Wall clock time and date at job start Tue Mar 31 2020 02:48:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.36941 * 120.00186 * 2 1
4 4 H 1.07991 * 120.00510 * 203.49171 * 3 2 1
5 5 C 1.38813 * 119.99589 * 23.48626 * 3 2 1
6 6 N 1.31626 * 120.00030 * 15.10712 * 5 3 2
7 7 Si 1.86804 * 119.99916 * 195.10338 * 5 3 2
8 8 H 1.48503 * 109.46864 * 90.00541 * 7 5 3
9 9 H 1.48503 * 109.46987 * 210.00026 * 7 5 3
10 10 H 1.48497 * 109.47126 * 329.99915 * 7 5 3
11 11 C 1.46500 * 120.00137 * 180.02562 * 2 1 3
12 12 H 1.09003 * 110.64073 * 178.30971 * 11 2 1
13 13 C 1.55154 * 110.71932 * 301.45047 * 11 2 1
14 14 C 1.54907 * 101.58151 * 154.04350 * 13 11 2
15 15 N 1.47418 * 104.83433 * 322.99105 * 14 13 11
16 16 C 1.34776 * 125.65164 * 204.09487 * 15 14 13
17 17 O 1.21278 * 120.00083 * 180.02562 * 16 15 14
18 18 C 1.50697 * 119.99863 * 0.02562 * 16 15 14
19 19 C 1.50697 * 109.47072 * 180.02562 * 18 16 15
20 20 C 1.34675 * 126.58998 * 84.98108 * 19 18 16
21 21 N 1.34127 * 108.02048 * 180.02562 * 20 19 18
22 22 C 1.30497 * 109.25740 * 359.97438 * 21 20 19
23 23 N 1.35043 * 108.70240 * 0.26927 * 22 21 20
24 24 C 1.46503 * 126.40010 * 179.73020 * 23 22 21
25 25 C 1.47021 * 108.70144 * 24.35566 * 15 14 13
26 26 H 1.09002 * 109.46843 * 275.21114 * 1 2 3
27 27 H 1.08993 * 109.47292 * 35.21173 * 1 2 3
28 28 H 1.08999 * 109.46705 * 155.21209 * 1 2 3
29 29 H 0.97001 * 119.99442 * 179.97438 * 6 5 3
30 30 H 1.09006 * 111.00721 * 35.96789 * 13 11 2
31 31 H 1.09005 * 111.03912 * 272.13049 * 13 11 2
32 32 H 1.09000 * 110.36576 * 204.15190 * 14 13 11
33 33 H 1.09002 * 110.46226 * 81.87673 * 14 13 11
34 34 H 1.09006 * 109.46899 * 60.00769 * 18 16 15
35 35 H 1.09001 * 109.47452 * 300.00533 * 18 16 15
36 36 H 1.07999 * 125.98858 * 0.03603 * 20 19 18
37 37 H 1.08008 * 125.65168 * 179.97438 * 22 21 20
38 38 H 1.09001 * 109.46486 * 90.02564 * 24 23 22
39 39 H 1.08995 * 109.46926 * 210.02403 * 24 23 22
40 40 H 1.08993 * 109.47230 * 330.02640 * 24 23 22
41 41 H 1.08996 * 109.88635 * 118.13009 * 25 15 14
42 42 H 1.09006 * 109.88674 * 239.29691 * 25 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1498 1.1859 0.0000
4 1 3.1626 1.2247 -0.3728
5 6 1.5419 2.3382 0.4791
6 7 0.4427 2.2523 1.1980
7 14 2.2840 4.0109 0.1037
8 1 1.7112 4.5336 -1.1628
9 1 1.9742 4.9499 1.2117
10 1 3.7565 3.8791 -0.0362
11 6 2.1976 -1.2687 -0.0006
12 1 3.2727 -1.0916 -0.0306
13 6 1.8163 -2.1232 1.2371
14 6 2.1054 -3.5568 0.7262
15 7 1.6994 -3.5415 -0.6909
16 6 1.3360 -4.6182 -1.4156
17 8 1.0201 -4.4875 -2.5792
18 6 1.3222 -5.9845 -0.7800
19 6 0.8834 -7.0069 -1.7964
20 6 1.6664 -7.6306 -2.6972
21 7 0.8944 -8.4616 -3.4132
22 6 -0.3371 -8.3769 -2.9899
23 7 -0.3887 -7.4760 -1.9852
24 6 -1.5824 -7.0775 -1.2352
25 6 1.7626 -2.1581 -1.1845
26 1 -0.3633 0.0933 1.0235
27 1 -0.3633 0.8396 -0.5925
28 1 -0.3633 -0.9330 -0.4309
29 1 0.0182 3.0576 1.5331
30 1 0.7619 -2.0023 1.4856
31 1 2.4475 -1.8782 2.0913
32 1 1.5141 -4.2842 1.2824
33 1 3.1675 -3.7856 0.8140
34 1 0.6288 -5.9869 0.0611
35 1 2.3233 -6.2308 -0.4262
36 1 2.7295 -7.4871 -2.8213
37 1 -1.1770 -8.9316 -3.3816
38 1 -1.7005 -7.7275 -0.3682
39 1 -1.4750 -6.0449 -0.9033
40 1 -2.4598 -7.1637 -1.8762
41 1 2.4909 -2.0855 -1.9922
42 1 0.7804 -1.8457 -1.5391
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000972733485.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:48:27
Heat of formation + Delta-G solvation = 61.855281 kcal
Electronic energy + Delta-G solvation = -23500.636581 eV
Core-core repulsion = 20097.029706 eV
Total energy + Delta-G solvation = -3403.606874 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-42.18470 -39.74351 -37.46723 -34.83275 -34.16520 -32.46098 -31.49589 -29.83234
-28.33115 -27.16984 -26.75988 -26.07723 -23.57268 -22.35387 -21.52932 -20.51817
-19.29178 -18.95939 -17.22395 -17.04591 -17.01819 -16.06417 -15.67695 -15.17942
-14.98049 -14.48020 -14.01126 -13.82728 -13.52630 -13.38385 -13.11443 -13.07738
-12.87211 -12.75340 -12.48212 -12.37097 -12.13819 -11.74901 -11.42659 -11.03478
-10.83742 -10.63675 -10.53206 -10.28347 -10.04108 -9.93681 -9.92963 -9.79835
-9.59639 -8.63244 -8.40871 -8.38428 -6.86277 -5.81581 -3.28946 1.88039
2.63851 2.75024 3.05065 3.29922 3.34628 3.41817 3.42321 4.40679
4.42613 4.49833 4.61766 4.65359 4.83544 4.85590 4.98074 5.08707
5.19159 5.23602 5.29985 5.35155 5.49264 5.51920 5.68653 5.72368
5.84960 5.95362 6.22487 6.25032 6.33916 6.50205 6.57702 6.66602
6.73451 6.82048 7.08319 7.26176 7.61976 7.71939 7.73852 8.00129
8.28505 8.32697 9.13289 9.76041 10.24843 11.23125
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.036077 B = 0.003080 C = 0.003052
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 775.941143 B = 9087.493652 C = 9171.549671
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.158 3.842
2 N -0.585 5.585
3 C -0.263 4.263
4 H 0.070 0.930
5 C 0.006 3.994
6 N -0.903 5.903
7 Si 0.906 3.094
8 H -0.287 1.287
9 H -0.291 1.291
10 H -0.278 1.278
11 C 0.173 3.827
12 H 0.079 0.921
13 C -0.150 4.150
14 C 0.098 3.902
15 N -0.613 5.613
16 C 0.522 3.478
17 O -0.535 6.535
18 C -0.060 4.060
19 C -0.004 4.004
20 C -0.010 4.010
21 N -0.495 5.495
22 C 0.180 3.820
23 N -0.455 5.455
24 C 0.071 3.929
25 C 0.087 3.913
26 H 0.034 0.966
27 H 0.040 0.960
28 H 0.002 0.998
29 H 0.253 0.747
30 H 0.074 0.926
31 H 0.079 0.921
32 H 0.067 0.933
33 H 0.068 0.932
34 H 0.096 0.904
35 H 0.115 0.885
36 H 0.167 0.833
37 H 0.204 0.796
38 H 0.077 0.923
39 H 0.084 0.916
40 H 0.089 0.911
41 H 0.061 0.939
42 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.713 -18.694 0.954 18.796
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.014 3.986
2 N -0.306 5.306
3 C -0.392 4.392
4 H 0.088 0.912
5 C -0.193 4.193
6 N -0.547 5.547
7 Si 0.736 3.264
8 H -0.214 1.214
9 H -0.217 1.217
10 H -0.204 1.204
11 C 0.062 3.938
12 H 0.097 0.903
13 C -0.191 4.191
14 C -0.026 4.026
15 N -0.347 5.347
16 C 0.309 3.691
17 O -0.412 6.412
18 C -0.101 4.101
19 C -0.119 4.119
20 C -0.158 4.158
21 N -0.212 5.212
22 C -0.102 4.102
23 N -0.138 5.138
24 C -0.072 4.072
25 C -0.037 4.037
26 H 0.052 0.948
27 H 0.058 0.942
28 H 0.021 0.979
29 H 0.063 0.937
30 H 0.093 0.907
31 H 0.097 0.903
32 H 0.085 0.915
33 H 0.086 0.914
34 H 0.115 0.885
35 H 0.133 0.867
36 H 0.184 0.816
37 H 0.220 0.780
38 H 0.096 0.904
39 H 0.103 0.897
40 H 0.108 0.892
41 H 0.079 0.921
42 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -1.891 -18.962 -0.203 19.057
hybrid contribution -0.128 1.541 0.624 1.668
sum -2.019 -17.421 0.421 17.543
Atomic orbital electron populations
1.20791 0.82609 0.95604 0.99594 1.43850 1.01783 0.99923 1.85000
1.19219 0.98900 0.85317 1.35745 0.91194 1.25020 0.98068 0.98611
0.97611 1.70076 1.21071 1.27456 1.36110 0.86237 0.78740 0.83922
0.77518 1.21409 1.21742 1.20377 1.21302 0.96405 0.85972 0.90103
0.90299 1.23381 1.02857 0.92484 1.00372 1.22404 0.99535 0.99478
0.81154 1.48524 1.66091 1.07715 1.12375 1.20080 0.77745 0.84956
0.86343 1.90737 1.48183 1.85737 1.16508 1.20005 1.04269 0.89700
0.96158 1.20458 0.84768 1.02756 1.03937 1.21963 0.99862 0.98455
0.95540 1.70249 1.01411 1.23069 1.26512 1.24856 0.97666 0.96437
0.91258 1.45201 1.07692 1.32429 1.28501 1.22041 0.85998 1.02215
0.96939 1.22744 1.02289 0.79683 0.98967 0.94784 0.94167 0.97948
0.93656 0.90683 0.90273 0.91461 0.91401 0.88530 0.86692 0.81616
0.77980 0.90433 0.89741 0.89249 0.92077 0.91041
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.16 3.75 7.70 59.85 0.46 4.21 16
2 N -0.59 -13.90 2.93 -171.38 -0.50 -14.40 16
3 C -0.26 -6.92 9.59 -15.06 -0.14 -7.07 16
4 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16
5 C 0.01 0.16 5.06 -17.43 -0.09 0.07 16
6 N -0.90 -25.45 10.86 55.49 0.60 -24.85 16
7 Si 0.91 21.30 29.58 -169.99 -5.03 16.28 16
8 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
11 C 0.17 3.26 3.42 -66.09 -0.23 3.04 16
12 H 0.08 1.48 7.93 -51.93 -0.41 1.07 16
13 C -0.15 -2.34 6.65 -24.59 -0.16 -2.51 16
14 C 0.10 1.16 6.69 -2.53 -0.02 1.15 16
15 N -0.61 -9.10 3.33 -170.52 -0.57 -9.67 16
16 C 0.52 7.81 7.84 -10.99 -0.09 7.73 16
17 O -0.53 -10.42 16.36 5.56 0.09 -10.33 16
18 C -0.06 -0.63 4.89 -29.04 -0.14 -0.78 16
19 C 0.00 -0.05 5.45 -81.60 -0.44 -0.50 16
20 C -0.01 -0.14 11.79 -17.81 -0.21 -0.35 16
21 N -0.49 -7.09 11.25 -14.66 -0.16 -7.26 16
22 C 0.18 2.03 12.56 -90.38 -1.14 0.90 16
23 N -0.46 -4.96 3.15 -121.36 -0.38 -5.34 16
24 C 0.07 0.50 10.82 59.85 0.65 1.14 16
25 C 0.09 1.56 6.41 -3.06 -0.02 1.54 16
26 H 0.03 0.86 7.32 -51.93 -0.38 0.48 16
27 H 0.04 1.03 7.43 -51.93 -0.39 0.65 16
28 H 0.00 0.04 6.30 -51.93 -0.33 -0.28 16
29 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16
30 H 0.07 1.28 7.28 -51.93 -0.38 0.91 16
31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16
32 H 0.07 0.63 7.48 -51.93 -0.39 0.24 16
33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16
34 H 0.10 0.80 7.36 -51.93 -0.38 0.42 16
35 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16
36 H 0.17 2.01 8.06 -52.49 -0.42 1.59 16
37 H 0.20 1.44 8.06 -52.48 -0.42 1.02 16
38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16
39 H 0.08 0.66 7.70 -51.93 -0.40 0.26 16
40 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16
41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
42 H 0.07 1.44 6.15 -51.93 -0.32 1.12 16
LS Contribution 343.74 15.07 5.18 5.18
Total: -1.00 -34.35 343.74 -8.64 -42.99
By element:
Atomic # 1 Polarization: 5.13 SS G_CDS: -6.30 Total: -1.18 kcal
Atomic # 6 Polarization: 10.15 SS G_CDS: -1.57 Total: 8.58 kcal
Atomic # 7 Polarization: -60.51 SS G_CDS: -1.01 Total: -61.52 kcal
Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal
Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.28 kcal
Total LS contribution 5.18 Total: 5.18 kcal
Total: -34.35 -8.64 -42.99 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000972733485.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.845 kcal
(2) G-P(sol) polarization free energy of solvation -34.347 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.498 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.989 kcal
(6) G-S(sol) free energy of system = (1) + (5) 61.855 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds