Wall clock time and date at job start Tue Mar 31 2020 02:49:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.34771 * 120.00494 * 2 1
4 4 O 1.21280 * 120.00608 * 180.02562 * 3 2 1
5 5 C 1.50707 * 119.99938 * 359.97438 * 3 2 1
6 6 N 1.46495 * 109.47450 * 179.97438 * 5 3 2
7 7 C 1.34948 * 126.03637 * 124.99853 * 6 5 3
8 8 C 1.35316 * 107.74626 * 179.97438 * 7 6 5
9 9 C 1.39874 * 107.92065 * 0.02562 * 8 7 6
10 10 N 1.30835 * 108.20270 * 359.73701 * 9 8 7
11 11 C 1.46506 * 119.99831 * 179.97438 * 2 1 3
12 12 C 1.53034 * 109.46014 * 60.06861 * 11 2 1
13 13 C 1.53192 * 109.31407 * 178.61221 * 12 11 2
14 14 N 1.46928 * 108.77285 * 54.63771 * 13 12 11
15 15 C 1.36936 * 120.63130 * 126.36878 * 14 13 12
16 16 H 1.08001 * 120.00057 * 331.85468 * 15 14 13
17 17 C 1.38814 * 119.99841 * 151.85598 * 15 14 13
18 18 N 1.31617 * 120.00344 * 343.07623 * 17 15 14
19 19 Si 1.86803 * 119.99765 * 163.07201 * 17 15 14
20 20 H 1.48504 * 109.47063 * 60.00321 * 19 17 15
21 21 H 1.48501 * 109.47166 * 180.02562 * 19 17 15
22 22 H 1.48501 * 109.47096 * 300.00244 * 19 17 15
23 23 C 1.46927 * 118.73831 * 306.39245 * 14 13 12
24 24 C 1.53038 * 109.45946 * 300.00078 * 11 2 1
25 25 H 1.08999 * 109.47009 * 90.00251 * 1 2 3
26 26 H 1.08997 * 109.47492 * 210.00256 * 1 2 3
27 27 H 1.09001 * 109.46802 * 330.00060 * 1 2 3
28 28 H 1.09003 * 109.46703 * 60.00470 * 5 3 2
29 29 H 1.08999 * 109.47231 * 300.00556 * 5 3 2
30 30 H 1.07998 * 126.12454 * 0.02562 * 7 6 5
31 31 H 1.08004 * 126.03878 * 179.97438 * 8 7 6
32 32 H 1.07997 * 125.89598 * 179.97438 * 9 8 7
33 33 H 1.09001 * 109.45885 * 180.02562 * 11 2 1
34 34 H 1.09001 * 109.50098 * 298.57068 * 12 11 2
35 35 H 1.09003 * 109.49863 * 58.66174 * 12 11 2
36 36 H 1.08996 * 109.58975 * 294.84797 * 13 12 11
37 37 H 1.09000 * 109.70484 * 174.49207 * 13 12 11
38 38 H 0.96996 * 120.00231 * 179.97438 * 18 17 15
39 39 H 1.09004 * 109.58269 * 293.82076 * 23 14 13
40 40 H 1.08999 * 109.70551 * 173.46937 * 23 14 13
41 41 H 1.09003 * 109.50041 * 301.33905 * 24 11 2
42 42 H 1.09001 * 109.49769 * 61.40165 * 24 11 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1671 0.0000
4 8 3.3517 1.1671 -0.0005
5 6 1.3855 2.4723 -0.0006
6 7 2.3375 3.5858 0.0002
7 6 2.3784 4.5959 -0.8937
8 6 3.3978 5.4145 -0.5447
9 6 4.0009 4.8862 0.6014
10 7 3.3628 3.7928 0.9320
11 6 2.1975 -1.2688 0.0006
12 6 1.8288 -2.0709 -1.2495
13 6 2.6225 -3.3811 -1.2632
14 7 2.3848 -4.0910 0.0011
15 6 1.9509 -5.3898 0.0010
16 1 1.3616 -5.7623 -0.8239
17 6 2.2684 -6.2277 1.0612
18 7 3.2395 -5.9034 1.8884
19 14 1.3173 -7.8155 1.3141
20 1 1.4693 -8.6797 0.1160
21 1 1.8462 -8.5247 2.5068
22 1 -0.1199 -7.5041 1.5208
23 6 2.6211 -3.3808 1.2654
24 6 1.8275 -2.0705 1.2506
25 1 -0.3633 0.0000 -1.0277
26 1 -0.3634 -0.8899 0.5138
27 1 -0.3633 0.8900 0.5138
28 1 0.7586 2.5303 0.8892
29 1 0.7591 2.5299 -0.8908
30 1 1.7156 4.7278 -1.7362
31 1 3.6939 6.3160 -1.0606
32 1 4.8449 5.3099 1.1253
33 1 3.2691 -1.0694 0.0009
34 1 0.7616 -2.2920 -1.2384
35 1 2.0710 -1.4896 -2.1393
36 1 3.6855 -3.1634 -1.3657
37 1 2.2943 -4.0009 -2.0976
38 1 3.4611 -6.4887 2.6294
39 1 3.6841 -3.1630 1.3690
40 1 2.2915 -3.9982 2.1010
41 1 2.0687 -1.4890 2.1404
42 1 0.7601 -2.2912 1.2385
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001005111273.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:49:14
Heat of formation + Delta-G solvation = 80.161415 kcal
Electronic energy + Delta-G solvation = -23662.616886 eV
Core-core repulsion = 20259.803825 eV
Total energy + Delta-G solvation = -3402.813061 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-41.27166 -39.85261 -37.45143 -35.17191 -33.53186 -32.40144 -30.36919 -30.11062
-29.67896 -27.59658 -26.94969 -24.91464 -22.40771 -22.21551 -21.19850 -21.05847
-19.39589 -18.88490 -17.52466 -17.13760 -16.65550 -15.92321 -15.75748 -14.88682
-14.57080 -14.32918 -13.88327 -13.73170 -13.62377 -13.28189 -13.21936 -13.03867
-12.85925 -12.68390 -12.45437 -12.34019 -12.18647 -11.50994 -11.14132 -10.85088
-10.73905 -10.66834 -10.37617 -10.26332 -10.12114 -9.98731 -9.75442 -9.63527
-9.32301 -8.67827 -8.57740 -8.36005 -6.70954 -5.80856 -3.24054 1.78799
2.28148 2.57614 2.82676 3.07354 3.36706 3.42670 3.43364 4.22526
4.43270 4.47393 4.64923 4.74040 4.96759 5.02467 5.26035 5.31219
5.39079 5.43469 5.48135 5.60017 5.62294 5.65600 5.83063 5.90118
6.04184 6.16670 6.29589 6.44382 6.51441 6.56040 6.59955 6.74114
6.77672 6.89453 6.93352 7.31060 7.44285 7.63633 7.65886 7.76929
8.19089 8.42584 9.18545 9.81704 10.38839 11.27869
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.038978 B = 0.003163 C = 0.003098
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 718.180178 B = 8850.891001 C = 9035.130223
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.071 3.929
2 N -0.607 5.607
3 C 0.496 3.504
4 O -0.512 6.512
5 C 0.117 3.883
6 N -0.362 5.362
7 C 0.049 3.951
8 C -0.273 4.273
9 C 0.037 3.963
10 N -0.264 5.264
11 C 0.146 3.854
12 C -0.136 4.136
13 C 0.147 3.853
14 N -0.592 5.592
15 C -0.256 4.256
16 H 0.065 0.935
17 C 0.003 3.997
18 N -0.902 5.902
19 Si 0.903 3.097
20 H -0.282 1.282
21 H -0.290 1.290
22 H -0.284 1.284
23 C 0.174 3.826
24 C -0.145 4.145
25 H 0.057 0.943
26 H 0.082 0.918
27 H 0.064 0.936
28 H 0.112 0.888
29 H 0.122 0.878
30 H 0.172 0.828
31 H 0.146 0.854
32 H 0.182 0.818
33 H 0.095 0.905
34 H 0.061 0.939
35 H 0.051 0.949
36 H 0.020 0.980
37 H 0.057 0.943
38 H 0.255 0.745
39 H 0.020 0.980
40 H 0.091 0.909
41 H 0.051 0.949
42 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.485 19.934 -5.150 21.907
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 N -0.341 5.341
3 C 0.281 3.719
4 O -0.386 6.386
5 C -0.009 4.009
6 N -0.145 5.145
7 C -0.096 4.096
8 C -0.302 4.302
9 C -0.151 4.151
10 N -0.084 5.084
11 C 0.045 3.955
12 C -0.176 4.176
13 C 0.020 3.980
14 N -0.315 5.315
15 C -0.385 4.385
16 H 0.083 0.917
17 C -0.196 4.196
18 N -0.546 5.546
19 Si 0.733 3.267
20 H -0.209 1.209
21 H -0.216 1.216
22 H -0.210 1.210
23 C 0.048 3.952
24 C -0.185 4.185
25 H 0.076 0.924
26 H 0.101 0.899
27 H 0.083 0.917
28 H 0.130 0.870
29 H 0.140 0.860
30 H 0.189 0.811
31 H 0.164 0.836
32 H 0.199 0.801
33 H 0.113 0.887
34 H 0.080 0.920
35 H 0.069 0.931
36 H 0.037 0.963
37 H 0.076 0.924
38 H 0.065 0.935
39 H 0.039 0.961
40 H 0.109 0.891
41 H 0.070 0.930
42 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -6.935 18.722 -4.184 20.399
hybrid contribution -0.577 -0.137 -0.477 0.761
sum -7.512 18.585 -4.661 20.581
Atomic orbital electron populations
1.21826 0.80035 1.03479 1.01846 1.48152 1.06901 1.06175 1.72884
1.20438 0.88519 0.85072 0.77870 1.90783 1.13312 1.86548 1.47994
1.21561 0.89792 0.83817 1.05710 1.48149 1.25726 1.18957 1.21670
1.22517 1.00929 0.90014 0.96140 1.21475 1.01420 1.04982 1.02342
1.23929 1.00311 0.93600 0.97214 1.77544 1.00242 1.17652 1.13002
1.21216 0.97288 0.80586 0.96426 1.22356 1.01386 0.98031 0.95873
1.20863 0.95822 0.90900 0.90382 1.44080 1.77780 1.10224 0.99385
1.19131 1.26110 0.86601 1.06673 0.91680 1.25068 0.96866 0.97696
0.99936 1.70018 1.28107 1.38365 1.18084 0.86364 0.79712 0.83256
0.77380 1.20860 1.21614 1.21049 1.20750 0.95346 0.88609 0.90523
1.22566 1.01559 0.99010 0.95397 0.92441 0.89907 0.91685 0.87029
0.86041 0.81078 0.83599 0.80141 0.88720 0.92050 0.93071 0.96253
0.92419 0.93481 0.96142 0.89115 0.93014 0.92355
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.68 9.33 59.85 0.56 1.24 16
2 N -0.61 -8.49 2.76 -173.89 -0.48 -8.97 16
3 C 0.50 7.38 7.70 -10.98 -0.08 7.29 16
4 O -0.51 -10.22 15.05 5.56 0.08 -10.13 16
5 C 0.12 1.18 5.54 -5.19 -0.03 1.16 16
6 N -0.36 -4.57 3.39 -62.55 -0.21 -4.78 16
7 C 0.05 0.49 11.45 -17.22 -0.20 0.29 16
8 C -0.27 -2.78 10.80 -40.01 -0.43 -3.21 16
9 C 0.04 0.45 12.03 -17.36 -0.21 0.24 16
10 N -0.26 -4.05 11.66 30.62 0.36 -3.69 16
11 C 0.15 2.58 2.48 -67.89 -0.17 2.41 16
12 C -0.14 -2.35 5.34 -26.61 -0.14 -2.49 16
13 C 0.15 3.10 6.52 -3.71 -0.02 3.07 16
14 N -0.59 -14.73 2.99 -172.32 -0.52 -15.24 16
15 C -0.26 -6.93 9.58 -15.06 -0.14 -7.07 16
16 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16
17 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16
18 N -0.90 -26.19 11.19 55.49 0.62 -25.57 16
19 Si 0.90 21.46 29.59 -169.99 -5.03 16.43 16
20 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16
21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16
23 C 0.17 4.17 5.30 -3.71 -0.02 4.15 16
24 C -0.15 -2.77 5.31 -26.61 -0.14 -2.91 16
25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
26 H 0.08 0.87 6.45 -51.93 -0.34 0.54 16
27 H 0.06 0.42 6.44 -51.93 -0.33 0.09 16
28 H 0.11 0.91 7.40 -51.93 -0.38 0.53 16
29 H 0.12 0.74 8.04 -51.93 -0.42 0.32 16
30 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16
31 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16
32 H 0.18 1.64 8.06 -52.49 -0.42 1.22 16
33 H 0.09 1.96 6.90 -51.93 -0.36 1.60 16
34 H 0.06 1.02 7.72 -51.93 -0.40 0.62 16
35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16
37 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16
38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16
39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
40 H 0.09 2.41 6.06 -51.93 -0.31 2.10 16
41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16
42 H 0.06 1.07 6.72 -51.93 -0.35 0.72 16
LS Contribution 339.01 15.07 5.11 5.11
Total: -1.00 -35.36 339.01 -7.42 -42.79
By element:
Atomic # 1 Polarization: 6.12 SS G_CDS: -6.24 Total: -0.11 kcal
Atomic # 6 Polarization: 5.29 SS G_CDS: -1.12 Total: 4.17 kcal
Atomic # 7 Polarization: -58.02 SS G_CDS: -0.23 Total: -58.25 kcal
Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.13 kcal
Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal
Total LS contribution 5.11 Total: 5.11 kcal
Total: -35.36 -7.42 -42.79 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001005111273.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 122.948 kcal
(2) G-P(sol) polarization free energy of solvation -35.363 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.585 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.786 kcal
(6) G-S(sol) free energy of system = (1) + (5) 80.161 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds