Wall clock time and date at job start Tue Mar 31 2020 03:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46375 * 2 1 4 4 C 1.53000 * 109.47223 * 240.00660 * 2 1 3 5 5 S 1.81395 * 109.47296 * 64.99427 * 4 2 1 6 6 O 1.42105 * 110.54149 * 68.38083 * 5 4 2 7 7 O 1.42102 * 110.54569 * 291.62484 * 5 4 2 8 8 N 1.65606 * 104.44852 * 179.97438 * 5 4 2 9 9 C 1.47586 * 134.48958 * 90.00077 * 8 5 4 10 10 C 1.53949 * 86.11504 * 155.35964 * 9 8 5 11 11 O 1.42903 * 113.74102 * 269.15490 * 10 9 8 12 12 C 1.50694 * 113.74088 * 137.95266 * 10 9 8 13 13 H 1.08000 * 120.00563 * 1.92388 * 12 10 9 14 14 C 1.37885 * 119.99902 * 181.92552 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.47807 * 134.45609 * 269.87090 * 8 5 4 21 21 C 1.50695 * 109.47033 * 120.00138 * 2 1 3 22 22 O 1.20828 * 119.99968 * 120.00549 * 21 2 1 23 23 O 1.34232 * 120.00175 * 300.00191 * 21 2 1 24 24 H 1.08995 * 109.47578 * 299.99646 * 1 2 3 25 25 H 1.08995 * 109.47558 * 60.00323 * 1 2 3 26 26 H 1.09005 * 109.46727 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46555 * 304.99340 * 4 2 1 28 28 H 1.08999 * 109.47164 * 184.99774 * 4 2 1 29 29 H 1.08993 * 113.76952 * 41.05751 * 9 8 5 30 30 H 1.08995 * 113.86700 * 269.67100 * 9 8 5 31 31 H 0.96700 * 113.99800 * 178.07503 * 11 10 9 32 32 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 33 33 H 1.08995 * 113.77163 * 90.38156 * 20 8 5 34 34 H 1.09005 * 113.83876 * 318.91142 * 20 8 5 35 35 H 0.96696 * 117.00072 * 180.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 16 1.5600 0.2158 -2.7266 6 8 2.2659 1.4476 -2.7869 7 8 0.1519 0.1684 -2.9115 8 7 2.1684 -0.6650 -3.9902 9 6 1.6489 -1.7598 -4.8326 10 6 2.6517 -1.2766 -5.8961 11 8 2.1137 -0.3038 -6.7941 12 6 3.3712 -2.3954 -6.6043 13 1 3.1376 -3.4229 -6.3675 14 6 4.3279 -2.1073 -7.5545 15 7 4.6120 -0.8560 -7.8432 16 14 5.2203 -3.4941 -8.4317 17 1 6.1919 -2.9237 -9.3992 18 1 5.9428 -4.3258 -7.4360 19 1 4.2353 -4.3354 -9.1579 20 6 3.4490 -0.6681 -4.7282 21 6 2.0323 -0.7104 1.2304 22 8 2.7270 -1.6928 1.1195 23 8 1.7080 -0.2519 2.4496 24 1 -0.3634 0.5137 0.8899 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6055 -1.7197 -1.2952 28 1 3.1263 -0.7993 -1.2057 29 1 0.6059 -1.6339 -5.1228 30 1 1.8653 -2.7553 -4.4450 31 1 2.7489 0.0240 -7.4454 32 1 5.2853 -0.6534 -8.5114 33 1 4.1963 -1.3414 -4.3086 34 1 3.8405 0.3279 -4.9354 35 1 2.0540 -0.7406 3.2088 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592789058.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:25 Heat of formation + Delta-G solvation = -178.348091 kcal Electronic energy + Delta-G solvation = -22236.961910 eV Core-core repulsion = 18556.705385 eV Total energy + Delta-G solvation = -3680.256525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.086 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.63494 -38.47717 -36.77207 -36.53539 -35.70708 -35.06463 -33.89629 -32.17484 -28.13012 -27.54585 -25.31362 -25.07284 -24.61418 -20.93908 -19.62098 -18.64154 -18.11858 -17.65139 -17.27215 -16.54330 -16.19655 -15.71155 -15.64335 -15.11005 -14.49956 -14.25172 -13.98769 -13.65611 -13.30951 -13.13314 -13.03964 -12.65885 -12.15430 -11.90744 -11.76480 -11.73477 -11.68025 -11.64325 -11.55085 -11.46693 -11.09118 -10.91890 -10.83169 -10.53029 -10.50449 -10.25041 -9.30369 -8.75008 -8.58889 -8.06484 -6.34936 -4.45826 0.47741 1.90371 2.67254 3.01694 3.18323 3.24606 3.26697 3.94068 4.20189 4.23085 4.28048 4.52237 4.63025 4.89691 5.00794 5.18101 5.31664 5.39833 5.46599 5.69688 5.90062 5.98807 6.05703 6.17685 6.27162 6.37807 6.64695 6.78600 7.00040 7.49336 7.58732 7.67327 7.86496 8.56815 9.24794 9.49477 10.71412 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.027464 B = 0.004215 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.283494 B = 6641.009638 C = 7172.683819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.068 4.068 3 H 0.121 0.879 4 C -0.639 4.639 5 S 2.623 3.377 6 O -0.954 6.954 7 O -0.953 6.953 8 N -1.023 6.023 9 C 0.129 3.871 10 C 0.246 3.754 11 O -0.572 6.572 12 C -0.538 4.538 13 H 0.071 0.929 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.907 3.093 17 H -0.285 1.285 18 H -0.274 1.274 19 H -0.274 1.274 20 C 0.102 3.898 21 C 0.490 3.510 22 O -0.507 6.507 23 O -0.514 6.514 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.392 0.608 32 H 0.274 0.726 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.101 0.287 14.836 15.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.088 4.088 3 H 0.139 0.861 4 C -0.764 4.764 5 S 2.716 3.284 6 O -0.945 6.945 7 O -0.944 6.944 8 N -0.864 5.864 9 C 0.004 3.996 10 C 0.202 3.798 11 O -0.383 6.383 12 C -0.578 4.578 13 H 0.089 0.911 14 C -0.131 4.131 15 N -0.536 5.536 16 Si 0.734 3.266 17 H -0.211 1.211 18 H -0.200 1.200 19 H -0.199 1.199 20 C -0.023 4.023 21 C 0.331 3.669 22 O -0.394 6.394 23 O -0.326 6.326 24 H 0.101 0.899 25 H 0.112 0.888 26 H 0.092 0.908 27 H 0.155 0.845 28 H 0.156 0.844 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.247 0.753 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -5.048 1.179 14.856 15.734 hybrid contribution 1.812 -1.569 0.348 2.422 sum -3.236 -0.390 15.204 15.549 Atomic orbital electron populations 1.22267 0.90591 1.04845 1.05652 1.20633 0.99000 1.00685 0.88529 0.86088 1.31038 1.12980 1.15788 1.16595 1.04724 0.74404 0.75045 0.74230 1.93569 1.74944 1.40253 1.85712 1.93541 1.29541 1.87007 1.84265 1.60212 1.29685 1.52006 1.44489 1.23095 0.99975 0.88467 0.88094 1.19833 0.87806 0.86790 0.85374 1.86051 1.43387 1.60155 1.48727 1.21525 1.20826 0.93126 1.22280 0.91074 1.25082 0.95939 0.96155 0.95900 1.69405 1.33382 1.17591 1.33212 0.86406 0.79238 0.81598 0.79327 1.21054 1.19977 1.19896 1.23955 0.85188 1.01438 0.91713 1.23159 0.76786 0.82430 0.84517 1.90737 1.35492 1.25965 1.87186 1.84519 1.72300 1.59021 1.16727 0.89862 0.88829 0.90793 0.84461 0.84370 0.90546 0.89829 0.75345 0.91606 0.90339 0.90790 0.73033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 8.81 37.16 0.33 -1.49 16 2 C -0.07 -0.78 2.83 -91.77 -0.26 -1.04 16 3 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.64 -8.37 4.97 37.16 0.18 -8.18 16 5 S 2.62 44.73 5.58 -107.50 -0.60 44.13 16 6 O -0.95 -18.96 18.02 -57.54 -1.04 -20.00 16 7 O -0.95 -17.70 15.77 -57.54 -0.91 -18.61 16 8 N -1.02 -19.94 4.00 -118.50 -0.47 -20.41 16 9 C 0.13 2.57 8.31 -2.96 -0.02 2.55 16 10 C 0.25 5.82 1.40 -90.84 -0.13 5.70 16 11 O -0.57 -14.71 13.49 -35.23 -0.48 -15.19 16 12 C -0.54 -13.26 8.61 -34.44 -0.30 -13.55 16 13 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 14 C 0.07 1.79 5.40 -17.82 -0.10 1.69 16 15 N -0.90 -22.75 11.20 55.43 0.62 -22.13 16 16 Si 0.91 19.30 29.54 -169.99 -5.02 14.28 16 17 H -0.29 -6.08 7.11 56.52 0.40 -5.67 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 C 0.10 2.21 8.32 -2.84 -0.02 2.18 16 21 C 0.49 5.59 7.63 36.00 0.27 5.87 16 22 O -0.51 -7.32 16.68 -18.75 -0.31 -7.64 16 23 O -0.51 -4.20 13.33 -39.26 -0.52 -4.72 16 24 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 25 H 0.09 1.09 5.61 -51.93 -0.29 0.80 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.14 1.66 8.14 -51.92 -0.42 1.24 16 28 H 0.14 1.76 7.96 -51.92 -0.41 1.35 16 29 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.08 1.44 8.09 -51.93 -0.42 1.02 16 31 H 0.39 10.20 6.60 45.56 0.30 10.50 16 32 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 33 H 0.08 1.56 8.09 -51.93 -0.42 1.14 16 34 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.41 1.58 9.10 45.56 0.41 2.00 16 LS Contribution 315.58 15.07 4.76 4.76 Total: -1.00 -32.11 315.58 -6.92 -39.04 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -2.91 Total: 12.79 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -0.04 Total: -6.29 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.15 Total: -42.55 kcal Atomic # 8 Polarization: -62.90 SS G_CDS: -3.26 Total: -66.15 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Atomic # 16 Polarization: 44.73 SS G_CDS: -0.60 Total: 44.13 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.11 -6.92 -39.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592789058.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.313 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds