Wall clock time and date at job start Tue Mar 31 2020 02:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34497 * 126.47309 * 2 1 4 4 N 1.30852 * 109.16494 * 180.02562 * 3 2 1 5 5 C 1.33320 * 109.68660 * 359.72741 * 4 3 2 6 6 C 1.36661 * 107.78422 * 0.43714 * 5 4 3 7 7 C 1.46769 * 126.84660 * 179.83526 * 6 5 4 8 8 O 1.21683 * 120.00242 * 174.42486 * 7 6 5 9 9 N 1.34776 * 119.99755 * 354.70966 * 7 6 5 10 10 C 1.46498 * 120.00064 * 184.85622 * 9 7 6 11 11 C 1.52995 * 109.47364 * 179.97438 * 10 9 7 12 12 H 1.08996 * 110.43793 * 307.54156 * 11 10 9 13 13 C 1.54893 * 110.48472 * 70.22845 * 11 10 9 14 14 C 1.54885 * 102.74972 * 156.62189 * 13 11 10 15 15 C 1.54272 * 104.19353 * 322.05534 * 14 13 11 16 16 H 1.09006 * 110.06808 * 142.91843 * 15 14 13 17 17 N 1.46499 * 110.03230 * 264.32369 * 15 14 13 18 18 C 1.36932 * 120.00312 * 272.16947 * 17 15 14 19 19 H 1.08006 * 119.99947 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99992 * 180.02562 * 18 17 15 21 21 N 1.31621 * 119.99829 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 120.00135 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47218 * 89.99793 * 22 20 18 24 24 H 1.48500 * 109.47030 * 210.00012 * 22 20 18 25 25 H 1.48501 * 109.47236 * 329.99726 * 22 20 18 26 26 C 1.53871 * 106.60037 * 23.61239 * 15 14 13 27 27 H 1.09007 * 109.47111 * 274.13492 * 1 2 3 28 28 H 1.08994 * 109.47247 * 34.13871 * 1 2 3 29 29 H 1.09000 * 109.47040 * 154.14417 * 1 2 3 30 30 H 1.07999 * 125.41766 * 0.02562 * 3 2 1 31 31 H 1.08001 * 126.11033 * 180.31038 * 5 4 3 32 32 H 0.97002 * 120.00308 * 4.85227 * 9 7 6 33 33 H 1.08994 * 109.47200 * 300.00292 * 10 9 7 34 34 H 1.09007 * 109.46796 * 59.99647 * 10 9 7 35 35 H 1.09003 * 110.75503 * 274.93555 * 13 11 10 36 36 H 1.08994 * 110.75562 * 38.30483 * 13 11 10 37 37 H 1.09000 * 110.48549 * 203.37753 * 14 13 11 38 38 H 1.09001 * 110.60378 * 80.78802 * 14 13 11 39 39 H 0.96998 * 119.99488 * 92.16952 * 17 15 14 40 40 H 0.97004 * 120.00074 * 179.97438 * 21 20 18 41 41 H 1.08992 * 110.03145 * 240.71529 * 26 15 14 42 42 H 1.08996 * 110.03306 * 119.28297 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2645 1.0815 0.0000 4 7 3.5138 0.6922 -0.0006 5 6 3.5691 -0.6398 0.0050 6 6 2.2863 -1.1109 -0.0006 7 6 1.8649 -2.5168 -0.0009 8 8 0.6851 -2.7984 0.0961 9 7 2.7853 -3.4960 -0.1028 10 6 2.3592 -4.8936 -0.2103 11 6 3.5905 -5.7958 -0.3132 12 1 4.2480 -5.4528 -1.1120 13 6 4.3482 -5.8350 1.0372 14 6 5.1232 -7.1735 0.9556 15 6 4.1429 -8.1361 0.2539 16 1 4.6874 -8.8024 -0.4152 17 7 3.4073 -8.9179 1.2508 18 6 3.9274 -10.0957 1.7170 19 1 4.8797 -10.4485 1.3495 20 6 3.2301 -10.8368 2.6613 21 7 3.7298 -11.9691 3.1090 22 14 1.5827 -10.2269 3.2965 23 1 0.4937 -10.7590 2.4385 24 1 1.3866 -10.6945 4.6922 25 1 1.5583 -8.7425 3.2637 26 6 3.1684 -7.2601 -0.5528 27 1 -0.3634 0.0741 1.0250 28 1 -0.3633 0.8505 -0.5767 29 1 -0.3633 -0.9248 -0.4482 30 1 1.9288 2.1080 0.0004 31 1 4.4673 -1.2395 0.0107 32 1 3.7299 -3.2755 -0.1050 33 1 1.7814 -5.1661 0.6728 34 1 1.7426 -5.0179 -1.1005 35 1 5.0370 -4.9941 1.1183 36 1 3.6483 -5.8443 1.8727 37 1 5.3645 -7.5361 1.9548 38 1 6.0311 -7.0555 0.3640 39 1 2.5519 -8.6012 1.5806 40 1 3.2427 -12.4868 3.7691 41 1 2.1482 -7.4167 -0.2025 42 1 3.2406 -7.5007 -1.6134 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086747824.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:43 Heat of formation + Delta-G solvation = 30.791462 kcal Electronic energy + Delta-G solvation = -22894.376810 eV Core-core repulsion = 19489.422908 eV Total energy + Delta-G solvation = -3404.953902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.55065 -39.65956 -38.22119 -35.28556 -34.31508 -33.37026 -31.28251 -30.44644 -28.93694 -27.60806 -27.47636 -24.81082 -22.97153 -22.79465 -21.68938 -20.62192 -19.83196 -19.34651 -18.21275 -17.52948 -16.45576 -16.42323 -16.31211 -15.44007 -15.04284 -14.67665 -14.52846 -14.31774 -14.08489 -13.68112 -13.49349 -13.27322 -13.11489 -13.07231 -12.73296 -12.38089 -11.89026 -11.37962 -10.97485 -10.81275 -10.72898 -10.62940 -10.48620 -10.38833 -10.35807 -10.15504 -10.08274 -9.94541 -9.57822 -9.34298 -8.93983 -8.90140 -7.24601 -5.76575 -3.11540 0.97554 2.12250 2.49631 3.05065 3.06391 3.38315 3.41564 3.46349 4.15527 4.33287 4.42956 4.59777 4.69750 4.72296 4.79210 4.82560 4.95236 5.01222 5.16263 5.39204 5.46476 5.52717 5.61620 5.69853 5.73165 5.85394 5.94518 5.99751 6.05435 6.08485 6.20753 6.23996 6.29559 6.51321 6.63035 6.64236 6.79472 6.99513 7.20574 7.50960 7.90885 8.01498 8.43247 9.22251 9.95065 10.14864 11.41890 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026383 B = 0.003000 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.039201 B = 9331.934408 C = 9873.650214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.428 5.428 3 C 0.203 3.797 4 N -0.497 5.497 5 C 0.037 3.963 6 C -0.085 4.085 7 C 0.592 3.408 8 O -0.547 6.547 9 N -0.711 5.711 10 C 0.128 3.872 11 C -0.105 4.105 12 H 0.079 0.921 13 C -0.115 4.115 14 C -0.146 4.146 15 C 0.179 3.821 16 H 0.058 0.942 17 N -0.745 5.745 18 C -0.242 4.242 19 H 0.090 0.910 20 C 0.004 3.996 21 N -0.935 5.935 22 Si 0.883 3.117 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.277 1.277 26 C -0.123 4.123 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.213 0.787 31 H 0.179 0.821 32 H 0.403 0.597 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.360 0.640 40 H 0.259 0.741 41 H 0.069 0.931 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.443 26.234 -9.116 27.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.108 5.108 3 C -0.079 4.079 4 N -0.215 5.215 5 C -0.117 4.117 6 C -0.202 4.202 7 C 0.378 3.622 8 O -0.426 6.426 9 N -0.362 5.362 10 C 0.006 3.994 11 C -0.124 4.124 12 H 0.098 0.902 13 C -0.153 4.153 14 C -0.186 4.186 15 C 0.070 3.930 16 H 0.076 0.924 17 N -0.388 5.388 18 C -0.372 4.372 19 H 0.108 0.892 20 C -0.192 4.192 21 N -0.583 5.583 22 Si 0.713 3.287 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.162 4.162 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.124 0.876 30 H 0.229 0.771 31 H 0.196 0.804 32 H 0.238 0.762 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.193 0.807 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.697 26.296 -9.029 28.047 hybrid contribution -1.468 0.010 0.647 1.604 sum -5.165 26.305 -8.382 28.088 Atomic orbital electron populations 1.22317 0.75175 1.05860 1.04300 1.45281 1.08401 1.05799 1.51301 1.25161 0.85572 0.93665 1.03470 1.70158 1.19027 1.12135 1.20153 1.22666 0.95192 0.91369 1.02517 1.20836 0.91580 0.88974 1.18848 1.16778 0.85645 0.83152 0.76629 1.90800 1.17109 1.84009 1.50670 1.45670 1.09577 1.06708 1.74212 1.21584 0.97198 0.78196 1.02451 1.22269 0.95560 0.95553 0.99001 0.90223 1.22536 0.98684 0.98012 0.96076 1.23087 0.97990 0.95194 1.02357 1.20774 0.91208 0.91144 0.89922 0.92406 1.42910 1.22678 1.24423 1.48791 1.19095 1.04382 0.95494 1.18269 0.89210 1.24672 0.98335 0.96815 0.99384 1.69703 1.39262 1.15080 1.34222 0.86573 0.85424 0.78242 0.78430 1.21107 1.21807 1.20313 1.22488 1.00695 0.92523 1.00524 0.89981 0.89420 0.87610 0.77094 0.80398 0.76195 0.90855 0.91331 0.92563 0.91512 0.90683 0.92792 0.80684 0.93097 0.91257 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 10.75 59.85 0.64 1.06 16 2 N -0.43 -3.80 3.17 -121.97 -0.39 -4.19 16 3 C 0.20 1.62 12.52 -90.58 -1.13 0.49 16 4 N -0.50 -5.18 11.20 -14.43 -0.16 -5.35 16 5 C 0.04 0.36 11.37 -17.48 -0.20 0.16 16 6 C -0.09 -0.90 6.91 -82.14 -0.57 -1.47 16 7 C 0.59 7.09 7.78 -12.81 -0.10 6.99 16 8 O -0.55 -8.17 14.87 5.20 0.08 -8.09 16 9 N -0.71 -7.17 5.43 -61.59 -0.33 -7.50 16 10 C 0.13 1.47 4.96 -4.05 -0.02 1.45 16 11 C -0.10 -1.19 2.89 -88.96 -0.26 -1.45 16 12 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 13 C -0.12 -1.50 6.19 -24.74 -0.15 -1.65 16 14 C -0.15 -2.33 6.54 -25.07 -0.16 -2.50 16 15 C 0.18 3.24 3.55 -66.81 -0.24 3.00 16 16 H 0.06 1.09 8.09 -51.93 -0.42 0.67 16 17 N -0.75 -17.12 4.88 -52.34 -0.26 -17.38 16 18 C -0.24 -6.73 10.44 -15.06 -0.16 -6.89 16 19 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 20 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 21 N -0.93 -29.33 13.97 55.49 0.78 -28.55 16 22 Si 0.88 22.18 27.73 -169.99 -4.71 17.47 16 23 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 25 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 26 C -0.12 -1.75 6.14 -25.61 -0.16 -1.91 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.11 0.90 6.38 -51.93 -0.33 0.57 16 30 H 0.21 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.18 1.22 7.47 -52.49 -0.39 0.83 16 32 H 0.40 3.07 7.39 -40.82 -0.30 2.77 16 33 H 0.07 0.98 8.02 -51.93 -0.42 0.57 16 34 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.98 7.97 -51.93 -0.41 0.57 16 37 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.36 8.22 5.38 -40.82 -0.22 8.00 16 40 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 41 H 0.07 1.05 7.31 -51.93 -0.38 0.67 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -35.18 344.99 -8.67 -43.85 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.26 Total: 7.25 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -2.60 Total: -2.70 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -0.36 Total: -62.97 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.08 Total: -8.09 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.47 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.18 -8.67 -43.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086747824.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.638 kcal (2) G-P(sol) polarization free energy of solvation -35.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds