Wall clock time and date at job start Tue Mar 31 2020 02:48:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.36941 * 120.00186 * 2 1
4 4 H 1.07991 * 120.00510 * 203.49171 * 3 2 1
5 5 C 1.38813 * 119.99589 * 23.48626 * 3 2 1
6 6 N 1.31626 * 120.00030 * 15.10712 * 5 3 2
7 7 Si 1.86804 * 119.99916 * 195.10338 * 5 3 2
8 8 H 1.48503 * 109.46864 * 90.00541 * 7 5 3
9 9 H 1.48503 * 109.46987 * 210.00026 * 7 5 3
10 10 H 1.48497 * 109.47126 * 329.99915 * 7 5 3
11 11 C 1.46500 * 120.00137 * 180.02562 * 2 1 3
12 12 H 1.09003 * 110.64073 * 178.30971 * 11 2 1
13 13 C 1.55154 * 110.71932 * 301.45047 * 11 2 1
14 14 C 1.54907 * 101.58151 * 154.04350 * 13 11 2
15 15 N 1.47418 * 104.83433 * 322.99105 * 14 13 11
16 16 C 1.34776 * 125.65164 * 204.09487 * 15 14 13
17 17 O 1.21278 * 120.00083 * 180.02562 * 16 15 14
18 18 C 1.50697 * 119.99863 * 0.02562 * 16 15 14
19 19 C 1.50697 * 109.47072 * 180.02562 * 18 16 15
20 20 C 1.34675 * 126.58998 * 84.98108 * 19 18 16
21 21 N 1.34127 * 108.02048 * 180.02562 * 20 19 18
22 22 C 1.30497 * 109.25740 * 359.97438 * 21 20 19
23 23 N 1.35043 * 108.70240 * 0.26927 * 22 21 20
24 24 C 1.46503 * 126.40010 * 179.73020 * 23 22 21
25 25 C 1.47021 * 108.70144 * 24.35566 * 15 14 13
26 26 H 1.09002 * 109.46843 * 275.21114 * 1 2 3
27 27 H 1.08993 * 109.47292 * 35.21173 * 1 2 3
28 28 H 1.08999 * 109.46705 * 155.21209 * 1 2 3
29 29 H 0.97001 * 119.99442 * 179.97438 * 6 5 3
30 30 H 1.09006 * 111.00721 * 35.96789 * 13 11 2
31 31 H 1.09005 * 111.03912 * 272.13049 * 13 11 2
32 32 H 1.09000 * 110.36576 * 204.15190 * 14 13 11
33 33 H 1.09002 * 110.46226 * 81.87673 * 14 13 11
34 34 H 1.09006 * 109.46899 * 60.00769 * 18 16 15
35 35 H 1.09001 * 109.47452 * 300.00533 * 18 16 15
36 36 H 1.07999 * 125.98858 * 0.03603 * 20 19 18
37 37 H 1.08008 * 125.65168 * 179.97438 * 22 21 20
38 38 H 1.09001 * 109.46486 * 90.02564 * 24 23 22
39 39 H 1.08995 * 109.46926 * 210.02403 * 24 23 22
40 40 H 1.08993 * 109.47230 * 330.02640 * 24 23 22
41 41 H 1.08996 * 109.88635 * 118.13009 * 25 15 14
42 42 H 1.09006 * 109.88674 * 239.29691 * 25 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1498 1.1859 0.0000
4 1 3.1626 1.2247 -0.3728
5 6 1.5419 2.3382 0.4791
6 7 0.4427 2.2523 1.1980
7 14 2.2840 4.0109 0.1037
8 1 1.7112 4.5336 -1.1628
9 1 1.9742 4.9499 1.2117
10 1 3.7565 3.8791 -0.0362
11 6 2.1976 -1.2687 -0.0006
12 1 3.2727 -1.0916 -0.0306
13 6 1.8163 -2.1232 1.2371
14 6 2.1054 -3.5568 0.7262
15 7 1.6994 -3.5415 -0.6909
16 6 1.3360 -4.6182 -1.4156
17 8 1.0201 -4.4875 -2.5792
18 6 1.3222 -5.9845 -0.7800
19 6 0.8834 -7.0069 -1.7964
20 6 1.6664 -7.6306 -2.6972
21 7 0.8944 -8.4616 -3.4132
22 6 -0.3371 -8.3769 -2.9899
23 7 -0.3887 -7.4760 -1.9852
24 6 -1.5824 -7.0775 -1.2352
25 6 1.7626 -2.1581 -1.1845
26 1 -0.3633 0.0933 1.0235
27 1 -0.3633 0.8396 -0.5925
28 1 -0.3633 -0.9330 -0.4309
29 1 0.0182 3.0576 1.5331
30 1 0.7619 -2.0023 1.4856
31 1 2.4475 -1.8782 2.0913
32 1 1.5141 -4.2842 1.2824
33 1 3.1675 -3.7856 0.8140
34 1 0.6288 -5.9869 0.0611
35 1 2.3233 -6.2308 -0.4262
36 1 2.7295 -7.4871 -2.8213
37 1 -1.1770 -8.9316 -3.3816
38 1 -1.7005 -7.7275 -0.3682
39 1 -1.4750 -6.0449 -0.9033
40 1 -2.4598 -7.1637 -1.8762
41 1 2.4909 -2.0855 -1.9922
42 1 0.7804 -1.8457 -1.5391
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000972733485.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:48:27
Heat of formation + Delta-G solvation = 40.271699 kcal
Electronic energy + Delta-G solvation = -23501.572515 eV
Core-core repulsion = 20097.029706 eV
Total energy + Delta-G solvation = -3404.542809 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-43.03291 -40.98782 -38.88607 -36.52883 -34.95314 -33.69241 -32.98735 -31.26308
-29.63228 -28.11397 -27.88545 -27.71864 -25.13219 -23.78171 -22.38970 -21.51850
-20.79912 -20.01412 -18.94866 -18.22646 -17.93015 -17.50095 -16.61898 -16.58892
-16.17873 -15.78551 -15.27531 -15.11058 -14.80730 -14.64490 -14.45258 -14.21864
-13.92313 -13.76702 -13.57286 -13.35096 -13.24788 -13.01782 -12.92584 -12.86976
-12.57494 -12.37393 -12.25032 -12.05393 -11.82651 -11.46149 -11.04188 -10.93523
-10.65474 -10.45775 -9.63786 -9.31016 -8.81248 -7.85461 -5.34135 1.00479
1.46703 1.49259 1.56756 1.60561 1.90233 2.05188 2.27767 2.51057
3.27318 3.53031 3.57876 3.67691 3.86566 3.90345 3.94517 4.12198
4.13174 4.29806 4.37231 4.41192 4.42776 4.49576 4.56270 4.67693
4.69668 4.78016 4.84148 4.93333 5.02176 5.15935 5.27879 5.33541
5.39084 5.41777 5.63785 5.66196 5.78401 6.30398 6.32115 6.57786
7.11093 7.12778 7.15669 7.82652 8.27353 9.17740
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.036077 B = 0.003080 C = 0.003052
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 775.941143 B = 9087.493652 C = 9171.549671
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.180 3.820
2 N -0.602 5.602
3 C -0.268 4.268
4 H 0.073 0.927
5 C -0.047 4.047
6 N -0.933 5.933
7 Si 0.966 3.034
8 H -0.291 1.291
9 H -0.294 1.294
10 H -0.266 1.266
11 C 0.164 3.836
12 H 0.081 0.919
13 C -0.142 4.142
14 C 0.106 3.894
15 N -0.612 5.612
16 C 0.521 3.479
17 O -0.588 6.588
18 C -0.047 4.047
19 C -0.013 4.013
20 C -0.040 4.040
21 N -0.538 5.538
22 C 0.180 3.820
23 N -0.457 5.457
24 C 0.064 3.936
25 C 0.100 3.900
26 H 0.013 0.987
27 H 0.008 0.992
28 H 0.023 0.977
29 H 0.249 0.751
30 H 0.058 0.942
31 H 0.087 0.913
32 H 0.108 0.892
33 H 0.097 0.903
34 H 0.129 0.871
35 H 0.146 0.854
36 H 0.168 0.832
37 H 0.238 0.762
38 H 0.105 0.895
39 H 0.076 0.924
40 H 0.106 0.894
41 H 0.050 0.950
42 H 0.043 0.957
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.377 -20.567 2.289 20.740
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 N -0.324 5.324
3 C -0.398 4.398
4 H 0.091 0.909
5 C -0.243 4.243
6 N -0.579 5.579
7 Si 0.794 3.206
8 H -0.218 1.218
9 H -0.221 1.221
10 H -0.191 1.191
11 C 0.056 3.944
12 H 0.099 0.901
13 C -0.182 4.182
14 C -0.016 4.016
15 N -0.345 5.345
16 C 0.311 3.689
17 O -0.468 6.468
18 C -0.087 4.087
19 C -0.129 4.129
20 C -0.188 4.188
21 N -0.256 5.256
22 C -0.102 4.102
23 N -0.139 5.139
24 C -0.077 4.077
25 C -0.026 4.026
26 H 0.032 0.968
27 H 0.026 0.974
28 H 0.041 0.959
29 H 0.058 0.942
30 H 0.077 0.923
31 H 0.106 0.894
32 H 0.126 0.874
33 H 0.115 0.885
34 H 0.147 0.853
35 H 0.164 0.836
36 H 0.185 0.815
37 H 0.254 0.746
38 H 0.123 0.877
39 H 0.095 0.905
40 H 0.125 0.875
41 H 0.069 0.931
42 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges -1.532 -20.875 1.166 20.963
hybrid contribution -0.247 2.061 0.146 2.081
sum -1.778 -18.814 1.313 18.943
Atomic orbital electron populations
1.20439 0.83089 0.95213 0.97779 1.44009 1.01811 1.01131 1.85411
1.19545 0.99027 0.86608 1.34657 0.90935 1.25728 0.98795 1.01693
0.98073 1.70214 1.22427 1.27749 1.37489 0.85287 0.78573 0.80005
0.76690 1.21840 1.22060 1.19088 1.21487 0.96006 0.84709 0.92223
0.90106 1.23211 1.01918 0.94253 0.98842 1.22584 1.02103 0.97733
0.79147 1.48576 1.66012 1.06304 1.13641 1.20891 0.76127 0.86212
0.85703 1.90721 1.50438 1.86604 1.19050 1.20063 1.06922 0.85782
0.95977 1.20705 0.85311 1.02832 1.04074 1.22216 1.00523 0.99475
0.96545 1.70195 1.02981 1.24492 1.27960 1.25559 0.97761 0.96184
0.90744 1.45474 1.08232 1.31845 1.28375 1.22326 0.85070 1.02292
0.97983 1.22326 1.00234 0.81810 0.98225 0.96825 0.97355 0.95851
0.94221 0.92342 0.89425 0.87356 0.88487 0.85292 0.83595 0.81486
0.74579 0.87683 0.90511 0.87534 0.93136 0.93867
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.18 8.73 7.70 127.77 0.98 9.71 16
2 N -0.60 -28.90 2.93 -696.14 -2.04 -30.94 16
3 C -0.27 -14.27 9.59 84.03 0.81 -13.46 16
4 H 0.07 3.73 7.85 -2.92 -0.02 3.71 16
5 C -0.05 -2.57 5.06 84.86 0.43 -2.14 16
6 N -0.93 -53.75 10.86 21.65 0.24 -53.51 16
7 Si 0.97 44.23 29.58 68.60 2.03 46.26 16
8 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16
9 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16
10 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16
11 C 0.16 6.08 3.42 46.18 0.16 6.24 16
12 H 0.08 2.94 7.93 -2.39 -0.02 2.93 16
13 C -0.14 -4.10 6.65 31.98 0.21 -3.88 16
14 C 0.11 2.07 6.69 86.86 0.58 2.65 16
15 N -0.61 -16.71 3.33 -811.81 -2.70 -19.41 16
16 C 0.52 14.51 7.84 87.66 0.69 15.20 16
17 O -0.59 -22.73 16.36 -3.02 -0.05 -22.78 16
18 C -0.05 -0.82 4.89 29.10 0.14 -0.67 16
19 C -0.01 -0.30 5.45 40.95 0.22 -0.08 16
20 C -0.04 -1.07 11.79 83.53 0.98 -0.08 16
21 N -0.54 -15.13 11.25 -200.30 -2.25 -17.39 16
22 C 0.18 3.75 12.56 180.26 2.26 6.02 16
23 N -0.46 -8.87 3.15 -537.88 -1.70 -10.57 16
24 C 0.06 0.70 10.82 127.77 1.38 2.08 16
25 C 0.10 3.53 6.41 86.73 0.56 4.08 16
26 H 0.01 0.71 7.32 -2.39 -0.02 0.69 16
27 H 0.01 0.42 7.43 -2.39 -0.02 0.40 16
28 H 0.02 1.00 6.30 -2.39 -0.02 0.99 16
29 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16
30 H 0.06 1.90 7.28 -2.38 -0.02 1.88 16
31 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16
32 H 0.11 1.34 7.48 -2.39 -0.02 1.33 16
33 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16
34 H 0.13 1.44 7.36 -2.38 -0.02 1.42 16
35 H 0.15 1.67 8.14 -2.39 -0.02 1.65 16
36 H 0.17 4.07 8.06 -2.91 -0.02 4.05 16
37 H 0.24 2.77 8.06 -2.91 -0.02 2.75 16
38 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16
39 H 0.08 0.98 7.70 -2.39 -0.02 0.96 16
40 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16
41 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16
42 H 0.04 1.77 6.15 -2.38 -0.01 1.76 16
Total: -1.00 -78.29 343.74 3.94 -74.35
By element:
Atomic # 1 Polarization: 7.34 SS G_CDS: 1.01 Total: 8.35 kcal
Atomic # 6 Polarization: 16.23 SS G_CDS: 9.41 Total: 25.64 kcal
Atomic # 7 Polarization: -123.36 SS G_CDS: -8.46 Total: -131.81 kcal
Atomic # 8 Polarization: -22.73 SS G_CDS: -0.05 Total: -22.78 kcal
Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal
Total: -78.29 3.94 -74.35 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000972733485.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 114.620 kcal
(2) G-P(sol) polarization free energy of solvation -78.291 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.329 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.943 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.348 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.272 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds