Wall clock time and date at job start Tue Mar 31 2020 02:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 120.00305 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00543 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00293 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00004 * 3 2 1 7 7 C 1.38805 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99906 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99580 * 359.71792 * 7 2 1 10 10 C 1.81002 * 99.99786 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47279 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99904 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99698 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99917 * 179.97438 * 13 11 10 15 15 H 1.09013 * 109.38125 * 325.00348 * 14 13 11 16 16 C 1.52589 * 109.38772 * 84.78773 * 14 13 11 17 17 C 1.52623 * 110.62097 * 190.25304 * 16 14 13 18 18 C 1.53031 * 109.89967 * 289.85936 * 17 16 14 19 19 S 1.81674 * 108.99669 * 63.68848 * 18 17 16 20 20 O 1.42099 * 108.66415 * 191.37124 * 19 18 17 21 21 O 1.42109 * 108.66096 * 60.03617 * 19 18 17 22 22 C 1.53040 * 109.38894 * 205.21596 * 14 13 11 23 23 H 0.97000 * 119.99668 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47407 * 300.00715 * 10 9 7 25 25 H 1.09004 * 109.47205 * 60.00275 * 10 9 7 26 26 H 0.97002 * 120.00537 * 0.02562 * 13 11 10 27 27 H 1.09003 * 109.23999 * 310.45174 * 16 14 13 28 28 H 1.09002 * 109.23544 * 69.84424 * 16 14 13 29 29 H 1.08998 * 109.39461 * 169.75344 * 17 16 14 30 30 H 1.09002 * 109.37812 * 49.96142 * 17 16 14 31 31 H 1.09004 * 109.55017 * 303.83694 * 18 17 16 32 32 H 1.09003 * 109.63546 * 183.59091 * 18 17 16 33 33 H 1.08998 * 109.54284 * 296.04871 * 22 14 13 34 34 H 1.08996 * 109.54829 * 56.23471 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 0.0063 10 6 2.5158 -3.8915 0.0035 11 6 1.9873 -5.3028 0.0081 12 8 0.7910 -5.5023 0.0132 13 7 2.8441 -6.3431 0.0065 14 6 2.3304 -7.7151 0.0115 15 1 1.4172 -7.7573 0.6053 16 6 2.0241 -8.1465 -1.4197 17 6 1.2560 -9.4653 -1.4309 18 6 2.1750 -10.6072 -0.9912 19 16 2.6878 -10.3248 0.7286 20 8 3.7371 -11.2294 1.0447 21 8 1.5279 -10.2888 1.5489 22 6 3.3780 -8.6476 0.6238 23 1 -0.4850 0.8401 0.0004 24 1 3.1211 -3.7334 -0.8891 25 1 3.1278 -3.7295 0.8908 26 1 3.8009 -6.1835 0.0027 27 1 1.4229 -7.3780 -1.9057 28 1 2.9594 -8.2688 -1.9659 29 1 0.8904 -9.6628 -2.4386 30 1 0.4105 -9.3973 -0.7462 31 1 3.0548 -10.6354 -1.6341 32 1 1.6412 -11.5549 -1.0617 33 1 4.2685 -8.6583 -0.0046 34 1 3.6401 -8.2964 1.6218 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116068663.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:59 Heat of formation + Delta-G solvation = -146.222997 kcal Electronic energy + Delta-G solvation = -19073.691672 eV Core-core repulsion = 15837.581067 eV Total energy + Delta-G solvation = -3236.110605 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.059 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.92533 -38.43036 -37.77926 -37.09808 -34.99161 -34.57965 -32.24331 -30.09680 -28.55420 -27.65516 -24.28652 -22.35931 -21.65887 -20.00826 -19.64822 -18.17893 -18.00591 -17.12249 -16.96819 -16.87570 -16.55355 -16.44347 -15.83340 -15.76682 -15.29792 -14.73912 -14.54245 -14.25387 -13.89191 -13.64296 -13.25807 -13.16405 -13.10332 -12.90760 -12.88158 -12.66157 -12.58489 -12.38485 -12.08471 -11.87706 -11.71065 -11.27139 -11.13973 -10.86518 -10.26852 -10.19282 -8.66246 -8.34582 -6.12474 -0.97459 1.26365 1.42778 1.46251 1.55875 1.58714 1.71565 2.26140 2.29960 2.69219 2.93410 2.99811 3.31450 3.43129 3.59306 3.76096 3.81923 3.96995 4.07844 4.30117 4.31746 4.37582 4.52131 4.59474 4.69990 4.81441 5.01605 5.17415 5.21461 5.39945 5.42251 6.19928 6.48811 7.06999 7.22920 8.74515 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.046209 B = 0.002978 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.792479 B = 9401.006924 C = 9567.524606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.152 6.152 10 C -0.131 4.131 11 C 0.534 3.466 12 O -0.560 6.560 13 N -0.704 5.704 14 C 0.152 3.848 15 H 0.077 0.923 16 C -0.153 4.153 17 C -0.111 4.111 18 C -0.579 4.579 19 S 2.427 3.573 20 O -0.974 6.974 21 O -0.983 6.983 22 C -0.610 4.610 23 H 0.271 0.729 24 H 0.114 0.886 25 H 0.109 0.891 26 H 0.421 0.579 27 H 0.067 0.933 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.172 0.828 32 H 0.154 0.846 33 H 0.182 0.818 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.826 -20.762 -4.726 24.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.075 5.925 10 C -0.282 4.282 11 C 0.320 3.680 12 O -0.438 6.438 13 N -0.359 5.359 14 C 0.046 3.954 15 H 0.095 0.905 16 C -0.192 4.192 17 C -0.149 4.149 18 C -0.711 4.711 19 S 2.613 3.387 20 O -0.971 6.971 21 O -0.981 6.981 22 C -0.739 4.739 23 H 0.080 0.920 24 H 0.132 0.868 25 H 0.128 0.872 26 H 0.259 0.741 27 H 0.086 0.914 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.089 0.911 31 H 0.190 0.810 32 H 0.172 0.828 33 H 0.200 0.800 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.648 -21.593 -3.921 23.974 hybrid contribution 1.787 1.944 -0.344 2.663 sum 11.436 -19.650 -4.265 23.132 Atomic orbital electron populations 1.70184 1.07983 1.28596 1.48016 1.26125 0.95947 1.03329 0.93763 0.84955 0.78191 0.76047 0.78800 1.19246 1.20480 1.18186 1.23211 0.95368 0.92019 1.58830 0.89835 1.85606 1.10588 0.99272 1.97060 1.23388 1.03574 0.94229 1.06993 1.20102 0.86320 0.86701 0.74918 1.90713 1.17372 1.85978 1.49696 1.45725 1.10502 1.03957 1.75706 1.20674 0.96066 0.80988 0.97666 0.90488 1.22191 1.03551 0.97940 0.95491 1.21259 0.97426 0.90570 1.05690 1.30082 1.12002 1.08337 1.20682 1.07552 0.74521 0.77148 0.79486 1.93567 1.57968 1.61373 1.84179 1.93566 1.50487 1.86847 1.67152 1.30598 1.11034 1.19716 1.12523 0.92017 0.86801 0.87237 0.74087 0.91444 0.86764 0.87007 0.91068 0.81022 0.82800 0.80002 0.83421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.47 13.22 21.65 0.29 -55.19 16 2 C 0.01 0.74 5.49 84.86 0.47 1.20 16 3 Si 1.00 42.91 29.55 68.60 2.03 44.94 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.55 -30.60 9.50 67.96 0.65 -29.95 16 8 H 0.08 4.31 7.80 -2.92 -0.02 4.29 16 9 S -0.15 -8.26 20.57 -56.49 -1.16 -9.42 16 10 C -0.13 -4.85 6.16 71.24 0.44 -4.41 16 11 C 0.53 18.11 7.76 87.66 0.68 18.79 16 12 O -0.56 -24.54 15.52 -3.03 -0.05 -24.58 16 13 N -0.70 -14.73 5.07 -443.10 -2.25 -16.98 16 14 C 0.15 2.73 2.28 44.87 0.10 2.83 16 15 H 0.08 1.91 7.43 -2.38 -0.02 1.90 16 16 C -0.15 -2.11 5.19 30.33 0.16 -1.96 16 17 C -0.11 -1.20 5.74 30.48 0.17 -1.03 16 18 C -0.58 -3.66 6.34 71.99 0.46 -3.21 16 19 S 2.43 33.56 5.31 -56.49 -0.30 33.26 16 20 O -0.97 -19.29 18.10 -127.40 -2.31 -21.60 16 21 O -0.98 -23.98 17.93 -127.40 -2.28 -26.26 16 22 C -0.61 -6.11 5.81 72.00 0.42 -5.69 16 23 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 24 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 25 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 26 H 0.42 5.43 8.60 -92.71 -0.80 4.64 16 27 H 0.07 1.37 8.09 -2.39 -0.02 1.35 16 28 H 0.11 0.71 8.09 -2.39 -0.02 0.69 16 29 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 1.07 8.00 -2.39 -0.02 1.05 16 31 H 0.17 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H 0.15 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.18 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.15 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -89.44 314.21 -2.17 -91.61 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.32 Total: 7.65 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: 3.54 Total: -23.42 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -1.96 Total: -72.17 kcal Atomic # 8 Polarization: -67.81 SS G_CDS: -4.64 Total: -72.45 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: 25.30 SS G_CDS: -1.46 Total: 23.84 kcal Total: -89.44 -2.17 -91.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116068663.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.614 kcal (2) G-P(sol) polarization free energy of solvation -89.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds