Wall clock time and date at job start Tue Mar 31 2020 03:05:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86801 * 120.00152 * 2 1
4 4 H 1.48502 * 109.46798 * 180.02562 * 3 2 1
5 5 H 1.48503 * 109.47088 * 300.00364 * 3 2 1
6 6 H 1.48503 * 109.46841 * 60.00359 * 3 2 1
7 7 C 1.37878 * 119.99678 * 180.02562 * 2 1 3
8 8 H 1.07995 * 119.99781 * 180.02562 * 7 2 1
9 9 C 1.50700 * 120.00193 * 359.97438 * 7 2 1
10 10 C 1.52997 * 109.47506 * 180.02562 * 9 7 2
11 11 S 1.81395 * 109.47538 * 180.02562 * 10 9 7
12 12 O 1.42100 * 110.54350 * 68.37216 * 11 10 9
13 13 O 1.42100 * 110.54176 * 291.62396 * 11 10 9
14 14 N 1.65602 * 104.44888 * 180.02562 * 11 10 9
15 15 C 1.46500 * 120.00113 * 65.00016 * 14 11 10
16 16 H 1.09006 * 110.45578 * 333.84781 * 15 14 11
17 17 C 1.54507 * 110.51115 * 96.44989 * 15 14 11
18 18 C 1.54483 * 104.06211 * 118.78317 * 17 15 14
19 19 O 1.44428 * 104.89902 * 335.96812 * 18 17 15
20 20 C 1.44688 * 105.13885 * 40.49479 * 19 18 17
21 21 H 1.08999 * 110.35366 * 78.36394 * 20 19 18
22 22 C 1.50703 * 110.44641 * 200.63016 * 20 19 18
23 23 O 1.20822 * 119.99810 * 0.46983 * 22 20 19
24 24 O 1.34229 * 119.99951 * 180.47018 * 22 20 19
25 25 H 0.96996 * 119.99767 * 359.97438 * 1 2 3
26 26 H 1.09004 * 109.47007 * 60.00068 * 9 7 2
27 27 H 1.09005 * 109.47045 * 300.00689 * 9 7 2
28 28 H 1.09002 * 109.46794 * 59.99474 * 10 9 7
29 29 H 1.09000 * 109.46687 * 300.00509 * 10 9 7
30 30 H 0.96997 * 119.99531 * 244.99624 * 14 11 10
31 31 H 1.09005 * 110.51421 * 0.13889 * 17 15 14
32 32 H 1.09001 * 110.51335 * 237.42800 * 17 15 14
33 33 H 1.09002 * 110.37322 * 94.85326 * 18 17 15
34 34 H 1.08999 * 110.37312 * 217.08002 * 18 17 15
35 35 H 0.96696 * 116.99793 * 179.97438 * 24 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3462 -0.0006
5 1 1.8904 2.3965 -1.2125
6 1 1.8905 2.3963 1.2126
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0001
9 6 1.2510 -2.4992 -0.0005
10 6 2.2451 -3.6622 -0.0005
11 16 1.3381 -5.2331 -0.0013
12 8 0.6645 -5.4193 -1.2385
13 8 0.6637 -5.4200 1.2354
14 7 2.5203 -6.3928 -0.0005
15 6 3.4178 -6.5231 1.1500
16 1 3.5057 -5.5714 1.6743
17 6 2.9129 -7.6247 2.1085
18 6 4.0583 -8.6612 2.1256
19 8 4.7605 -8.4593 0.8797
20 6 4.8085 -7.0242 0.7013
21 1 5.5883 -6.5903 1.3271
22 6 5.0476 -6.6814 -0.7466
23 8 5.1599 -7.5627 -1.5654
24 8 5.1359 -5.3971 -1.1265
25 1 -0.4849 0.8400 0.0004
26 1 0.6240 -2.5567 -0.8903
27 1 0.6246 -2.5570 0.8897
28 1 2.8718 -3.6044 0.8894
29 1 2.8718 -3.6044 -0.8905
30 1 2.6183 -6.9858 -0.7618
31 1 1.9968 -8.0741 1.7252
32 1 2.7512 -7.2178 3.1067
33 1 4.7231 -8.4783 2.9698
34 1 3.6543 -9.6724 2.1739
35 1 5.2903 -5.2267 -2.0657
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001601067573.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:05:03
Heat of formation + Delta-G solvation = -209.467555 kcal
Electronic energy + Delta-G solvation = -22505.989108 eV
Core-core repulsion = 18824.383142 eV
Total energy + Delta-G solvation = -3681.605966 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 293.086 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.98387 -39.20282 -36.67589 -36.28322 -35.54506 -34.97217 -33.93748 -31.21125
-30.92068 -29.58893 -25.65243 -24.52925 -22.04644 -21.73356 -21.36328 -19.33597
-18.27806 -17.87898 -17.52127 -16.78647 -16.20357 -16.13304 -15.78847 -15.42392
-15.15143 -14.92234 -14.58657 -14.54891 -13.45767 -13.36099 -13.13945 -12.57626
-12.43596 -12.07315 -11.81766 -11.71648 -11.67932 -11.61352 -11.56052 -11.29650
-11.12244 -11.00085 -10.78921 -10.47524 -10.42581 -10.32410 -9.88210 -9.60621
-9.11612 -8.53977 -6.15864 -4.21470 0.67567 1.90847 2.37582 2.95528
3.22884 3.30502 3.33451 3.63716 3.98978 4.25156 4.35378 4.37831
4.54629 4.61925 4.71456 4.78985 4.90835 5.00004 5.19701 5.33976
5.39337 5.59078 5.60163 5.76470 5.88156 6.23910 6.28975 6.44148
6.82944 7.26042 7.31252 7.67165 7.77542 8.13553 8.82479 9.43662
10.95241
Molecular weight = 293.09amu
Principal moments of inertia in cm(-1)
A = 0.021050 B = 0.004709 C = 0.004345
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1329.817490 B = 5944.546066 C = 6443.227095
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.890 5.890
2 C 0.058 3.942
3 Si 0.900 3.100
4 H -0.272 1.272
5 H -0.282 1.282
6 H -0.282 1.282
7 C -0.519 4.519
8 H 0.063 0.937
9 C 0.027 3.973
10 C -0.584 4.584
11 S 2.587 3.413
12 O -0.964 6.964
13 O -0.962 6.962
14 N -1.122 6.122
15 C 0.137 3.863
16 H 0.118 0.882
17 C -0.170 4.170
18 C 0.043 3.957
19 O -0.345 6.345
20 C 0.076 3.924
21 H 0.122 0.878
22 C 0.490 3.510
23 O -0.496 6.496
24 O -0.504 6.504
25 H 0.265 0.735
26 H 0.033 0.967
27 H 0.033 0.967
28 H 0.119 0.881
29 H 0.125 0.875
30 H 0.414 0.586
31 H 0.094 0.906
32 H 0.097 0.903
33 H 0.070 0.930
34 H 0.102 0.898
35 H 0.419 0.581
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.885 -13.812 4.063 18.049
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.529 5.529
2 C -0.145 4.145
3 Si 0.727 3.273
4 H -0.196 1.196
5 H -0.208 1.208
6 H -0.208 1.208
7 C -0.558 4.558
8 H 0.081 0.919
9 C -0.012 4.012
10 C -0.717 4.717
11 S 2.685 3.315
12 O -0.954 6.954
13 O -0.952 6.952
14 N -0.878 5.878
15 C 0.028 3.972
16 H 0.136 0.864
17 C -0.209 4.209
18 C -0.034 4.034
19 O -0.263 6.263
20 C 0.016 3.984
21 H 0.140 0.860
22 C 0.330 3.670
23 O -0.383 6.383
24 O -0.317 6.317
25 H 0.074 0.926
26 H 0.051 0.949
27 H 0.052 0.948
28 H 0.138 0.862
29 H 0.143 0.857
30 H 0.248 0.752
31 H 0.113 0.887
32 H 0.116 0.884
33 H 0.088 0.912
34 H 0.120 0.880
35 H 0.279 0.721
Dipole moment (debyes) X Y Z Total
from point charges 9.809 -14.295 4.255 17.851
hybrid contribution 1.115 1.205 -0.819 1.835
sum 10.924 -13.090 3.436 17.392
Atomic orbital electron populations
1.69965 1.06139 1.27121 1.49632 1.25072 0.94954 0.99564 0.94902
0.86418 0.79929 0.83182 0.77768 1.19618 1.20827 1.20816 1.21029
0.93124 0.89635 1.52042 0.91873 1.18979 0.92691 0.90596 0.98893
1.30412 1.13553 1.17353 1.10424 1.05843 0.74680 0.76675 0.74321
1.93568 1.71385 1.85301 1.45143 1.93551 1.71157 1.84979 1.45508
1.56107 1.52600 1.52449 1.26631 1.21991 0.87238 1.01052 0.86935
0.86421 1.23541 1.00205 0.96011 1.01152 1.23590 0.92718 1.00820
0.86229 1.89326 1.77707 1.18221 1.41067 1.22764 0.99340 0.85165
0.91179 0.86029 1.22570 0.72744 0.80684 0.91012 1.90764 1.44800
1.48955 1.53745 1.84491 1.83874 1.27988 1.35362 0.92568 0.94878
0.94847 0.86232 0.85673 0.75200 0.88731 0.88411 0.91201 0.88027
0.72130
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16
2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16
3 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16
4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16
5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16
7 C -0.52 -13.81 9.11 -34.44 -0.31 -14.13 16
8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16
9 C 0.03 0.67 4.98 -27.88 -0.14 0.54 16
10 C -0.58 -10.38 5.91 37.16 0.22 -10.16 16
11 S 2.59 43.99 5.40 -107.50 -0.58 43.41 16
12 O -0.96 -19.71 18.08 -57.54 -1.04 -20.75 16
13 O -0.96 -18.56 17.81 -57.54 -1.02 -19.59 16
14 N -1.12 -14.25 4.62 -3.56 -0.02 -14.27 16
15 C 0.14 1.39 3.39 -66.36 -0.22 1.17 16
16 H 0.12 0.99 7.24 -51.93 -0.38 0.62 16
17 C -0.17 -1.52 6.88 -25.16 -0.17 -1.70 16
18 C 0.04 0.33 7.62 37.94 0.29 0.62 16
19 O -0.34 -3.78 10.94 -54.42 -0.60 -4.37 16
20 C 0.08 0.73 3.78 -27.11 -0.10 0.63 16
21 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16
22 C 0.49 5.55 5.98 36.01 0.22 5.77 16
23 O -0.50 -7.25 17.31 -25.26 -0.44 -7.69 16
24 O -0.50 -4.68 13.42 -39.25 -0.53 -5.21 16
25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16
26 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16
27 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16
28 H 0.12 1.82 7.47 -51.92 -0.39 1.44 16
29 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16
30 H 0.41 5.16 7.86 -34.47 -0.27 4.89 16
31 H 0.09 0.97 7.97 -51.93 -0.41 0.56 16
32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16
33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16
34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16
35 H 0.42 2.42 9.10 45.56 0.41 2.83 16
LS Contribution 317.53 15.07 4.79 4.79
Total: -1.00 -37.41 317.53 -7.58 -44.99
By element:
Atomic # 1 Polarization: 7.57 SS G_CDS: -3.53 Total: 4.04 kcal
Atomic # 6 Polarization: -15.45 SS G_CDS: -0.33 Total: -15.78 kcal
Atomic # 7 Polarization: -40.20 SS G_CDS: 0.72 Total: -39.48 kcal
Atomic # 8 Polarization: -53.98 SS G_CDS: -3.62 Total: -57.61 kcal
Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal
Atomic # 16 Polarization: 43.99 SS G_CDS: -0.58 Total: 43.41 kcal
Total LS contribution 4.79 Total: 4.79 kcal
Total: -37.41 -7.58 -44.99 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001601067573.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -164.474 kcal
(2) G-P(sol) polarization free energy of solvation -37.412 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.886 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.994 kcal
(6) G-S(sol) free energy of system = (1) + (5) -209.468 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds