Wall clock time and date at job start Tue Mar 31 2020 02:49:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.34771 * 120.00494 * 2 1
4 4 O 1.21280 * 120.00608 * 180.02562 * 3 2 1
5 5 C 1.50707 * 119.99938 * 359.97438 * 3 2 1
6 6 N 1.46495 * 109.47450 * 179.97438 * 5 3 2
7 7 C 1.34948 * 126.03637 * 124.99853 * 6 5 3
8 8 C 1.35316 * 107.74626 * 179.97438 * 7 6 5
9 9 C 1.39874 * 107.92065 * 0.02562 * 8 7 6
10 10 N 1.30835 * 108.20270 * 359.73701 * 9 8 7
11 11 C 1.46506 * 119.99831 * 179.97438 * 2 1 3
12 12 C 1.53034 * 109.46014 * 60.06861 * 11 2 1
13 13 C 1.53192 * 109.31407 * 178.61221 * 12 11 2
14 14 N 1.46928 * 108.77285 * 54.63771 * 13 12 11
15 15 C 1.36936 * 120.63130 * 126.36878 * 14 13 12
16 16 H 1.08001 * 120.00057 * 331.85468 * 15 14 13
17 17 C 1.38814 * 119.99841 * 151.85598 * 15 14 13
18 18 N 1.31617 * 120.00344 * 343.07623 * 17 15 14
19 19 Si 1.86803 * 119.99765 * 163.07201 * 17 15 14
20 20 H 1.48504 * 109.47063 * 60.00321 * 19 17 15
21 21 H 1.48501 * 109.47166 * 180.02562 * 19 17 15
22 22 H 1.48501 * 109.47096 * 300.00244 * 19 17 15
23 23 C 1.46927 * 118.73831 * 306.39245 * 14 13 12
24 24 C 1.53038 * 109.45946 * 300.00078 * 11 2 1
25 25 H 1.08999 * 109.47009 * 90.00251 * 1 2 3
26 26 H 1.08997 * 109.47492 * 210.00256 * 1 2 3
27 27 H 1.09001 * 109.46802 * 330.00060 * 1 2 3
28 28 H 1.09003 * 109.46703 * 60.00470 * 5 3 2
29 29 H 1.08999 * 109.47231 * 300.00556 * 5 3 2
30 30 H 1.07998 * 126.12454 * 0.02562 * 7 6 5
31 31 H 1.08004 * 126.03878 * 179.97438 * 8 7 6
32 32 H 1.07997 * 125.89598 * 179.97438 * 9 8 7
33 33 H 1.09001 * 109.45885 * 180.02562 * 11 2 1
34 34 H 1.09001 * 109.50098 * 298.57068 * 12 11 2
35 35 H 1.09003 * 109.49863 * 58.66174 * 12 11 2
36 36 H 1.08996 * 109.58975 * 294.84797 * 13 12 11
37 37 H 1.09000 * 109.70484 * 174.49207 * 13 12 11
38 38 H 0.96996 * 120.00231 * 179.97438 * 18 17 15
39 39 H 1.09004 * 109.58269 * 293.82076 * 23 14 13
40 40 H 1.08999 * 109.70551 * 173.46937 * 23 14 13
41 41 H 1.09003 * 109.50041 * 301.33905 * 24 11 2
42 42 H 1.09001 * 109.49769 * 61.40165 * 24 11 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1671 0.0000
4 8 3.3517 1.1671 -0.0005
5 6 1.3855 2.4723 -0.0006
6 7 2.3375 3.5858 0.0002
7 6 2.3784 4.5959 -0.8937
8 6 3.3978 5.4145 -0.5447
9 6 4.0009 4.8862 0.6014
10 7 3.3628 3.7928 0.9320
11 6 2.1975 -1.2688 0.0006
12 6 1.8288 -2.0709 -1.2495
13 6 2.6225 -3.3811 -1.2632
14 7 2.3848 -4.0910 0.0011
15 6 1.9509 -5.3898 0.0010
16 1 1.3616 -5.7623 -0.8239
17 6 2.2684 -6.2277 1.0612
18 7 3.2395 -5.9034 1.8884
19 14 1.3173 -7.8155 1.3141
20 1 1.4693 -8.6797 0.1160
21 1 1.8462 -8.5247 2.5068
22 1 -0.1199 -7.5041 1.5208
23 6 2.6211 -3.3808 1.2654
24 6 1.8275 -2.0705 1.2506
25 1 -0.3633 0.0000 -1.0277
26 1 -0.3634 -0.8899 0.5138
27 1 -0.3633 0.8900 0.5138
28 1 0.7586 2.5303 0.8892
29 1 0.7591 2.5299 -0.8908
30 1 1.7156 4.7278 -1.7362
31 1 3.6939 6.3160 -1.0606
32 1 4.8449 5.3099 1.1253
33 1 3.2691 -1.0694 0.0009
34 1 0.7616 -2.2920 -1.2384
35 1 2.0710 -1.4896 -2.1393
36 1 3.6855 -3.1634 -1.3657
37 1 2.2943 -4.0009 -2.0976
38 1 3.4611 -6.4887 2.6294
39 1 3.6841 -3.1630 1.3690
40 1 2.2915 -3.9982 2.1010
41 1 2.0687 -1.4890 2.1404
42 1 0.7601 -2.2912 1.2385
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001005111273.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:49:13
Heat of formation + Delta-G solvation = 56.071782 kcal
Electronic energy + Delta-G solvation = -23663.661491 eV
Core-core repulsion = 20259.803825 eV
Total energy + Delta-G solvation = -3403.857666 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-42.10892 -41.02325 -39.01953 -36.60402 -34.65081 -33.95930 -32.01324 -31.45923
-30.91741 -28.58783 -27.93253 -26.66165 -23.98207 -23.87368 -22.19811 -21.91560
-20.83301 -20.13090 -18.79078 -18.43121 -17.91449 -17.15946 -16.79352 -16.68475
-15.76920 -15.47826 -15.42422 -15.14328 -14.85591 -14.62216 -14.29034 -14.27497
-14.09746 -13.89017 -13.61248 -13.27806 -13.19049 -13.04456 -13.00773 -12.59262
-12.55616 -12.10899 -12.03726 -11.93185 -11.51525 -11.50774 -11.36871 -11.06560
-10.58174 -10.28036 -9.62751 -9.47426 -8.74823 -7.89563 -5.36717 0.98844
1.47547 1.49605 1.51026 1.53838 1.57040 2.02111 2.05108 2.50475
3.26261 3.35251 3.61713 3.73672 3.86759 4.02115 4.06000 4.10027
4.25395 4.26798 4.32452 4.42682 4.61411 4.64822 4.72217 4.75700
4.80897 4.93986 4.97759 5.01255 5.02799 5.10941 5.18592 5.26265
5.41342 5.53570 5.60822 5.65631 5.76118 6.13679 6.35804 6.40556
6.83425 7.10749 7.11195 7.80728 8.34448 9.17624
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.038978 B = 0.003163 C = 0.003098
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 718.180178 B = 8850.891001 C = 9035.130223
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.062 3.938
2 N -0.604 5.604
3 C 0.489 3.511
4 O -0.575 6.575
5 C 0.121 3.879
6 N -0.376 5.376
7 C 0.056 3.944
8 C -0.285 4.285
9 C 0.024 3.976
10 N -0.330 5.330
11 C 0.156 3.844
12 C -0.117 4.117
13 C 0.142 3.858
14 N -0.608 5.608
15 C -0.264 4.264
16 H 0.074 0.926
17 C -0.053 4.053
18 N -0.939 5.939
19 Si 0.972 3.028
20 H -0.275 1.275
21 H -0.297 1.297
22 H -0.273 1.273
23 C 0.182 3.818
24 C -0.127 4.127
25 H 0.084 0.916
26 H 0.073 0.927
27 H 0.103 0.897
28 H 0.136 0.864
29 H 0.174 0.826
30 H 0.218 0.782
31 H 0.171 0.829
32 H 0.196 0.804
33 H 0.055 0.945
34 H 0.079 0.921
35 H 0.071 0.929
36 H 0.001 0.999
37 H 0.066 0.934
38 H 0.250 0.750
39 H -0.017 1.017
40 H 0.060 0.940
41 H 0.051 0.949
42 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.907 21.668 -7.053 25.263
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 N -0.336 5.336
3 C 0.277 3.723
4 O -0.453 6.453
5 C -0.003 4.003
6 N -0.159 5.159
7 C -0.089 4.089
8 C -0.314 4.314
9 C -0.162 4.162
10 N -0.151 5.151
11 C 0.052 3.948
12 C -0.157 4.157
13 C 0.016 3.984
14 N -0.331 5.331
15 C -0.394 4.394
16 H 0.091 0.909
17 C -0.248 4.248
18 N -0.585 5.585
19 Si 0.800 3.200
20 H -0.200 1.200
21 H -0.224 1.224
22 H -0.199 1.199
23 C 0.055 3.945
24 C -0.167 4.167
25 H 0.103 0.897
26 H 0.092 0.908
27 H 0.121 0.879
28 H 0.153 0.847
29 H 0.191 0.809
30 H 0.234 0.766
31 H 0.189 0.811
32 H 0.212 0.788
33 H 0.073 0.927
34 H 0.097 0.903
35 H 0.090 0.910
36 H 0.019 0.981
37 H 0.084 0.916
38 H 0.059 0.941
39 H 0.001 0.999
40 H 0.079 0.921
41 H 0.070 0.930
42 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -10.413 20.487 -6.114 23.781
hybrid contribution 0.540 -0.634 0.062 0.836
sum -9.872 19.852 -6.052 22.983
Atomic orbital electron populations
1.22205 0.76631 1.04988 1.04091 1.48089 1.08746 1.04501 1.72279
1.21366 0.88096 0.86622 0.76248 1.90765 1.16313 1.87494 1.50775
1.21849 0.88998 0.80203 1.09247 1.48371 1.25690 1.20004 1.21805
1.23304 1.00875 0.88555 0.96120 1.21888 1.01506 1.06110 1.01869
1.24398 1.00563 0.93135 0.98148 1.77455 1.02530 1.19523 1.15637
1.20731 0.95806 0.82502 0.95747 1.22118 1.01451 0.95741 0.96361
1.21022 0.95600 0.92791 0.89026 1.44333 1.77917 1.10191 1.00684
1.19537 1.25621 0.87524 1.06729 0.90864 1.25903 0.97789 1.01173
0.99948 1.70204 1.29973 1.39658 1.18702 0.85277 0.78562 0.79242
0.76966 1.20017 1.22385 1.19868 1.20488 0.93862 0.90477 0.89637
1.22273 1.01364 0.96486 0.96536 0.89743 0.90839 0.87868 0.84690
0.80908 0.76560 0.81110 0.78757 0.92679 0.90273 0.91002 0.98091
0.91580 0.94100 0.99878 0.92141 0.92994 0.90709
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.90 9.33 127.77 1.19 2.09 16
2 N -0.60 -15.47 2.76 -822.45 -2.27 -17.74 16
3 C 0.49 13.74 7.70 87.66 0.68 14.42 16
4 O -0.58 -23.42 15.05 -3.03 -0.05 -23.47 16
5 C 0.12 2.00 5.54 85.64 0.47 2.47 16
6 N -0.38 -8.60 3.39 -351.80 -1.19 -9.79 16
7 C 0.06 0.92 11.45 83.54 0.96 1.88 16
8 C -0.28 -5.19 10.80 21.99 0.24 -4.96 16
9 C 0.02 0.57 12.03 85.24 1.03 1.60 16
10 N -0.33 -10.11 11.66 -57.02 -0.66 -10.78 16
11 C 0.16 5.45 2.48 45.01 0.11 5.56 16
12 C -0.12 -3.83 5.34 30.67 0.16 -3.67 16
13 C 0.14 5.98 6.52 86.36 0.56 6.54 16
14 N -0.61 -30.89 2.99 -699.09 -2.09 -32.98 16
15 C -0.26 -14.43 9.58 84.03 0.81 -13.63 16
16 H 0.07 3.81 7.89 -2.91 -0.02 3.79 16
17 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16
18 N -0.94 -56.75 11.19 21.65 0.24 -56.51 16
19 Si 0.97 44.52 29.59 68.60 2.03 46.55 16
20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16
21 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16
22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16
23 C 0.18 9.15 5.30 86.36 0.46 9.60 16
24 C -0.13 -4.88 5.31 30.67 0.16 -4.72 16
25 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16
26 H 0.07 1.26 6.45 -2.39 -0.02 1.24 16
27 H 0.10 0.74 6.44 -2.39 -0.02 0.72 16
28 H 0.14 1.60 7.40 -2.39 -0.02 1.58 16
29 H 0.17 1.00 8.04 -2.39 -0.02 0.98 16
30 H 0.22 1.28 8.06 -2.91 -0.02 1.25 16
31 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16
32 H 0.20 3.60 8.06 -2.91 -0.02 3.58 16
33 H 0.05 2.39 6.90 -2.39 -0.02 2.37 16
34 H 0.08 2.36 7.72 -2.39 -0.02 2.34 16
35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16
36 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16
37 H 0.07 2.64 7.93 -2.39 -0.02 2.62 16
38 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16
39 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16
40 H 0.06 3.39 6.06 -2.39 -0.01 3.37 16
41 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16
42 H 0.07 2.64 6.72 -2.39 -0.02 2.63 16
Total: -1.00 -83.80 339.01 4.26 -79.54
By element:
Atomic # 1 Polarization: 9.54 SS G_CDS: 1.01 Total: 10.54 kcal
Atomic # 6 Polarization: 7.40 SS G_CDS: 7.24 Total: 14.64 kcal
Atomic # 7 Polarization: -121.83 SS G_CDS: -5.98 Total: -127.81 kcal
Atomic # 8 Polarization: -23.42 SS G_CDS: -0.05 Total: -23.47 kcal
Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal
Total: -83.80 4.26 -79.54 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001005111273.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 135.613 kcal
(2) G-P(sol) polarization free energy of solvation -83.797 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.816 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.541 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.072 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds