4.04 3.15 -121.28 -0.38 -4.42 16 3 C -0.06 -0.52 11.58 -16.56 -0.19 -0.71 16 4 C -0.03 -0.29 11.87 -17.82 -0.21 -0.50 16 5 N -0.49 -6.28 11.25 -10.82 -0.12 -6.40 16 6 C 0.21 2.34 7.16 -155.41 -1.11 1.22 16 7 C -0.02 -0.20 4.81 -27.89 -0.13 -0.33 16 8 C -0.13 -1.36 4.69 -27.89 -0.13 -1.49 16 9 C 0.53 7.69 7.85 -10.98 -0.09 7.60 16 10 O -0.55 -9.85 16.31 5.56 0.09 -9.75 16 11 N -0.61 -9.14 3.33 -170.28 -0.57 -9.71 16 12 C 0.10 1.23 6.69 -2.53 -0.02 1.22 16 13 C -0.15 -2.44 6.77 -24.58 -0.17 -2.61 16 14 C 0.18 3.34 3.59 -66.09 -0.24 3.11 16 15 H 0.07 1.28 8.11 -51.93 -0.42 0.86 16 16 N -0.73 -17.53 5.23 -51.65 -0.27 -17.80 16 17 C -0.34 -9.11 9.97 -15.06 -0.15 -9.26 16 18 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 19 C -0.04 -1.19 5.50 -17.43 -0.10 -1.28 16 20 N -0.94 -28.57 13.70 55.49 0.76 -27.81 16 21 Si 1.08 25.25 29.92 -169.99 -5.09 20.16 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 25 C 0.10 1.75 6.64 -2.90 -0.02 1.73 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.45 7.04 -51.93 -0.37 0.09 16 29 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 30 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.10 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.09 0.86 7.01 -51.93 -0.36 0.49 16 33 H 0.09 0.80 7.85 -51.93 -0.41 0.39 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 0.71 7.48 -51.93 -0.39 0.32 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.37 9.29 6.37 -40.82 -0.26 9.03 16 40 H 0.26 7.66 6.77 -40.82 -0.28 7.38 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.07 1.30 7.70 -51.93 -0.40 0.90 16 LS Contribution 349.67 15.07 5.27 5.27 Total: -1.00 -34.87 349.67 -8.52 -43.39 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.31 Total: 7.35 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -1.90 Total: -0.29 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: -0.58 Total: -66.13 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.09 Total: 20.16 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.87 -8.52 -43.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969432013.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.361 kcal (2) G-P(sol) polarization free energy of solvation -34.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds