Wall clock time and date at job start Tue Mar 31 2020 03:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46375 * 2 1 4 4 C 1.53000 * 109.47223 * 240.00660 * 2 1 3 5 5 S 1.81395 * 109.47296 * 64.99427 * 4 2 1 6 6 O 1.42105 * 110.54149 * 68.38083 * 5 4 2 7 7 O 1.42102 * 110.54569 * 291.62484 * 5 4 2 8 8 N 1.65606 * 104.44852 * 179.97438 * 5 4 2 9 9 C 1.47586 * 134.48958 * 90.00077 * 8 5 4 10 10 C 1.53949 * 86.11504 * 155.35964 * 9 8 5 11 11 O 1.42903 * 113.74102 * 269.15490 * 10 9 8 12 12 C 1.50694 * 113.74088 * 137.95266 * 10 9 8 13 13 H 1.08000 * 120.00563 * 1.92388 * 12 10 9 14 14 C 1.37885 * 119.99902 * 181.92552 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.47807 * 134.45609 * 269.87090 * 8 5 4 21 21 C 1.50695 * 109.47033 * 120.00138 * 2 1 3 22 22 O 1.20828 * 119.99968 * 120.00549 * 21 2 1 23 23 O 1.34232 * 120.00175 * 300.00191 * 21 2 1 24 24 H 1.08995 * 109.47578 * 299.99646 * 1 2 3 25 25 H 1.08995 * 109.47558 * 60.00323 * 1 2 3 26 26 H 1.09005 * 109.46727 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46555 * 304.99340 * 4 2 1 28 28 H 1.08999 * 109.47164 * 184.99774 * 4 2 1 29 29 H 1.08993 * 113.76952 * 41.05751 * 9 8 5 30 30 H 1.08995 * 113.86700 * 269.67100 * 9 8 5 31 31 H 0.96700 * 113.99800 * 178.07503 * 11 10 9 32 32 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 33 33 H 1.08995 * 113.77163 * 90.38156 * 20 8 5 34 34 H 1.09005 * 113.83876 * 318.91142 * 20 8 5 35 35 H 0.96696 * 117.00072 * 180.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 16 1.5600 0.2158 -2.7266 6 8 2.2659 1.4476 -2.7869 7 8 0.1519 0.1684 -2.9115 8 7 2.1684 -0.6650 -3.9902 9 6 1.6489 -1.7598 -4.8326 10 6 2.6517 -1.2766 -5.8961 11 8 2.1137 -0.3038 -6.7941 12 6 3.3712 -2.3954 -6.6043 13 1 3.1376 -3.4229 -6.3675 14 6 4.3279 -2.1073 -7.5545 15 7 4.6120 -0.8560 -7.8432 16 14 5.2203 -3.4941 -8.4317 17 1 6.1919 -2.9237 -9.3992 18 1 5.9428 -4.3258 -7.4360 19 1 4.2353 -4.3354 -9.1579 20 6 3.4490 -0.6681 -4.7282 21 6 2.0323 -0.7104 1.2304 22 8 2.7270 -1.6928 1.1195 23 8 1.7080 -0.2519 2.4496 24 1 -0.3634 0.5137 0.8899 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6055 -1.7197 -1.2952 28 1 3.1263 -0.7993 -1.2057 29 1 0.6059 -1.6339 -5.1228 30 1 1.8653 -2.7553 -4.4450 31 1 2.7489 0.0240 -7.4454 32 1 5.2853 -0.6534 -8.5114 33 1 4.1963 -1.3414 -4.3086 34 1 3.8405 0.3279 -4.9354 35 1 2.0540 -0.7406 3.2088 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592789058.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:25 Heat of formation + Delta-G solvation = -205.772759 kcal Electronic energy + Delta-G solvation = -22238.151132 eV Core-core repulsion = 18556.705385 eV Total energy + Delta-G solvation = -3681.445748 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.086 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.48939 -40.16169 -38.22805 -37.32672 -37.11793 -36.06204 -35.72237 -34.08464 -29.65385 -28.77017 -26.94946 -26.38290 -25.91126 -21.85515 -21.29352 -19.84464 -19.38948 -19.14713 -18.58283 -17.84965 -17.38928 -17.04734 -16.90413 -16.73649 -16.00884 -15.49344 -15.36129 -14.98478 -14.71686 -14.59234 -14.16008 -13.84177 -13.74828 -13.37811 -13.22968 -13.18478 -12.90662 -12.80185 -12.74500 -12.60600 -12.54279 -12.47061 -12.23112 -12.13655 -12.08012 -11.53858 -11.06097 -10.59339 -10.29287 -9.77081 -8.20015 -6.37491 -0.88207 1.05182 1.50182 1.50751 1.54010 1.59952 1.97500 2.43857 2.78936 2.94145 3.05386 3.11403 3.49703 3.66162 3.80791 4.09348 4.28297 4.32087 4.37932 4.50100 4.63212 4.70270 4.74636 4.78394 5.04768 5.06801 5.14623 5.26900 5.50012 5.75415 5.83428 6.02309 6.69489 6.89181 7.35708 7.50954 8.85413 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.027464 B = 0.004215 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.283494 B = 6641.009638 C = 7172.683819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.079 4.079 3 H 0.137 0.863 4 C -0.611 4.611 5 S 2.633 3.367 6 O -0.988 6.988 7 O -0.971 6.971 8 N -1.034 6.034 9 C 0.135 3.865 10 C 0.213 3.787 11 O -0.588 6.588 12 C -0.553 4.553 13 H 0.079 0.921 14 C 0.028 3.972 15 N -0.921 5.921 16 Si 0.968 3.032 17 H -0.287 1.287 18 H -0.267 1.267 19 H -0.273 1.273 20 C 0.108 3.892 21 C 0.503 3.497 22 O -0.541 6.541 23 O -0.502 6.502 24 H 0.107 0.893 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.155 0.845 28 H 0.147 0.853 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.385 0.615 32 H 0.273 0.727 33 H 0.094 0.906 34 H 0.051 0.949 35 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.198 -0.930 16.956 17.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.099 4.099 3 H 0.154 0.846 4 C -0.742 4.742 5 S 2.732 3.268 6 O -0.979 6.979 7 O -0.962 6.962 8 N -0.872 5.872 9 C 0.011 3.989 10 C 0.170 3.830 11 O -0.400 6.400 12 C -0.592 4.592 13 H 0.097 0.903 14 C -0.172 4.172 15 N -0.561 5.561 16 Si 0.794 3.206 17 H -0.213 1.213 18 H -0.192 1.192 19 H -0.198 1.198 20 C -0.018 4.018 21 C 0.344 3.656 22 O -0.431 6.431 23 O -0.316 6.316 24 H 0.125 0.875 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.173 0.827 28 H 0.166 0.834 29 H 0.091 0.909 30 H 0.133 0.867 31 H 0.239 0.761 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.070 0.930 35 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -5.173 -0.018 16.956 17.728 hybrid contribution 1.771 -1.137 -0.149 2.110 sum -3.402 -1.156 16.807 17.186 Atomic orbital electron populations 1.22316 0.89679 1.05502 1.06102 1.20770 0.99871 1.01347 0.87936 0.84559 1.30664 1.13725 1.15551 1.14229 1.04181 0.73487 0.74344 0.74834 1.93528 1.75351 1.42433 1.86585 1.93520 1.30450 1.87143 1.85095 1.60033 1.28606 1.52132 1.46476 1.23098 0.98905 0.89934 0.86999 1.20306 0.89903 0.86685 0.86079 1.86036 1.43786 1.60951 1.49187 1.21842 1.20881 0.93780 1.22703 0.90323 1.25805 0.96712 0.98049 0.96623 1.69501 1.33837 1.19116 1.33685 0.85451 0.77992 0.78989 0.78207 1.21300 1.19181 1.19838 1.23690 0.85971 1.00296 0.91797 1.22886 0.75927 0.81546 0.85196 1.90741 1.37154 1.27430 1.87754 1.84462 1.71766 1.58890 1.16491 0.87464 0.90367 0.90109 0.82728 0.83450 0.90894 0.86728 0.76147 0.91692 0.88748 0.93005 0.70536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 8.81 71.98 0.63 -2.57 16 2 C -0.08 -1.57 2.83 -11.54 -0.03 -1.61 16 3 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 4 C -0.61 -14.51 4.97 71.98 0.36 -14.15 16 5 S 2.63 87.69 5.58 -56.49 -0.32 87.38 16 6 O -0.99 -39.29 18.02 -127.65 -2.30 -41.59 16 7 O -0.97 -35.45 15.77 -127.65 -2.01 -37.47 16 8 N -1.03 -39.80 4.00 -532.66 -2.13 -41.93 16 9 C 0.14 5.31 8.31 86.49 0.72 6.03 16 10 C 0.21 10.18 1.40 -10.88 -0.02 10.16 16 11 O -0.59 -31.25 13.49 -148.98 -2.01 -33.25 16 12 C -0.55 -27.14 8.61 25.60 0.22 -26.92 16 13 H 0.08 3.63 7.81 -2.91 -0.02 3.60 16 14 C 0.03 1.40 5.40 84.66 0.46 1.86 16 15 N -0.92 -47.59 11.20 21.45 0.24 -47.35 16 16 Si 0.97 39.35 29.54 68.60 2.03 41.37 16 17 H -0.29 -11.67 7.11 99.48 0.71 -10.97 16 18 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 20 C 0.11 4.70 8.32 86.45 0.72 5.42 16 21 C 0.50 9.83 7.63 71.23 0.54 10.38 16 22 O -0.54 -14.10 16.68 21.96 0.37 -13.74 16 23 O -0.50 -6.34 13.33 -51.43 -0.69 -7.02 16 24 H 0.11 1.39 8.11 -2.39 -0.02 1.37 16 25 H 0.08 1.68 5.61 -2.39 -0.01 1.67 16 26 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.15 3.25 8.14 -2.39 -0.02 3.23 16 28 H 0.15 3.37 7.96 -2.39 -0.02 3.36 16 29 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.11 3.71 8.09 -2.39 -0.02 3.69 16 31 H 0.38 20.92 6.60 -74.06 -0.49 20.43 16 32 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 33 H 0.09 3.72 8.09 -2.39 -0.02 3.70 16 34 H 0.05 2.43 8.14 -2.38 -0.02 2.41 16 35 H 0.43 1.70 9.10 -74.06 -0.67 1.03 16 Total: -1.00 -69.09 315.58 -3.24 -72.34 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: -0.02 Total: 32.66 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 3.60 Total: -11.40 kcal Atomic # 7 Polarization: -87.39 SS G_CDS: -1.89 Total: -89.28 kcal Atomic # 8 Polarization: -126.43 SS G_CDS: -6.64 Total: -133.07 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.37 kcal Atomic # 16 Polarization: 87.69 SS G_CDS: -0.32 Total: 87.38 kcal Total: -69.09 -3.24 -72.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592789058.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.436 kcal (2) G-P(sol) polarization free energy of solvation -69.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds