Wall clock time and date at job start Tue Mar 31 2020 03:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00239 * 2 1 4 4 H 1.48503 * 109.47321 * 240.00226 * 3 2 1 5 5 H 1.48496 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46980 * 120.00503 * 3 2 1 7 7 C 1.37881 * 119.99568 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00048 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47555 * 299.99868 * 9 7 2 11 11 O 1.42897 * 109.47380 * 60.00577 * 9 7 2 12 12 C 1.53006 * 109.46963 * 180.02562 * 9 7 2 13 13 N 1.46907 * 109.47006 * 180.02562 * 12 9 7 14 14 C 1.46508 * 110.94126 * 289.95783 * 13 12 9 15 15 C 1.53186 * 109.82210 * 162.92915 * 14 13 12 16 16 S 1.81815 * 108.67525 * 62.67275 * 15 14 13 17 17 O 1.42103 * 108.70313 * 193.42659 * 16 15 14 18 18 O 1.42096 * 108.83195 * 61.98138 * 16 15 14 19 19 C 1.81819 * 101.02280 * 307.68138 * 16 15 14 20 20 C 1.46467 * 110.99665 * 164.17677 * 13 12 9 21 21 H 1.09005 * 109.39848 * 76.95598 * 20 13 12 22 22 C 1.50703 * 109.40371 * 317.12910 * 20 13 12 23 23 O 1.20819 * 119.99836 * 322.62132 * 22 20 13 24 24 O 1.34220 * 120.00103 * 142.89732 * 22 20 13 25 25 H 0.96999 * 119.99558 * 359.97438 * 1 2 3 26 26 H 0.96699 * 114.00114 * 59.99604 * 11 9 7 27 27 H 1.08997 * 109.47240 * 59.99511 * 12 9 7 28 28 H 1.09005 * 109.47029 * 299.99413 * 12 9 7 29 29 H 1.08999 * 109.41080 * 42.84149 * 14 13 12 30 30 H 1.08994 * 109.46640 * 283.05313 * 14 13 12 31 31 H 1.08997 * 109.60232 * 302.91470 * 15 14 13 32 32 H 1.09000 * 109.60139 * 182.42766 * 15 14 13 33 33 H 1.09002 * 109.59834 * 292.56292 * 19 16 15 34 34 H 1.08991 * 109.74042 * 172.15517 * 19 16 15 35 35 H 0.96698 * 117.00141 * 179.72948 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8897 11 8 0.4290 -2.5746 -1.1670 12 6 2.2451 -3.6621 -0.0005 13 7 1.5105 -4.9343 -0.0012 14 6 0.8438 -5.1546 1.2847 15 6 -0.2346 -6.2320 1.1328 16 16 0.5657 -7.7938 0.6576 17 8 -0.4339 -8.7019 0.2155 18 8 1.4547 -8.1876 1.6938 19 6 1.5445 -7.2599 -0.7786 20 6 2.3875 -6.0466 -0.3740 21 1 3.0181 -6.3108 0.4750 22 6 3.2566 -5.6320 -1.5333 23 8 2.8055 -4.9271 -2.4047 24 8 4.5302 -6.0503 -1.6005 25 1 -0.4849 0.8401 0.0004 26 1 0.9208 -2.5291 -1.9984 27 1 2.8718 -3.6044 0.8894 28 1 2.8717 -3.6045 -0.8906 29 1 0.3823 -4.2249 1.6174 30 1 1.5771 -5.4780 2.0234 31 1 -0.9429 -5.9340 0.3598 32 1 -0.7572 -6.3624 2.0804 33 1 0.8763 -6.9852 -1.5948 34 1 2.1996 -8.0699 -1.0993 35 1 5.0473 -5.7617 -2.3649 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574479508.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:21 Heat of formation + Delta-G solvation = -185.215905 kcal Electronic energy + Delta-G solvation = -22950.794636 eV Core-core repulsion = 19270.240300 eV Total energy + Delta-G solvation = -3680.554336 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.086 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.72472 -38.21259 -37.07399 -36.16504 -36.05465 -35.33572 -32.32156 -32.12557 -31.06912 -27.74043 -25.67676 -24.53560 -23.02712 -21.00150 -20.13479 -19.00358 -18.24786 -17.53796 -16.81662 -16.72401 -16.17365 -15.80909 -15.68116 -15.16393 -14.96272 -14.62128 -14.01598 -13.98364 -13.83716 -13.29133 -12.76854 -12.72561 -12.48391 -12.29752 -12.15669 -12.04375 -11.91809 -11.71080 -11.26388 -11.17347 -10.95635 -10.88420 -10.64624 -10.47246 -10.12124 -10.10930 -9.12955 -8.62012 -8.39320 -7.99545 -6.06394 -4.25161 -0.12617 2.07347 2.44448 2.82460 3.25096 3.30919 3.31797 3.48378 3.59397 3.95805 4.27685 4.35541 4.52841 4.71220 4.81037 5.04549 5.06729 5.19221 5.21972 5.47189 5.74045 5.75708 5.93312 6.05141 6.33224 6.41547 6.64321 6.96357 7.01599 7.64798 7.77781 7.85764 8.11064 8.77199 9.41539 9.57357 10.97673 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.021995 B = 0.005158 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.705612 B = 5426.732594 C = 6168.858658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.082 3.918 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.577 4.577 8 H 0.053 0.947 9 C 0.243 3.757 10 H 0.056 0.944 11 O -0.552 6.552 12 C 0.016 3.984 13 N -0.524 5.524 14 C 0.065 3.935 15 C -0.587 4.587 16 S 2.419 3.581 17 O -0.940 6.940 18 O -0.938 6.938 19 C -0.597 4.597 20 C 0.107 3.893 21 H 0.088 0.912 22 C 0.488 3.512 23 O -0.475 6.475 24 O -0.519 6.519 25 H 0.262 0.738 26 H 0.347 0.653 27 H 0.038 0.962 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.057 0.943 31 H 0.150 0.850 32 H 0.140 0.860 33 H 0.153 0.847 34 H 0.140 0.860 35 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.623 -13.622 0.163 14.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.125 4.125 3 Si 0.718 3.282 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.615 4.615 8 H 0.072 0.928 9 C 0.185 3.815 10 H 0.073 0.927 11 O -0.354 6.354 12 C -0.110 4.110 13 N -0.252 5.252 14 C -0.063 4.063 15 C -0.718 4.718 16 S 2.602 3.398 17 O -0.938 6.938 18 O -0.936 6.936 19 C -0.725 4.725 20 C -0.003 4.003 21 H 0.106 0.894 22 C 0.326 3.674 23 O -0.359 6.359 24 O -0.331 6.331 25 H 0.071 0.929 26 H 0.191 0.809 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.137 0.863 30 H 0.075 0.925 31 H 0.168 0.832 32 H 0.158 0.842 33 H 0.171 0.829 34 H 0.158 0.842 35 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 3.186 -14.328 0.740 14.697 hybrid contribution 1.997 1.897 -0.762 2.858 sum 5.183 -12.431 -0.022 13.469 Atomic orbital electron populations 1.70057 1.05891 1.26641 1.46651 1.24993 0.94699 0.99060 0.93735 0.86719 0.79722 0.83137 0.78672 1.20150 1.21138 1.20192 1.21553 0.93066 0.91490 1.55405 0.92849 1.19257 0.87487 0.87944 0.86820 0.92661 1.86512 1.37631 1.96189 1.15081 1.23503 0.98243 0.88293 1.00990 1.61374 1.31084 1.01664 1.31031 1.21865 0.94426 1.00605 0.89431 1.30182 1.11028 1.17497 1.13122 1.08007 0.76770 0.78019 0.77039 1.93597 1.57981 1.60068 1.82106 1.93590 1.65364 1.80855 1.53753 1.30353 1.14063 1.05519 1.22574 1.20755 0.92076 0.91958 0.95541 0.89398 1.22714 0.80474 0.77086 0.87081 1.90788 1.73401 1.32956 1.38755 1.84509 1.25008 1.72006 1.51599 0.92850 0.80900 0.94408 0.90076 0.86324 0.92506 0.83227 0.84208 0.82925 0.84201 0.72868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.62 12.84 55.43 0.71 -23.91 16 2 C 0.08 2.22 5.40 -17.82 -0.10 2.13 16 3 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.58 -15.25 8.76 -34.44 -0.30 -15.55 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.24 5.79 2.80 -27.88 -0.08 5.71 16 10 H 0.06 1.40 6.44 -51.93 -0.33 1.07 16 11 O -0.55 -13.91 12.60 -35.23 -0.44 -14.35 16 12 C 0.02 0.30 4.13 -3.82 -0.02 0.28 16 13 N -0.52 -8.18 4.02 -228.47 -0.92 -9.10 16 14 C 0.07 0.88 5.25 -3.94 -0.02 0.86 16 15 C -0.59 -6.32 6.58 37.25 0.24 -6.07 16 16 S 2.42 26.74 5.34 -107.50 -0.57 26.16 16 17 O -0.94 -13.04 18.11 -57.81 -1.05 -14.09 16 18 O -0.94 -12.66 18.10 -57.81 -1.05 -13.71 16 19 C -0.60 -6.23 5.83 37.25 0.22 -6.02 16 20 C 0.11 1.40 2.36 -69.00 -0.16 1.23 16 21 H 0.09 1.01 7.93 -51.93 -0.41 0.60 16 22 C 0.49 6.75 5.90 36.01 0.21 6.96 16 23 O -0.47 -8.12 15.86 -18.74 -0.30 -8.42 16 24 O -0.52 -5.49 13.42 -39.23 -0.53 -6.02 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.35 8.33 9.04 45.56 0.41 8.74 16 27 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 28 H 0.08 1.59 5.03 -51.93 -0.26 1.33 16 29 H 0.12 1.80 6.14 -51.93 -0.32 1.49 16 30 H 0.06 0.67 7.93 -51.93 -0.41 0.26 16 31 H 0.15 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.14 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.15 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.14 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.41 2.63 9.10 45.56 0.41 3.04 16 LS Contribution 306.46 15.07 4.62 4.62 Total: -1.00 -36.27 306.46 -7.11 -43.38 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -2.56 Total: 10.22 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 0.00 Total: -10.46 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: -0.21 Total: -33.01 kcal Atomic # 8 Polarization: -53.23 SS G_CDS: -3.36 Total: -56.59 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 26.74 SS G_CDS: -0.57 Total: 26.16 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -36.27 -7.11 -43.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479508.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.837 kcal (2) G-P(sol) polarization free energy of solvation -36.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds