Wall clock time and date at job start Tue Mar 31 2020 02:48:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.35044 * 126.39513 * 2 1
4 4 N 1.30494 * 108.70229 * 180.02562 * 3 2 1
5 5 C 1.34126 * 109.25549 * 0.02562 * 4 3 2
6 6 C 1.34666 * 108.02240 * 0.02562 * 5 4 3
7 7 C 1.50700 * 126.59444 * 179.97438 * 6 5 4
8 8 C 1.50695 * 109.47206 * 85.04357 * 7 6 5
9 9 O 1.21281 * 120.00053 * 359.97438 * 8 7 6
10 10 N 1.34780 * 120.00146 * 180.02562 * 8 7 6
11 11 C 1.46927 * 120.62989 * 359.71664 * 10 8 7
12 12 C 1.52766 * 109.00592 * 233.58586 * 11 10 8
13 13 C 1.53036 * 109.38230 * 305.58648 * 12 11 10
14 14 N 1.46504 * 109.44917 * 181.25682 * 13 12 11
15 15 C 1.36936 * 120.00080 * 84.93639 * 14 13 12
16 16 H 1.08003 * 119.99933 * 0.02562 * 15 14 13
17 17 C 1.38809 * 119.99833 * 180.02562 * 15 14 13
18 18 N 1.31621 * 120.00358 * 0.02562 * 17 15 14
19 19 Si 1.86802 * 119.99975 * 180.02562 * 17 15 14
20 20 H 1.48500 * 109.47150 * 89.99352 * 19 17 15
21 21 H 1.48499 * 109.47349 * 209.99904 * 19 17 15
22 22 H 1.48504 * 109.47109 * 329.99905 * 19 17 15
23 23 C 1.53041 * 109.53987 * 61.24394 * 13 12 11
24 24 C 1.46929 * 120.62895 * 179.97438 * 10 8 7
25 25 H 1.08999 * 109.47095 * 89.97693 * 1 2 3
26 26 H 1.08999 * 109.47008 * 209.97166 * 1 2 3
27 27 H 1.09001 * 109.47545 * 329.97576 * 1 2 3
28 28 H 1.08006 * 125.64918 * 359.75453 * 3 2 1
29 29 H 1.07998 * 125.99312 * 180.02562 * 5 4 3
30 30 H 1.09003 * 109.47444 * 205.04137 * 7 6 5
31 31 H 1.09001 * 109.47352 * 325.04130 * 7 6 5
32 32 H 1.08999 * 109.58196 * 353.41966 * 11 10 8
33 33 H 1.09000 * 109.58391 * 113.84855 * 11 10 8
34 34 H 1.09005 * 109.56059 * 185.55022 * 12 11 10
35 35 H 1.08996 * 109.38398 * 65.51820 * 12 11 10
36 36 H 1.09001 * 109.46500 * 301.21946 * 13 12 11
37 37 H 0.96996 * 119.99552 * 264.94708 * 14 13 12
38 38 H 0.96998 * 120.00289 * 180.02562 * 18 17 15
39 39 H 1.08996 * 109.49728 * 178.67872 * 23 13 12
40 40 H 1.09002 * 109.52253 * 58.59854 * 23 13 12
41 41 H 1.09002 * 109.58373 * 246.14968 * 24 10 8
42 42 H 1.08995 * 109.58877 * 6.44099 * 24 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2663 1.0870 0.0000
4 7 3.5095 0.6904 -0.0006
5 6 3.5461 -0.6503 -0.0015
6 6 2.2773 -1.1017 -0.0021
7 6 1.8365 -2.5428 -0.0037
8 6 1.8068 -3.0607 1.4111
9 8 2.1139 -2.3315 2.3303
10 7 1.4400 -4.3345 1.6550
11 6 1.0604 -5.2283 0.5524
12 6 -0.3149 -5.8248 0.8465
13 6 -0.2938 -6.4962 2.2216
14 7 -1.6032 -7.0948 2.4923
15 6 -1.8914 -8.3502 2.0277
16 1 -1.1532 -8.8993 1.4619
17 6 -3.1323 -8.9171 2.2838
18 7 -4.0322 -8.2478 2.9728
19 14 -3.5253 -10.6301 1.6505
20 1 -3.1319 -11.6366 2.6690
21 1 -4.9824 -10.7376 1.3851
22 1 -2.7737 -10.8777 0.3939
23 6 0.0218 -5.4528 3.2958
24 6 1.4068 -4.8539 3.0290
25 1 -0.3633 0.0004 -1.0277
26 1 -0.3633 -0.8902 0.5134
27 1 -0.3634 0.8897 0.5142
28 1 1.9333 2.1145 -0.0038
29 1 4.4369 -1.2609 -0.0017
30 1 0.8399 -2.6175 -0.4389
31 1 2.5356 -3.1360 -0.5932
32 1 1.0206 -4.6632 -0.3788
33 1 1.7925 -6.0310 0.4642
34 1 -0.5627 -6.5638 0.0845
35 1 -1.0622 -5.0314 0.8404
36 1 0.4704 -7.2734 2.2346
37 1 -2.2661 -6.6017 3.0006
38 1 -4.8992 -8.6441 3.1520
39 1 0.0135 -5.9271 4.2772
40 1 -0.7283 -4.6624 3.2674
41 1 2.1676 -5.6255 3.1464
42 1 1.5978 -4.0424 3.7312
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000997180749.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:48:21
Heat of formation + Delta-G solvation = 17.520323 kcal
Electronic energy + Delta-G solvation = -23401.407199 eV
Core-core repulsion = 19995.877816 eV
Total energy + Delta-G solvation = -3405.529382 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-43.03602 -41.09640 -38.71750 -36.12708 -34.95871 -33.99971 -33.25318 -31.87666
-30.97304 -28.22298 -27.77615 -26.40614 -24.39008 -24.06683 -22.38388 -21.99515
-20.99254 -19.89960 -19.04182 -18.32624 -17.93147 -16.87698 -16.67807 -16.57972
-16.28633 -15.46762 -15.43616 -15.26221 -15.04374 -14.79044 -14.61707 -14.28265
-13.95288 -13.83189 -13.66773 -13.43986 -13.21344 -13.09902 -13.00772 -12.83720
-12.61343 -12.17054 -12.14576 -11.98218 -11.68938 -11.29901 -11.02069 -10.93019
-10.82369 -10.45077 -9.66592 -9.29354 -8.99501 -7.92482 -5.20985 1.02864
1.49409 1.50457 1.58477 1.60121 1.90621 2.07208 2.28481 2.57767
3.41148 3.54185 3.64122 3.82532 3.90353 3.94111 3.97077 4.09186
4.14375 4.21259 4.36920 4.40949 4.41081 4.43585 4.56803 4.66486
4.68613 4.81811 4.84025 4.85539 4.88266 5.04698 5.09505 5.31957
5.40073 5.51257 5.55921 5.64956 5.79408 6.29315 6.31285 6.43961
7.13321 7.16173 7.35490 8.11674 8.33990 9.31227
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.032079 B = 0.003034 C = 0.002968
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 872.627798 B = 9227.579742 C = 9432.923176
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.065 3.935
2 N -0.457 5.457
3 C 0.179 3.821
4 N -0.537 5.537
5 C -0.039 4.039
6 C -0.013 4.013
7 C -0.057 4.057
8 C 0.513 3.487
9 O -0.582 6.582
10 N -0.605 5.605
11 C 0.113 3.887
12 C -0.141 4.141
13 C 0.172 3.828
14 N -0.739 5.739
15 C -0.232 4.232
16 H 0.080 0.920
17 C -0.079 4.079
18 N -0.973 5.973
19 Si 0.969 3.031
20 H -0.291 1.291
21 H -0.300 1.300
22 H -0.265 1.265
23 C -0.127 4.127
24 C 0.123 3.877
25 H 0.101 0.899
26 H 0.076 0.924
27 H 0.107 0.893
28 H 0.237 0.763
29 H 0.170 0.830
30 H 0.123 0.877
31 H 0.146 0.854
32 H 0.115 0.885
33 H 0.088 0.912
34 H 0.068 0.932
35 H 0.047 0.953
36 H 0.049 0.951
37 H 0.369 0.631
38 H 0.249 0.751
39 H 0.067 0.933
40 H 0.049 0.951
41 H 0.083 0.917
42 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.896 13.857 -9.881 20.208
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 N -0.139 5.139
3 C -0.103 4.103
4 N -0.255 5.255
5 C -0.187 4.187
6 C -0.128 4.128
7 C -0.098 4.098
8 C 0.303 3.697
9 O -0.462 6.462
10 N -0.338 5.338
11 C -0.009 4.009
12 C -0.182 4.182
13 C 0.064 3.936
14 N -0.378 5.378
15 C -0.364 4.364
16 H 0.098 0.902
17 C -0.271 4.271
18 N -0.624 5.624
19 Si 0.799 3.201
20 H -0.218 1.218
21 H -0.227 1.227
22 H -0.190 1.190
23 C -0.166 4.166
24 C 0.000 4.000
25 H 0.120 0.880
26 H 0.095 0.905
27 H 0.126 0.874
28 H 0.253 0.747
29 H 0.187 0.813
30 H 0.141 0.859
31 H 0.164 0.836
32 H 0.133 0.867
33 H 0.106 0.894
34 H 0.087 0.913
35 H 0.066 0.934
36 H 0.067 0.933
37 H 0.201 0.799
38 H 0.058 0.942
39 H 0.086 0.914
40 H 0.067 0.933
41 H 0.101 0.899
42 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 11.599 14.568 -9.493 20.901
hybrid contribution -1.685 -1.349 0.441 2.203
sum 9.914 13.219 -9.052 18.840
Atomic orbital electron populations
1.22306 0.74627 1.05569 1.05168 1.45467 1.08810 1.06206 1.53448
1.25541 0.85151 0.94770 1.04876 1.70200 1.21313 1.12582 1.21424
1.22216 0.96576 0.91303 1.08563 1.20713 0.91222 0.89615 1.11291
1.20157 1.06356 0.89538 0.93725 1.21000 0.75970 0.80875 0.91898
1.90704 1.50420 1.57236 1.47798 1.48239 1.65902 1.11314 1.08357
1.21891 0.95725 0.94015 0.89289 1.22374 0.96650 0.99852 0.99335
1.20437 0.87131 0.93081 0.92988 1.42679 1.13480 1.16509 1.65167
1.19634 0.97684 0.92879 1.26236 0.90174 1.25538 0.97000 1.02280
1.02252 1.69820 1.06604 1.39265 1.46705 0.85193 0.76493 0.80145
0.78269 1.21833 1.22689 1.18981 1.22052 0.96776 0.98145 0.99598
1.21472 0.96408 0.98761 0.83360 0.88021 0.90548 0.87450 0.74705
0.81298 0.85874 0.83586 0.86744 0.89396 0.91299 0.93376 0.93302
0.79929 0.94234 0.91389 0.93256 0.89905 0.90392
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.72 10.82 127.77 1.38 2.10 16
2 N -0.46 -8.64 3.15 -537.89 -1.70 -10.34 16
3 C 0.18 3.61 12.56 180.26 2.26 5.88 16
4 N -0.54 -14.50 11.25 -200.31 -2.25 -16.76 16
5 C -0.04 -0.99 11.79 83.52 0.98 0.00 16
6 C -0.01 -0.27 5.45 40.95 0.22 -0.05 16
7 C -0.06 -0.94 4.23 29.10 0.12 -0.82 16
8 C 0.51 12.53 7.69 87.65 0.67 13.21 16
9 O -0.58 -19.59 15.45 -3.03 -0.05 -19.64 16
10 N -0.61 -13.96 2.98 -819.64 -2.44 -16.40 16
11 C 0.11 2.13 6.31 86.22 0.54 2.68 16
12 C -0.14 -3.99 5.64 30.53 0.17 -3.82 16
13 C 0.17 6.02 2.73 45.02 0.12 6.15 16
14 N -0.74 -35.06 5.12 -322.81 -1.65 -36.72 16
15 C -0.23 -12.16 9.93 84.03 0.83 -11.32 16
16 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16
17 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16
18 N -0.97 -58.31 13.06 21.65 0.28 -58.02 16
19 Si 0.97 44.49 29.55 68.60 2.03 46.52 16
20 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16
21 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16
22 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16
23 C -0.13 -3.95 5.55 30.69 0.17 -3.78 16
24 C 0.12 3.22 6.44 86.38 0.56 3.77 16
25 H 0.10 0.67 8.14 -2.39 -0.02 0.66 16
26 H 0.08 1.01 7.69 -2.39 -0.02 0.99 16
27 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16
28 H 0.24 2.66 8.06 -2.91 -0.02 2.64 16
29 H 0.17 3.81 8.06 -2.91 -0.02 3.78 16
30 H 0.12 1.46 7.18 -2.39 -0.02 1.44 16
31 H 0.15 1.53 7.95 -2.39 -0.02 1.51 16
32 H 0.11 1.37 5.93 -2.39 -0.01 1.35 16
33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16
34 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16
35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16
36 H 0.05 1.72 8.08 -2.39 -0.02 1.70 16
37 H 0.37 19.35 7.80 -92.71 -0.72 18.63 16
38 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16
39 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16
40 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16
41 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16
42 H 0.08 2.24 7.00 -2.39 -0.02 2.22 16
Total: -1.00 -76.71 345.56 3.04 -73.67
By element:
Atomic # 1 Polarization: 27.28 SS G_CDS: 0.30 Total: 27.58 kcal
Atomic # 6 Polarization: 1.57 SS G_CDS: 8.52 Total: 10.09 kcal
Atomic # 7 Polarization: -130.47 SS G_CDS: -7.76 Total: -138.23 kcal
Atomic # 8 Polarization: -19.59 SS G_CDS: -0.05 Total: -19.64 kcal
Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal
Total: -76.71 3.04 -73.67 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000997180749.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 91.191 kcal
(2) G-P(sol) polarization free energy of solvation -76.709 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.483 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.671 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.520 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds