Wall clock time and date at job start Tue Mar 31 2020 02:48:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.35044 * 126.39513 * 2 1
4 4 N 1.30494 * 108.70229 * 180.02562 * 3 2 1
5 5 C 1.34126 * 109.25549 * 0.02562 * 4 3 2
6 6 C 1.34666 * 108.02240 * 0.02562 * 5 4 3
7 7 C 1.50700 * 126.59444 * 179.97438 * 6 5 4
8 8 C 1.50695 * 109.47206 * 85.04357 * 7 6 5
9 9 O 1.21281 * 120.00053 * 359.97438 * 8 7 6
10 10 N 1.34780 * 120.00146 * 180.02562 * 8 7 6
11 11 C 1.46927 * 120.62989 * 359.71664 * 10 8 7
12 12 C 1.52766 * 109.00592 * 233.58586 * 11 10 8
13 13 C 1.53036 * 109.38230 * 305.58648 * 12 11 10
14 14 N 1.46504 * 109.44917 * 181.25682 * 13 12 11
15 15 C 1.36936 * 120.00080 * 84.93639 * 14 13 12
16 16 H 1.08003 * 119.99933 * 0.02562 * 15 14 13
17 17 C 1.38809 * 119.99833 * 180.02562 * 15 14 13
18 18 N 1.31621 * 120.00358 * 0.02562 * 17 15 14
19 19 Si 1.86802 * 119.99975 * 180.02562 * 17 15 14
20 20 H 1.48500 * 109.47150 * 89.99352 * 19 17 15
21 21 H 1.48499 * 109.47349 * 209.99904 * 19 17 15
22 22 H 1.48504 * 109.47109 * 329.99905 * 19 17 15
23 23 C 1.53041 * 109.53987 * 61.24394 * 13 12 11
24 24 C 1.46929 * 120.62895 * 179.97438 * 10 8 7
25 25 H 1.08999 * 109.47095 * 89.97693 * 1 2 3
26 26 H 1.08999 * 109.47008 * 209.97166 * 1 2 3
27 27 H 1.09001 * 109.47545 * 329.97576 * 1 2 3
28 28 H 1.08006 * 125.64918 * 359.75453 * 3 2 1
29 29 H 1.07998 * 125.99312 * 180.02562 * 5 4 3
30 30 H 1.09003 * 109.47444 * 205.04137 * 7 6 5
31 31 H 1.09001 * 109.47352 * 325.04130 * 7 6 5
32 32 H 1.08999 * 109.58196 * 353.41966 * 11 10 8
33 33 H 1.09000 * 109.58391 * 113.84855 * 11 10 8
34 34 H 1.09005 * 109.56059 * 185.55022 * 12 11 10
35 35 H 1.08996 * 109.38398 * 65.51820 * 12 11 10
36 36 H 1.09001 * 109.46500 * 301.21946 * 13 12 11
37 37 H 0.96996 * 119.99552 * 264.94708 * 14 13 12
38 38 H 0.96998 * 120.00289 * 180.02562 * 18 17 15
39 39 H 1.08996 * 109.49728 * 178.67872 * 23 13 12
40 40 H 1.09002 * 109.52253 * 58.59854 * 23 13 12
41 41 H 1.09002 * 109.58373 * 246.14968 * 24 10 8
42 42 H 1.08995 * 109.58877 * 6.44099 * 24 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2663 1.0870 0.0000
4 7 3.5095 0.6904 -0.0006
5 6 3.5461 -0.6503 -0.0015
6 6 2.2773 -1.1017 -0.0021
7 6 1.8365 -2.5428 -0.0037
8 6 1.8068 -3.0607 1.4111
9 8 2.1139 -2.3315 2.3303
10 7 1.4400 -4.3345 1.6550
11 6 1.0604 -5.2283 0.5524
12 6 -0.3149 -5.8248 0.8465
13 6 -0.2938 -6.4962 2.2216
14 7 -1.6032 -7.0948 2.4923
15 6 -1.8914 -8.3502 2.0277
16 1 -1.1532 -8.8993 1.4619
17 6 -3.1323 -8.9171 2.2838
18 7 -4.0322 -8.2478 2.9728
19 14 -3.5253 -10.6301 1.6505
20 1 -3.1319 -11.6366 2.6690
21 1 -4.9824 -10.7376 1.3851
22 1 -2.7737 -10.8777 0.3939
23 6 0.0218 -5.4528 3.2958
24 6 1.4068 -4.8539 3.0290
25 1 -0.3633 0.0004 -1.0277
26 1 -0.3633 -0.8902 0.5134
27 1 -0.3634 0.8897 0.5142
28 1 1.9333 2.1145 -0.0038
29 1 4.4369 -1.2609 -0.0017
30 1 0.8399 -2.6175 -0.4389
31 1 2.5356 -3.1360 -0.5932
32 1 1.0206 -4.6632 -0.3788
33 1 1.7925 -6.0310 0.4642
34 1 -0.5627 -6.5638 0.0845
35 1 -1.0622 -5.0314 0.8404
36 1 0.4704 -7.2734 2.2346
37 1 -2.2661 -6.6017 3.0006
38 1 -4.8992 -8.6441 3.1520
39 1 0.0135 -5.9271 4.2772
40 1 -0.7283 -4.6624 3.2674
41 1 2.1676 -5.6255 3.1464
42 1 1.5978 -4.0424 3.7312
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000997180749.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:48:22
Heat of formation + Delta-G solvation = 39.601083 kcal
Electronic energy + Delta-G solvation = -23400.449705 eV
Core-core repulsion = 19995.877816 eV
Total energy + Delta-G solvation = -3404.571889 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-42.22592 -40.00701 -37.42930 -34.54584 -34.19488 -32.73690 -31.88825 -30.76721
-29.33673 -27.33092 -27.08099 -24.81991 -23.06221 -22.68225 -21.56036 -20.84863
-19.93169 -18.80851 -17.37927 -17.15298 -17.06618 -15.89027 -15.61328 -15.46749
-14.88333 -14.45370 -14.03858 -13.89624 -13.78709 -13.56035 -13.40843 -13.29447
-13.13280 -12.97922 -12.76435 -12.48558 -12.12874 -11.96497 -11.63375 -11.03133
-10.93758 -10.88172 -10.55260 -10.29009 -10.06789 -9.91492 -9.86744 -9.73893
-9.63174 -8.97982 -8.55899 -8.44107 -7.05172 -5.84244 -3.13844 1.85250
2.58453 2.64361 2.98760 3.20707 3.37698 3.42912 3.44684 4.35696
4.48575 4.51066 4.54730 4.59218 4.80260 4.85439 5.00663 5.07136
5.18801 5.26395 5.27086 5.31545 5.34370 5.47120 5.57350 5.64998
5.66421 5.87915 5.94301 6.15644 6.19711 6.28703 6.31710 6.43474
6.53754 6.62956 6.81555 6.95451 7.05183 7.44412 7.61863 7.96912
8.18073 8.33909 9.45229 10.02275 10.36784 11.38240
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.032079 B = 0.003034 C = 0.002968
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 872.627798 B = 9227.579742 C = 9432.923176
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.070 3.930
2 N -0.454 5.454
3 C 0.180 3.820
4 N -0.495 5.495
5 C -0.011 4.011
6 C -0.005 4.005
7 C -0.065 4.065
8 C 0.513 3.487
9 O -0.537 6.537
10 N -0.606 5.606
11 C 0.106 3.894
12 C -0.152 4.152
13 C 0.179 3.821
14 N -0.724 5.724
15 C -0.241 4.241
16 H 0.071 0.929
17 C -0.013 4.013
18 N -0.932 5.932
19 Si 0.906 3.094
20 H -0.289 1.289
21 H -0.292 1.292
22 H -0.282 1.282
23 C -0.138 4.138
24 C 0.116 3.884
25 H 0.078 0.922
26 H 0.084 0.916
27 H 0.089 0.911
28 H 0.204 0.796
29 H 0.166 0.834
30 H 0.099 0.901
31 H 0.116 0.884
32 H 0.076 0.924
33 H 0.070 0.930
34 H 0.076 0.924
35 H 0.058 0.942
36 H 0.049 0.951
37 H 0.384 0.616
38 H 0.256 0.744
39 H 0.076 0.924
40 H 0.061 0.939
41 H 0.067 0.933
42 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.130 13.816 -7.882 18.857
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 N -0.137 5.137
3 C -0.102 4.102
4 N -0.213 5.213
5 C -0.159 4.159
6 C -0.119 4.119
7 C -0.106 4.106
8 C 0.300 3.700
9 O -0.414 6.414
10 N -0.340 5.340
11 C -0.017 4.017
12 C -0.193 4.193
13 C 0.069 3.931
14 N -0.365 5.365
15 C -0.372 4.372
16 H 0.089 0.911
17 C -0.209 4.209
18 N -0.580 5.580
19 Si 0.737 3.263
20 H -0.217 1.217
21 H -0.218 1.218
22 H -0.207 1.207
23 C -0.177 4.177
24 C -0.006 4.006
25 H 0.097 0.903
26 H 0.103 0.897
27 H 0.108 0.892
28 H 0.220 0.780
29 H 0.183 0.817
30 H 0.118 0.882
31 H 0.134 0.866
32 H 0.094 0.906
33 H 0.088 0.912
34 H 0.095 0.905
35 H 0.077 0.923
36 H 0.067 0.933
37 H 0.217 0.783
38 H 0.065 0.935
39 H 0.095 0.905
40 H 0.080 0.920
41 H 0.085 0.915
42 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges 10.790 14.533 -7.450 19.574
hybrid contribution -1.495 -1.408 -0.218 2.065
sum 9.295 13.125 -7.668 17.817
Atomic orbital electron populations
1.22056 0.76663 1.05062 1.03489 1.45209 1.07530 1.06661 1.54342
1.24859 0.85670 0.93290 1.06373 1.70249 1.19415 1.11937 1.19668
1.21950 0.95509 0.91090 1.07365 1.20458 0.91326 0.88460 1.11704
1.20074 1.04214 0.90421 0.95889 1.20421 0.77228 0.81453 0.90892
1.90715 1.48441 1.56200 1.46064 1.48183 1.66230 1.11046 1.08527
1.21812 0.98085 0.93311 0.88527 1.22605 0.94203 1.00530 1.01957
1.20160 0.89785 0.92531 0.90665 1.42438 1.11816 1.16969 1.65235
1.19226 0.97926 0.92099 1.27969 0.91140 1.24756 0.96628 0.98595
1.00910 1.69660 1.06381 1.37614 1.44380 0.86206 0.77289 0.84391
0.78377 1.21683 1.21789 1.20736 1.22210 0.95685 0.99207 1.00639
1.21623 0.97691 0.98813 0.82503 0.90339 0.89694 0.89233 0.77981
0.81656 0.88249 0.86582 0.90566 0.91219 0.90505 0.92339 0.93342
0.78284 0.93456 0.90539 0.91985 0.91504 0.89437
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.48 10.82 59.85 0.65 1.13 16
2 N -0.45 -4.77 3.15 -121.37 -0.38 -5.15 16
3 C 0.18 1.96 12.56 -90.38 -1.14 0.82 16
4 N -0.49 -6.82 11.25 -14.67 -0.17 -6.99 16
5 C -0.01 -0.14 11.79 -17.81 -0.21 -0.35 16
6 C 0.00 -0.05 5.45 -81.60 -0.44 -0.50 16
7 C -0.06 -0.64 4.23 -29.04 -0.12 -0.76 16
8 C 0.51 6.83 7.69 -10.99 -0.08 6.74 16
9 O -0.54 -9.26 15.45 5.56 0.09 -9.18 16
10 N -0.61 -7.76 2.98 -173.00 -0.52 -8.28 16
11 C 0.11 1.20 6.31 -3.93 -0.02 1.17 16
12 C -0.15 -2.31 5.64 -26.83 -0.15 -2.46 16
13 C 0.18 3.23 2.73 -67.89 -0.19 3.04 16
14 N -0.72 -17.14 5.12 -53.38 -0.27 -17.41 16
15 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16
16 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16
17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16
18 N -0.93 -27.39 13.06 55.49 0.72 -26.67 16
19 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16
20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16
22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16
23 C -0.14 -2.18 5.55 -26.59 -0.15 -2.33 16
24 C 0.12 1.60 6.44 -3.69 -0.02 1.57 16
25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
26 H 0.08 0.66 7.69 -51.93 -0.40 0.26 16
27 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16
28 H 0.20 1.38 8.06 -52.48 -0.42 0.95 16
29 H 0.17 1.88 8.06 -52.49 -0.42 1.45 16
30 H 0.10 0.81 7.18 -51.93 -0.37 0.44 16
31 H 0.12 0.87 7.95 -51.93 -0.41 0.46 16
32 H 0.08 0.66 5.93 -51.93 -0.31 0.35 16
33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16
35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
36 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16
37 H 0.38 9.82 7.80 -40.82 -0.32 9.50 16
38 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16
39 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16
40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
42 H 0.09 1.28 7.00 -51.93 -0.36 0.91 16
LS Contribution 345.56 15.07 5.21 5.21
Total: -1.00 -34.53 345.56 -8.84 -43.37
By element:
Atomic # 1 Polarization: 13.72 SS G_CDS: -6.37 Total: 7.36 kcal
Atomic # 6 Polarization: 3.26 SS G_CDS: -2.13 Total: 1.13 kcal
Atomic # 7 Polarization: -63.88 SS G_CDS: -0.61 Total: -64.49 kcal
Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.18 kcal
Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal
Total LS contribution 5.21 Total: 5.21 kcal
Total: -34.53 -8.84 -43.37 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000997180749.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.969 kcal
(2) G-P(sol) polarization free energy of solvation -34.530 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.439 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.601 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds