Wall clock time and date at job start Tue Mar 31 2020 03:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34230 * 116.99193 * 2 1 4 4 O 1.20822 * 120.00455 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99477 * 180.02562 * 3 2 1 6 6 N 1.46494 * 109.47090 * 179.97438 * 5 3 2 7 7 C 1.37094 * 120.00386 * 264.08469 * 6 5 3 8 8 H 1.07998 * 120.00806 * 196.60230 * 7 6 5 9 9 C 1.38954 * 119.99555 * 16.60585 * 7 6 5 10 10 N 1.31409 * 120.00478 * 20.79176 * 9 7 6 11 11 Si 1.86800 * 119.99871 * 200.79254 * 9 7 6 12 12 H 1.48501 * 109.47485 * 89.99584 * 11 9 7 13 13 H 1.48497 * 109.47157 * 209.99961 * 11 9 7 14 14 H 1.48503 * 109.47154 * 330.00026 * 11 9 7 15 15 C 1.34781 * 119.99849 * 84.08594 * 6 5 3 16 16 O 1.21294 * 120.00223 * 359.97438 * 15 6 5 17 17 C 1.50701 * 120.00118 * 180.02562 * 15 6 5 18 18 N 1.46492 * 109.47195 * 179.97438 * 17 15 6 19 19 C 1.34699 * 126.73510 * 125.00036 * 18 17 15 20 20 N 1.30521 * 108.35006 * 179.97438 * 19 18 17 21 21 C 1.34177 * 109.79876 * 359.97438 * 20 19 18 22 22 C 1.43198 * 125.67792 * 180.02562 * 21 20 19 23 23 N 9.16657 * 96.37819 * 47.31553 * 2 1 3 24 24 N 1.31729 * 108.65159 * 0.27099 * 21 20 19 25 25 H 1.09000 * 109.46736 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47564 * 299.99992 * 1 2 3 27 27 H 1.09000 * 109.47517 * 60.00658 * 1 2 3 28 28 H 1.08995 * 109.47202 * 59.99557 * 5 3 2 29 29 H 1.08998 * 109.46735 * 299.99948 * 5 3 2 30 30 H 0.96994 * 120.00276 * 179.97438 * 10 9 7 31 31 H 1.09007 * 109.47227 * 59.99612 * 17 15 6 32 32 H 1.09005 * 109.46794 * 300.00100 * 17 15 6 33 33 H 1.08003 * 125.82437 * 359.94241 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6799 -0.0011 7 6 4.2928 3.3023 -1.1823 8 1 4.8462 4.2297 -1.1746 9 6 3.8961 2.7400 -2.3894 10 7 2.9077 1.8745 -2.4178 11 14 4.7679 3.2143 -3.9719 12 1 5.9099 2.2937 -4.2032 13 1 3.8171 3.1189 -5.1086 14 1 5.2699 4.6076 -3.8621 15 6 4.0577 3.3605 1.1598 16 8 3.7819 2.8100 2.2048 17 6 4.4843 4.8058 1.1593 18 7 4.4863 5.3149 2.5329 19 6 5.5166 5.8997 3.1739 20 7 5.1256 6.2143 4.3788 21 6 3.8465 5.8479 4.5517 22 6 3.0790 6.0327 5.7464 23 7 2.4704 6.1761 6.6966 24 7 3.4157 5.2851 3.4413 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 3.9557 0.7811 -0.8907 29 1 3.9563 0.7808 0.8892 30 1 2.6306 1.4823 -3.2605 31 1 3.7886 5.3899 0.5567 32 1 5.4868 4.8886 0.7392 33 1 6.4989 6.0773 2.7614 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116306574.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:06 Heat of formation + Delta-G solvation = 32.940738 kcal Electronic energy + Delta-G solvation = -23188.234371 eV Core-core repulsion = 19446.281568 eV Total energy + Delta-G solvation = -3741.952803 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.096 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.08994 -39.61734 -38.48130 -36.54638 -35.64012 -34.80803 -33.75067 -31.85981 -31.40807 -29.38379 -27.70774 -26.25222 -24.96025 -23.73069 -22.21527 -20.50916 -19.51363 -18.59525 -17.69015 -16.77691 -16.70593 -15.84980 -15.72100 -15.51969 -15.25472 -15.05551 -14.53278 -14.40063 -14.11525 -13.34469 -13.28269 -12.93644 -12.81242 -12.70644 -12.55991 -12.20353 -11.85104 -11.57719 -11.50615 -11.34147 -10.97456 -10.80460 -10.61017 -10.13659 -9.92638 -9.89807 -9.77238 -9.72750 -9.18547 -8.80887 -8.22350 -6.74702 -4.27526 1.30368 2.08853 2.24088 2.57351 2.90191 3.03299 3.06871 3.22793 3.45267 3.56684 3.60655 3.76602 3.89343 4.26333 4.61039 4.68503 4.89479 5.41659 5.51589 5.62370 5.65543 5.73436 5.86719 5.92119 6.08899 6.16413 6.25300 6.44761 6.72931 7.03948 7.24758 7.34330 7.41408 7.90582 7.92654 8.70316 8.94803 9.05950 9.44416 10.31697 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.015523 B = 0.005208 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.357115 B = 5374.808562 C = 6826.405179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.484 3.516 4 O -0.497 6.497 5 C 0.158 3.842 6 N -0.420 5.420 7 C -0.353 4.353 8 H 0.106 0.894 9 C 0.044 3.956 10 N -0.859 5.859 11 Si 0.929 3.071 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.268 1.268 15 C 0.453 3.547 16 O -0.576 6.576 17 C 0.123 3.877 18 N -0.338 5.338 19 C 0.263 3.737 20 N -0.517 5.517 21 C 0.269 3.731 22 C 0.323 3.677 23 N -0.382 5.382 24 N -0.213 5.213 25 H 0.086 0.914 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.126 0.874 29 H 0.084 0.916 30 H 0.277 0.723 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.333 1.498 -0.697 5.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.325 3.675 4 O -0.382 6.382 5 C 0.033 3.967 6 N -0.140 5.140 7 C -0.479 4.479 8 H 0.124 0.876 9 C -0.163 4.163 10 N -0.496 5.496 11 Si 0.755 3.245 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.192 1.192 15 C 0.240 3.760 16 O -0.460 6.460 17 C -0.001 4.001 18 N -0.130 5.130 19 C -0.034 4.034 20 N -0.245 5.245 21 C -0.013 4.013 22 C 0.003 3.997 23 N -0.061 5.061 24 N -0.046 5.046 25 H 0.105 0.895 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.144 0.856 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 3.430 1.470 1.130 3.899 hybrid contribution 0.439 0.105 -1.854 1.908 sum 3.869 1.575 -0.724 4.239 Atomic orbital electron populations 1.22949 0.78475 1.01916 1.01728 1.86446 1.21852 1.35336 1.85657 1.23849 0.92208 0.80675 0.70784 1.90531 1.66465 1.36341 1.44853 1.20491 0.87481 0.84907 1.03836 1.43325 1.56680 1.08265 1.05685 1.19609 1.35885 1.10142 0.82279 0.87608 1.25262 0.94476 0.96690 0.99883 1.69839 1.22094 1.29160 1.28472 0.85894 0.79027 0.79222 0.80346 1.19948 1.20868 1.19217 1.19780 0.84192 0.87360 0.84714 1.90667 1.54548 1.69148 1.31625 1.21772 1.05938 0.96270 0.76145 1.50298 1.08063 1.42076 1.12583 1.26067 0.95722 0.93806 0.87765 1.70465 1.10012 1.26721 1.17336 1.18144 0.90217 1.02441 0.90455 1.22997 0.92375 0.93699 0.90608 1.81306 1.07757 1.07711 1.09333 1.78727 1.09706 1.17539 0.98678 0.89520 0.93056 0.92557 0.85642 0.89840 0.91263 0.86035 0.85334 0.75332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.56 101.05 1.07 1.81 16 2 O -0.38 -7.82 10.57 -39.26 -0.41 -8.23 16 3 C 0.48 11.41 6.13 36.01 0.22 11.63 16 4 O -0.50 -13.26 15.79 -18.75 -0.30 -13.55 16 5 C 0.16 3.47 5.14 -5.19 -0.03 3.45 16 6 N -0.42 -9.21 2.18 -116.10 -0.25 -9.47 16 7 C -0.35 -7.46 9.15 -14.93 -0.14 -7.59 16 8 H 0.11 1.93 6.55 -52.49 -0.34 1.59 16 9 C 0.04 0.95 4.90 -17.47 -0.09 0.87 16 10 N -0.86 -20.20 9.24 55.50 0.51 -19.69 16 11 Si 0.93 16.82 29.60 -169.99 -5.03 11.79 16 12 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 13 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 14 H -0.27 -4.65 7.11 56.52 0.40 -4.25 16 15 C 0.45 9.56 7.46 -10.98 -0.08 9.48 16 16 O -0.58 -14.05 15.41 5.55 0.09 -13.97 16 17 C 0.12 1.91 5.47 -5.20 -0.03 1.88 16 18 N -0.34 -5.35 3.42 -63.82 -0.22 -5.57 16 19 C 0.26 3.23 12.61 -90.67 -1.14 2.09 16 20 N -0.52 -7.78 11.22 -13.78 -0.15 -7.93 16 21 C 0.27 4.59 7.82 -158.51 -1.24 3.35 16 22 C 0.32 5.41 16.01 -22.43 -0.36 5.05 16 23 N -0.38 -6.54 18.55 41.89 0.78 -5.76 16 24 N -0.21 -4.06 11.85 30.96 0.37 -3.69 16 25 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 27 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 28 H 0.13 2.71 6.34 -51.93 -0.33 2.38 16 29 H 0.08 1.72 7.61 -51.93 -0.40 1.33 16 30 H 0.28 6.25 8.31 -40.82 -0.34 5.91 16 31 H 0.12 1.87 8.10 -51.92 -0.42 1.45 16 32 H 0.13 1.41 7.64 -51.93 -0.40 1.01 16 33 H 0.23 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 311.38 15.07 4.69 4.69 Total: -1.00 -32.29 311.38 -4.46 -36.74 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -2.71 Total: 2.63 kcal Atomic # 6 Polarization: 33.83 SS G_CDS: -1.81 Total: 32.01 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 1.03 Total: -52.11 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -0.63 Total: -35.75 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.79 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.29 -4.46 -36.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116306574.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.682 kcal (2) G-P(sol) polarization free energy of solvation -32.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds