Wall clock time and date at job start Tue Mar 31 2020 03:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36937 * 119.99343 * 2 1 4 4 H 1.08004 * 119.99214 * 202.31203 * 3 2 1 5 5 C 1.38803 * 120.00615 * 22.31481 * 3 2 1 6 6 N 1.31625 * 119.99811 * 11.14149 * 5 3 2 7 7 Si 1.86793 * 120.00421 * 191.14669 * 5 3 2 8 8 H 1.48503 * 109.46922 * 359.97438 * 7 5 3 9 9 H 1.48506 * 109.47619 * 119.99787 * 7 5 3 10 10 H 1.48502 * 109.47604 * 239.99844 * 7 5 3 11 11 S 1.65597 * 120.00206 * 179.97438 * 2 1 3 12 12 O 1.42104 * 106.40114 * 156.46132 * 11 2 1 13 13 O 1.42099 * 106.40458 * 23.54302 * 11 2 1 14 14 C 1.76198 * 107.21856 * 270.00113 * 11 2 1 15 15 C 1.39409 * 119.51951 * 270.26940 * 14 11 2 16 16 C 1.36059 * 120.97504 * 180.28856 * 15 14 11 17 17 C 1.40585 * 119.71055 * 359.44435 * 16 15 14 18 18 N 1.33758 * 121.10811 * 180.29927 * 17 16 15 19 19 C 1.31333 * 119.70707 * 179.97438 * 18 17 16 20 20 C 1.39673 * 120.71450 * 0.02562 * 19 18 17 21 21 N 1.31333 * 120.70916 * 359.97438 * 20 19 18 22 22 C 1.33748 * 119.70472 * 0.02562 * 21 20 19 23 23 C 1.36064 * 119.51877 * 90.00218 * 14 11 2 24 24 H 1.09003 * 109.47352 * 274.21529 * 1 2 3 25 25 H 1.09000 * 109.47674 * 34.22496 * 1 2 3 26 26 H 1.09004 * 109.46949 * 154.22298 * 1 2 3 27 27 H 0.97006 * 120.00165 * 180.02562 * 6 5 3 28 28 H 1.08000 * 119.51233 * 0.02562 * 15 14 11 29 29 H 1.07999 * 120.14488 * 179.72380 * 16 15 14 30 30 H 1.08000 * 119.63876 * 179.97438 * 19 18 17 31 31 H 1.08003 * 119.64532 * 179.97438 * 20 19 18 32 32 H 1.08003 * 120.14165 * 0.02562 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1690 1.2210 -0.3551 5 6 1.5335 2.3431 0.4564 6 7 0.3815 2.2697 1.0889 7 14 2.3391 4.0043 0.1729 8 1 3.6191 3.8158 -0.5560 9 1 1.4329 4.8632 -0.6312 10 1 2.6060 4.6548 1.4809 11 16 2.2931 -1.4341 0.0006 12 8 3.5760 -1.1569 -0.5439 13 8 1.4115 -2.4067 -0.5434 14 6 2.5538 -1.8850 1.6839 15 6 3.7033 -1.4495 2.3415 16 6 3.9373 -1.7851 3.6391 17 6 3.0033 -2.5728 4.3344 18 7 3.2022 -2.9140 5.6124 19 6 2.3112 -3.6505 6.2356 20 6 1.1570 -4.0825 5.5783 21 7 0.9392 -3.7605 4.3239 22 6 1.8318 -3.0113 3.6674 23 6 1.6277 -2.6487 2.3245 24 1 -0.3634 0.0755 1.0249 25 1 -0.3634 0.8497 -0.5780 26 1 -0.3633 -0.9254 -0.4469 27 1 -0.0492 3.0783 1.4076 28 1 4.4208 -0.8403 1.8118 29 1 4.8345 -1.4440 4.1342 30 1 2.4732 -3.9258 7.2673 31 1 0.4358 -4.6879 6.1074 32 1 0.7400 -2.9755 1.8034 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198134403.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:12 Heat of formation + Delta-G solvation = -12.700956 kcal Electronic energy + Delta-G solvation = -21136.464003 eV Core-core repulsion = 17802.992147 eV Total energy + Delta-G solvation = -3333.471855 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.43865 -38.53233 -37.86257 -37.56639 -36.44550 -35.90473 -33.39464 -31.96647 -31.74456 -28.35769 -26.53579 -25.48147 -25.34345 -23.49458 -20.82500 -19.96822 -19.44263 -18.83358 -18.26089 -18.02447 -17.23364 -16.52176 -16.22826 -16.13702 -15.71860 -15.37667 -15.08382 -14.87060 -14.62497 -13.94407 -13.73505 -13.30633 -13.11606 -13.07737 -12.96254 -12.88844 -12.80957 -12.71254 -12.68709 -12.35642 -12.16655 -11.92052 -11.72337 -11.15055 -10.26643 -10.22356 -9.99561 -9.79501 -8.42195 -5.98667 -1.01613 -0.63973 -0.17451 0.74044 1.50822 1.51978 1.54997 1.66759 2.25376 2.58318 2.81455 2.91584 2.96142 3.03631 3.15285 3.20184 3.67574 3.77428 3.90449 4.07581 4.23812 4.36784 4.51880 4.55465 4.73387 4.85939 4.99900 5.03155 5.15644 5.21075 5.34449 5.55057 5.55973 6.13928 6.36237 6.61349 6.73681 7.19099 8.54405 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.018648 B = 0.005756 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.155378 B = 4863.125019 C = 5304.953498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.813 5.813 3 C -0.269 4.269 4 H 0.115 0.885 5 C -0.001 4.001 6 N -0.856 5.856 7 Si 0.991 3.009 8 H -0.257 1.257 9 H -0.269 1.269 10 H -0.274 1.274 11 S 2.543 3.457 12 O -1.001 7.001 13 O -1.015 7.015 14 C -0.651 4.651 15 C -0.035 4.035 16 C -0.105 4.105 17 C 0.084 3.916 18 N -0.452 5.452 19 C 0.100 3.900 20 C 0.080 3.920 21 N -0.448 5.448 22 C 0.034 3.966 23 C 0.001 3.999 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.281 0.719 28 H 0.150 0.850 29 H 0.165 0.835 30 H 0.231 0.769 31 H 0.227 0.773 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.890 -5.139 10.437 11.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.637 5.637 3 C -0.416 4.416 4 H 0.133 0.867 5 C -0.211 4.211 6 N -0.495 5.495 7 Si 0.813 3.187 8 H -0.180 1.180 9 H -0.194 1.194 10 H -0.199 1.199 11 S 2.642 3.358 12 O -0.990 6.990 13 O -1.004 7.004 14 C -0.731 4.731 15 C -0.055 4.055 16 C -0.125 4.125 17 C -0.038 4.038 18 N -0.166 5.166 19 C -0.077 4.077 20 C -0.097 4.097 21 N -0.162 5.162 22 C -0.088 4.088 23 C -0.020 4.020 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.168 0.832 29 H 0.182 0.818 30 H 0.247 0.753 31 H 0.243 0.757 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.121 -5.700 9.583 11.206 hybrid contribution 0.061 0.660 0.663 0.937 sum 1.182 -5.040 10.246 11.479 Atomic orbital electron populations 1.21302 0.78525 1.00511 1.01545 1.54141 1.13641 1.18716 1.77223 1.20299 1.01476 0.83695 1.36158 0.86713 1.26540 0.96743 1.03918 0.93924 1.70182 1.16022 1.31483 1.31824 0.84884 0.79077 0.76232 0.78520 1.18038 1.19405 1.19930 1.10997 0.73221 0.74331 0.77256 1.93315 1.42241 1.84910 1.78575 1.93316 1.65658 1.62237 1.79230 1.32139 1.01798 1.07493 1.31713 1.20786 0.94766 0.95429 0.94561 1.21084 0.99749 0.97807 0.93874 1.19751 0.94442 0.97675 0.91965 1.68797 1.30380 1.11077 1.06392 1.25098 0.89291 0.90201 1.03109 1.25036 0.98180 0.96520 0.89986 1.68688 1.27955 1.09029 1.10520 1.19689 0.93739 0.99468 0.95946 1.20626 0.97528 0.91895 0.91932 0.93671 0.90834 0.92560 0.90844 0.83234 0.81758 0.75304 0.75681 0.84049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.76 8.92 127.77 1.14 6.90 16 2 N -0.81 -39.28 3.31 -364.89 -1.21 -40.49 16 3 C -0.27 -13.13 9.44 84.03 0.79 -12.34 16 4 H 0.12 5.57 7.16 -2.91 -0.02 5.54 16 5 C 0.00 -0.04 5.13 84.86 0.44 0.40 16 6 N -0.86 -40.80 10.57 21.65 0.23 -40.57 16 7 Si 0.99 36.54 29.57 68.60 2.03 38.57 16 8 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 9 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 10 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 11 S 2.54 120.80 5.64 -56.49 -0.32 120.48 16 12 O -1.00 -50.83 16.03 -128.00 -2.05 -52.88 16 13 O -1.01 -50.73 15.77 -128.00 -2.02 -52.74 16 14 C -0.65 -28.21 5.94 22.05 0.13 -28.08 16 15 C -0.03 -1.37 9.42 22.05 0.21 -1.16 16 16 C -0.11 -3.68 9.99 22.34 0.22 -3.45 16 17 C 0.08 2.94 6.59 40.29 0.27 3.21 16 18 N -0.45 -12.92 10.46 -188.09 -1.97 -14.89 16 19 C 0.10 1.89 11.21 85.11 0.95 2.84 16 20 C 0.08 1.61 11.21 85.11 0.95 2.57 16 21 N -0.45 -14.24 10.46 -188.09 -1.97 -16.21 16 22 C 0.03 1.28 6.59 40.30 0.27 1.54 16 23 C 0.00 0.04 9.43 22.34 0.21 0.25 16 24 H 0.04 2.08 7.42 -2.39 -0.02 2.06 16 25 H 0.07 3.33 7.18 -2.39 -0.02 3.31 16 26 H 0.06 2.38 6.93 -2.38 -0.02 2.36 16 27 H 0.28 12.43 8.31 -92.70 -0.77 11.66 16 28 H 0.15 5.59 7.58 -2.91 -0.02 5.56 16 29 H 0.16 4.66 8.06 -2.91 -0.02 4.64 16 30 H 0.23 1.58 8.06 -2.91 -0.02 1.56 16 31 H 0.23 1.97 8.06 -2.91 -0.02 1.94 16 32 H 0.14 5.84 7.54 -2.91 -0.02 5.82 16 Total: -1.00 -67.76 293.30 -0.53 -68.29 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 1.16 Total: 17.79 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: 5.58 Total: -27.34 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -4.92 Total: -112.16 kcal Atomic # 8 Polarization: -101.55 SS G_CDS: -4.07 Total: -105.62 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 2.03 Total: 38.57 kcal Atomic # 16 Polarization: 120.80 SS G_CDS: -0.32 Total: 120.48 kcal Total: -67.76 -0.53 -68.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198134403.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.592 kcal (2) G-P(sol) polarization free energy of solvation -67.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds