Wall clock time and date at job start Tue Mar 31 2020 03:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34230 * 116.99193 * 2 1 4 4 O 1.20822 * 120.00455 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99477 * 180.02562 * 3 2 1 6 6 N 1.46494 * 109.47090 * 179.97438 * 5 3 2 7 7 C 1.37094 * 120.00386 * 264.08469 * 6 5 3 8 8 H 1.07998 * 120.00806 * 196.60230 * 7 6 5 9 9 C 1.38954 * 119.99555 * 16.60585 * 7 6 5 10 10 N 1.31409 * 120.00478 * 20.79176 * 9 7 6 11 11 Si 1.86800 * 119.99871 * 200.79254 * 9 7 6 12 12 H 1.48501 * 109.47485 * 89.99584 * 11 9 7 13 13 H 1.48497 * 109.47157 * 209.99961 * 11 9 7 14 14 H 1.48503 * 109.47154 * 330.00026 * 11 9 7 15 15 C 1.34781 * 119.99849 * 84.08594 * 6 5 3 16 16 O 1.21294 * 120.00223 * 359.97438 * 15 6 5 17 17 C 1.50701 * 120.00118 * 180.02562 * 15 6 5 18 18 N 1.46492 * 109.47195 * 179.97438 * 17 15 6 19 19 C 1.34699 * 126.73510 * 125.00036 * 18 17 15 20 20 N 1.30521 * 108.35006 * 179.97438 * 19 18 17 21 21 C 1.34177 * 109.79876 * 359.97438 * 20 19 18 22 22 C 1.43198 * 125.67792 * 180.02562 * 21 20 19 23 23 N 9.16657 * 96.37819 * 47.31553 * 2 1 3 24 24 N 1.31729 * 108.65159 * 0.27099 * 21 20 19 25 25 H 1.09000 * 109.46736 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47564 * 299.99992 * 1 2 3 27 27 H 1.09000 * 109.47517 * 60.00658 * 1 2 3 28 28 H 1.08995 * 109.47202 * 59.99557 * 5 3 2 29 29 H 1.08998 * 109.46735 * 299.99948 * 5 3 2 30 30 H 0.96994 * 120.00276 * 179.97438 * 10 9 7 31 31 H 1.09007 * 109.47227 * 59.99612 * 17 15 6 32 32 H 1.09005 * 109.46794 * 300.00100 * 17 15 6 33 33 H 1.08003 * 125.82437 * 359.94241 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6799 -0.0011 7 6 4.2928 3.3023 -1.1823 8 1 4.8462 4.2297 -1.1746 9 6 3.8961 2.7400 -2.3894 10 7 2.9077 1.8745 -2.4178 11 14 4.7679 3.2143 -3.9719 12 1 5.9099 2.2937 -4.2032 13 1 3.8171 3.1189 -5.1086 14 1 5.2699 4.6076 -3.8621 15 6 4.0577 3.3605 1.1598 16 8 3.7819 2.8100 2.2048 17 6 4.4843 4.8058 1.1593 18 7 4.4863 5.3149 2.5329 19 6 5.5166 5.8997 3.1739 20 7 5.1256 6.2143 4.3788 21 6 3.8465 5.8479 4.5517 22 6 3.0790 6.0327 5.7464 23 7 2.4704 6.1761 6.6966 24 7 3.4157 5.2851 3.4413 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 3.9557 0.7811 -0.8907 29 1 3.9563 0.7808 0.8892 30 1 2.6306 1.4823 -3.2605 31 1 3.7886 5.3899 0.5567 32 1 5.4868 4.8886 0.7392 33 1 6.4989 6.0773 2.7614 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116306574.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:06 Heat of formation + Delta-G solvation = 12.403479 kcal Electronic energy + Delta-G solvation = -23189.124934 eV Core-core repulsion = 19446.281568 eV Total energy + Delta-G solvation = -3742.843365 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.096 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.25636 -41.33951 -40.13188 -37.88196 -37.33236 -36.55571 -35.02366 -33.50878 -32.60192 -30.92556 -29.09389 -27.76059 -26.54258 -25.04559 -23.34166 -22.15930 -21.13913 -19.80513 -19.22588 -18.47180 -18.26565 -17.32451 -17.22911 -16.99958 -16.79862 -16.14291 -16.01362 -15.88707 -15.60102 -14.77776 -14.63620 -14.38103 -14.22305 -14.15802 -14.09782 -13.55282 -13.36694 -13.09950 -12.91276 -12.80863 -12.51765 -12.40288 -12.01662 -11.59776 -11.53615 -11.31506 -11.15796 -10.99920 -10.93220 -10.36397 -9.91395 -8.36254 -5.93769 0.04804 0.90822 1.14814 1.30544 1.45225 1.59106 1.66765 1.70428 1.78425 2.19398 2.26234 2.33888 2.37758 2.80291 3.13392 3.59494 3.86955 4.05418 4.25197 4.31995 4.37272 4.37855 4.41742 4.51658 4.67235 4.69404 4.75811 5.00391 5.44594 5.60818 5.70158 5.73672 6.03181 6.29393 6.76119 7.07286 7.18962 7.42802 7.83667 8.70771 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.015523 B = 0.005208 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.357115 B = 5374.808562 C = 6826.405179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.379 6.379 3 C 0.483 3.517 4 O -0.537 6.537 5 C 0.156 3.844 6 N -0.431 5.431 7 C -0.358 4.358 8 H 0.139 0.861 9 C -0.003 4.003 10 N -0.898 5.898 11 Si 0.997 3.003 12 H -0.271 1.271 13 H -0.303 1.303 14 H -0.247 1.247 15 C 0.440 3.560 16 O -0.617 6.617 17 C 0.132 3.868 18 N -0.349 5.349 19 C 0.291 3.709 20 N -0.532 5.532 21 C 0.268 3.732 22 C 0.329 3.671 23 N -0.395 5.395 24 N -0.270 5.270 25 H 0.133 0.867 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.125 0.875 29 H 0.088 0.912 30 H 0.271 0.729 31 H 0.123 0.877 32 H 0.186 0.814 33 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.639 2.596 -1.602 8.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.296 6.296 3 C 0.326 3.674 4 O -0.425 6.425 5 C 0.030 3.970 6 N -0.150 5.150 7 C -0.484 4.484 8 H 0.157 0.843 9 C -0.205 4.205 10 N -0.536 5.536 11 Si 0.821 3.179 12 H -0.197 1.197 13 H -0.230 1.230 14 H -0.170 1.170 15 C 0.229 3.771 16 O -0.503 6.503 17 C 0.009 3.991 18 N -0.140 5.140 19 C -0.003 4.003 20 N -0.261 5.261 21 C -0.013 4.013 22 C 0.009 3.991 23 N -0.074 5.074 24 N -0.104 5.104 25 H 0.152 0.848 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.143 0.857 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.141 0.859 32 H 0.203 0.797 33 H 0.309 0.691 Dipole moment (debyes) X Y Z Total from point charges 5.757 2.571 0.230 6.310 hybrid contribution -0.312 -0.292 -1.532 1.591 sum 5.446 2.279 -1.302 6.045 Atomic orbital electron populations 1.23270 0.76310 1.04811 1.01080 1.86425 1.24021 1.34061 1.85054 1.24210 0.92898 0.80707 0.69556 1.90493 1.67431 1.37649 1.46959 1.20528 0.86649 0.85974 1.03830 1.43613 1.56666 1.08252 1.06505 1.20278 1.35347 1.10945 0.81839 0.84333 1.26152 0.94752 0.96729 1.02879 1.69964 1.23962 1.31030 1.28636 0.84851 0.77295 0.79897 0.75848 1.19673 1.22955 1.17034 1.20755 0.83162 0.89435 0.83715 1.90638 1.56034 1.70684 1.32952 1.21865 1.08921 0.91883 0.76467 1.50307 1.08242 1.43019 1.12476 1.27351 0.96513 0.90241 0.86200 1.70512 1.09030 1.27641 1.18925 1.18172 0.91033 1.02159 0.89960 1.23099 0.92101 0.93306 0.90576 1.81294 1.08109 1.08200 1.09824 1.78643 1.12325 1.19380 1.00013 0.84849 0.93444 0.93493 0.85706 0.89407 0.91918 0.85898 0.79692 0.69074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.32 10.56 113.37 1.20 2.51 16 2 O -0.38 -15.99 10.57 -51.42 -0.54 -16.53 16 3 C 0.48 23.33 6.13 71.24 0.44 23.77 16 4 O -0.54 -29.48 15.79 21.98 0.35 -29.14 16 5 C 0.16 6.94 5.14 85.64 0.44 7.38 16 6 N -0.43 -18.61 2.18 -639.61 -1.39 -20.00 16 7 C -0.36 -14.44 9.15 84.04 0.77 -13.67 16 8 H 0.14 4.48 6.55 -2.91 -0.02 4.46 16 9 C 0.00 -0.11 4.90 84.93 0.42 0.31 16 10 N -0.90 -42.66 9.24 21.66 0.20 -42.46 16 11 Si 1.00 33.20 29.60 68.60 2.03 35.23 16 12 H -0.27 -8.83 7.11 99.48 0.71 -8.12 16 13 H -0.30 -10.96 7.11 99.48 0.71 -10.25 16 14 H -0.25 -7.33 7.11 99.48 0.71 -6.63 16 15 C 0.44 18.14 7.46 87.66 0.65 18.80 16 16 O -0.62 -30.26 15.41 -3.07 -0.05 -30.31 16 17 C 0.13 3.70 5.47 85.63 0.47 4.17 16 18 N -0.35 -10.15 3.42 -355.82 -1.22 -11.36 16 19 C 0.29 5.99 12.61 180.37 2.27 8.26 16 20 N -0.53 -14.76 11.22 -197.53 -2.22 -16.97 16 21 C 0.27 8.98 7.82 135.87 1.06 10.04 16 22 C 0.33 11.04 16.01 88.31 1.41 12.45 16 23 N -0.39 -13.57 18.55 19.02 0.35 -13.22 16 24 N -0.27 -10.16 11.85 -55.97 -0.66 -10.82 16 25 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16 26 H 0.05 1.62 8.13 -2.39 -0.02 1.61 16 27 H 0.05 1.66 8.13 -2.39 -0.02 1.64 16 28 H 0.13 5.49 6.34 -2.39 -0.02 5.48 16 29 H 0.09 3.72 7.61 -2.39 -0.02 3.70 16 30 H 0.27 12.52 8.31 -92.71 -0.77 11.75 16 31 H 0.12 3.45 8.10 -2.38 -0.02 3.43 16 32 H 0.19 2.98 7.64 -2.38 -0.02 2.96 16 33 H 0.29 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -73.91 311.38 7.16 -66.75 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 1.18 Total: 14.81 kcal Atomic # 6 Polarization: 64.89 SS G_CDS: 9.13 Total: 74.02 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -4.93 Total: -114.83 kcal Atomic # 8 Polarization: -75.73 SS G_CDS: -0.24 Total: -75.98 kcal Atomic # 14 Polarization: 33.20 SS G_CDS: 2.03 Total: 35.23 kcal Total: -73.91 7.16 -66.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116306574.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.153 kcal (2) G-P(sol) polarization free energy of solvation -73.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds