Wall clock time and date at job start Tue Mar 31 2020 02:50:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.36933 * 119.99942 * 2 1
4 4 H 1.07999 * 119.99852 * 201.71391 * 3 2 1
5 5 C 1.38808 * 120.00112 * 21.72399 * 3 2 1
6 6 N 1.31623 * 120.00217 * 13.63897 * 5 3 2
7 7 Si 1.86800 * 120.00106 * 193.64427 * 5 3 2
8 8 H 1.48494 * 109.47151 * 359.97438 * 7 5 3
9 9 H 1.48502 * 109.47338 * 120.00131 * 7 5 3
10 10 H 1.48504 * 109.47246 * 239.99873 * 7 5 3
11 11 C 1.46499 * 119.99808 * 180.02562 * 2 1 3
12 12 H 1.09001 * 110.88572 * 177.57229 * 11 2 1
13 13 C 1.55155 * 111.00709 * 301.45243 * 11 2 1
14 14 C 1.54323 * 102.94397 * 153.57666 * 13 11 2
15 15 N 1.47019 * 107.27194 * 337.81033 * 14 13 11
16 16 C 1.34782 * 125.65036 * 178.89748 * 15 14 13
17 17 O 1.21277 * 120.00178 * 180.02562 * 16 15 14
18 18 C 1.50700 * 119.99605 * 0.02562 * 16 15 14
19 19 C 1.53000 * 109.46715 * 180.02562 * 18 16 15
20 20 N 1.46498 * 109.46886 * 179.97438 * 19 18 16
21 21 C 1.34950 * 126.03983 * 124.71592 * 20 19 18
22 22 C 1.35312 * 107.74866 * 179.83656 * 21 20 19
23 23 C 1.39873 * 107.91914 * 0.42544 * 22 21 20
24 24 N 1.30835 * 108.20413 * 359.73747 * 23 22 21
25 25 C 1.47429 * 108.70407 * 358.93935 * 15 14 13
26 26 H 1.08998 * 109.47010 * 274.44808 * 1 2 3
27 27 H 1.08996 * 109.46834 * 34.44743 * 1 2 3
28 28 H 1.08999 * 109.46906 * 154.44520 * 1 2 3
29 29 H 0.97000 * 120.00147 * 179.97438 * 6 5 3
30 30 H 1.08998 * 110.71977 * 271.93911 * 13 11 2
31 31 H 1.08999 * 110.71498 * 35.21424 * 13 11 2
32 32 H 1.09001 * 109.88156 * 97.22531 * 14 13 11
33 33 H 1.08994 * 109.88215 * 218.23737 * 14 13 11
34 34 H 1.09005 * 109.47172 * 300.00077 * 18 16 15
35 35 H 1.08994 * 109.47484 * 60.00256 * 18 16 15
36 36 H 1.08996 * 109.47382 * 300.00052 * 19 18 16
37 37 H 1.09001 * 109.46984 * 60.00176 * 19 18 16
38 38 H 1.08004 * 126.11936 * 0.02562 * 21 20 19
39 39 H 1.08004 * 126.04363 * 180.16020 * 22 21 20
40 40 H 1.07998 * 125.89605 * 179.75385 * 23 22 21
41 41 H 1.09002 * 110.36723 * 265.29144 * 25 15 14
42 42 H 1.08992 * 110.36989 * 142.96892 * 25 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1722 1.2190 -0.3460
5 6 1.5296 2.3453 0.4449
6 7 0.3965 2.2718 1.1106
7 14 2.3031 4.0100 0.0989
8 1 3.5653 3.8212 -0.6602
9 1 1.3630 4.8362 -0.7005
10 1 2.5962 4.6962 1.3828
11 6 2.1975 -1.2687 -0.0006
12 1 3.2729 -1.0966 -0.0436
13 6 1.8210 -2.1289 1.2347
14 6 2.0895 -3.5686 0.7482
15 7 2.0419 -3.5489 -0.7211
16 6 2.2477 -4.6087 -1.5280
17 8 2.1839 -4.4758 -2.7318
18 6 2.5571 -5.9588 -0.9343
19 6 2.7457 -6.9791 -2.0587
20 7 3.0471 -8.2915 -1.4816
21 6 2.3703 -9.4356 -1.7144
22 6 2.9637 -10.4188 -0.9988
23 6 4.0342 -9.8544 -0.2973
24 7 4.0851 -8.5793 -0.5859
25 6 1.7328 -2.1777 -1.1658
26 1 -0.3633 0.0797 1.0246
27 1 -0.3633 0.8474 -0.5813
28 1 -0.3633 -0.9271 -0.4433
29 1 -0.0366 3.0820 1.4219
30 1 2.4585 -1.8836 2.0841
31 1 0.7695 -1.9978 1.4897
32 1 3.0741 -3.8954 1.0828
33 1 1.3242 -4.2401 1.1372
34 1 3.4715 -5.8954 -0.3444
35 1 1.7325 -6.2717 -0.2939
36 1 1.8316 -7.0426 -2.6489
37 1 3.5706 -6.6660 -2.6988
38 1 1.5109 -9.5470 -2.3590
39 1 2.6615 -11.4553 -0.9706
40 1 4.7033 -10.3805 0.3675
41 1 0.6613 -2.0648 -1.3308
42 1 2.2846 -1.9403 -2.0753
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000971101224.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:50:35
Heat of formation + Delta-G solvation = 75.978991 kcal
Electronic energy + Delta-G solvation = -22941.422580 eV
Core-core repulsion = 19538.428156 eV
Total energy + Delta-G solvation = -3402.994424 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-41.33643 -39.90983 -37.62874 -34.88108 -34.45018 -31.79521 -30.71156 -29.98492
-29.61976 -27.87349 -26.12659 -24.99259 -23.18242 -22.30702 -21.31247 -20.78133
-19.37371 -19.01103 -17.74503 -17.12008 -16.52060 -16.22864 -15.83223 -15.08651
-14.75772 -14.47993 -14.36785 -13.67497 -13.54561 -13.40916 -13.20560 -12.99170
-12.69154 -12.58598 -12.45055 -12.28856 -11.95020 -11.61244 -11.39318 -11.00642
-10.84331 -10.81941 -10.55805 -10.49527 -10.26495 -9.96155 -9.91881 -9.82070
-9.63333 -8.82574 -8.63695 -8.43893 -6.87070 -5.80778 -3.26851 1.68074
2.23251 2.63737 2.65024 3.13391 3.34165 3.42132 3.44084 4.26087
4.42836 4.46804 4.59304 4.67644 4.83687 4.97637 5.07110 5.20188
5.25692 5.31504 5.46022 5.48221 5.53041 5.55556 5.60935 5.70451
5.78392 5.85785 5.96471 6.21396 6.32807 6.42641 6.45796 6.57871
6.73585 6.77100 6.82347 7.30278 7.48984 7.63714 7.66829 7.74639
8.18172 8.30391 9.14336 9.76669 10.24426 11.24217
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.042965 B = 0.002637 C = 0.002615
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 651.537858 B =10613.630536 C =10704.215427
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.159 3.841
2 N -0.586 5.586
3 C -0.259 4.259
4 H 0.071 0.929
5 C 0.004 3.996
6 N -0.905 5.905
7 Si 0.907 3.093
8 H -0.278 1.278
9 H -0.289 1.289
10 H -0.290 1.290
11 C 0.173 3.827
12 H 0.078 0.922
13 C -0.152 4.152
14 C 0.101 3.899
15 N -0.609 5.609
16 C 0.530 3.470
17 O -0.551 6.551
18 C -0.147 4.147
19 C 0.150 3.850
20 N -0.371 5.371
21 C 0.055 3.945
22 C -0.279 4.279
23 C 0.042 3.958
24 N -0.296 5.296
25 C 0.084 3.916
26 H 0.032 0.968
27 H 0.045 0.955
28 H 0.002 0.998
29 H 0.253 0.747
30 H 0.077 0.923
31 H 0.076 0.924
32 H 0.065 0.935
33 H 0.061 0.939
34 H 0.107 0.893
35 H 0.096 0.904
36 H 0.105 0.895
37 H 0.095 0.905
38 H 0.173 0.827
39 H 0.146 0.854
40 H 0.182 0.818
41 H 0.071 0.929
42 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.401 -21.918 -1.709 22.116
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.014 3.986
2 N -0.306 5.306
3 C -0.389 4.389
4 H 0.089 0.911
5 C -0.195 4.195
6 N -0.550 5.550
7 Si 0.736 3.264
8 H -0.203 1.203
9 H -0.215 1.215
10 H -0.217 1.217
11 C 0.062 3.938
12 H 0.097 0.903
13 C -0.192 4.192
14 C -0.023 4.023
15 N -0.342 5.342
16 C 0.318 3.682
17 O -0.430 6.430
18 C -0.188 4.188
19 C 0.028 3.972
20 N -0.153 5.153
21 C -0.091 4.091
22 C -0.308 4.308
23 C -0.144 4.144
24 N -0.117 5.117
25 C -0.040 4.040
26 H 0.050 0.950
27 H 0.064 0.936
28 H 0.020 0.980
29 H 0.063 0.937
30 H 0.096 0.904
31 H 0.095 0.905
32 H 0.083 0.917
33 H 0.080 0.920
34 H 0.125 0.875
35 H 0.114 0.886
36 H 0.123 0.877
37 H 0.113 0.887
38 H 0.190 0.810
39 H 0.164 0.836
40 H 0.199 0.801
41 H 0.089 0.911
42 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 2.831 -20.468 -2.200 20.779
hybrid contribution -0.234 0.087 -0.048 0.254
sum 2.597 -20.380 -2.248 20.668
Atomic orbital electron populations
1.20838 0.82378 0.95806 0.99544 1.43837 1.01917 0.99863 1.84987
1.19271 0.97780 0.84978 1.36835 0.91115 1.25004 0.97792 0.98562
0.98139 1.70086 1.18858 1.27062 1.38986 0.86156 0.78594 0.84047
0.77555 1.20253 1.21541 1.21695 1.21407 0.96353 0.85824 0.90173
0.90347 1.23252 1.03030 0.92181 1.00784 1.22107 1.00878 0.99615
0.79682 1.48470 1.68679 1.09599 1.07498 1.19895 0.77105 0.84920
0.86322 1.90709 1.52829 1.85169 1.14307 1.21832 1.05223 0.92245
0.99476 1.21457 1.03629 0.77680 0.94387 1.48837 1.23031 1.08034
1.35447 1.22625 0.98899 0.86334 1.01273 1.21515 1.01906 1.00667
1.06761 1.23904 0.98697 0.91687 1.00126 1.77363 1.08280 1.16786
1.09300 1.23004 1.01240 0.79610 1.00112 0.94992 0.93590 0.97984
0.93691 0.90417 0.90514 0.91682 0.92027 0.87523 0.88563 0.87699
0.88711 0.80956 0.83633 0.80130 0.91082 0.90825
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.16 3.74 7.82 59.85 0.47 4.21 16
2 N -0.59 -14.01 2.96 -171.04 -0.51 -14.52 16
3 C -0.26 -6.89 9.63 -15.06 -0.15 -7.04 16
4 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16
5 C 0.00 0.10 5.08 -17.43 -0.09 0.01 16
6 N -0.91 -25.63 10.67 55.49 0.59 -25.04 16
7 Si 0.91 21.44 29.58 -169.99 -5.03 16.41 16
8 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
11 C 0.17 3.35 3.54 -65.78 -0.23 3.12 16
12 H 0.08 1.54 7.93 -51.93 -0.41 1.13 16
13 C -0.15 -2.47 6.54 -24.90 -0.16 -2.63 16
14 C 0.10 1.31 6.49 -3.07 -0.02 1.29 16
15 N -0.61 -9.24 3.33 -170.52 -0.57 -9.81 16
16 C 0.53 7.70 7.85 -10.98 -0.09 7.62 16
17 O -0.55 -9.72 16.24 5.56 0.09 -9.63 16
18 C -0.15 -1.59 5.08 -27.88 -0.14 -1.73 16
19 C 0.15 1.52 5.80 -4.04 -0.02 1.50 16
20 N -0.37 -3.91 3.68 -61.37 -0.23 -4.13 16
21 C 0.06 0.47 11.45 -17.22 -0.20 0.27 16
22 C -0.28 -2.32 10.80 -40.01 -0.43 -2.75 16
23 C 0.04 0.39 12.03 -17.36 -0.21 0.19 16
24 N -0.30 -3.50 12.42 30.62 0.38 -3.12 16
25 C 0.08 1.51 6.45 -2.53 -0.02 1.49 16
26 H 0.03 0.81 7.41 -51.93 -0.38 0.42 16
27 H 0.05 1.18 7.22 -51.93 -0.38 0.81 16
28 H 0.00 0.04 6.03 -51.93 -0.31 -0.28 16
29 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16
30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16
31 H 0.08 1.34 7.28 -51.93 -0.38 0.96 16
32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16
33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
34 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16
35 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16
36 H 0.10 0.93 8.03 -51.93 -0.42 0.51 16
37 H 0.09 1.04 8.10 -51.93 -0.42 0.61 16
38 H 0.17 0.91 8.06 -52.48 -0.42 0.49 16
39 H 0.15 0.87 8.06 -52.48 -0.42 0.45 16
40 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16
41 H 0.07 1.34 6.03 -51.93 -0.31 1.02 16
42 H 0.07 1.40 8.04 -51.93 -0.42 0.98 16
LS Contribution 345.84 15.07 5.21 5.21
Total: -1.00 -31.87 345.84 -7.70 -39.56
By element:
Atomic # 1 Polarization: 5.88 SS G_CDS: -6.36 Total: -0.47 kcal
Atomic # 6 Polarization: 6.82 SS G_CDS: -1.29 Total: 5.54 kcal
Atomic # 7 Polarization: -56.29 SS G_CDS: -0.33 Total: -56.62 kcal
Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal
Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal
Total LS contribution 5.21 Total: 5.21 kcal
Total: -31.87 -7.70 -39.56 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000971101224.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.543 kcal
(2) G-P(sol) polarization free energy of solvation -31.865 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.678 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.564 kcal
(6) G-S(sol) free energy of system = (1) + (5) 75.979 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds