Wall clock time and date at job start Tue Mar 31 2020 03:05:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86801 * 120.00152 * 2 1
4 4 H 1.48502 * 109.46798 * 180.02562 * 3 2 1
5 5 H 1.48503 * 109.47088 * 300.00364 * 3 2 1
6 6 H 1.48503 * 109.46841 * 60.00359 * 3 2 1
7 7 C 1.37878 * 119.99678 * 180.02562 * 2 1 3
8 8 H 1.07995 * 119.99781 * 180.02562 * 7 2 1
9 9 C 1.50700 * 120.00193 * 359.97438 * 7 2 1
10 10 C 1.52997 * 109.47506 * 180.02562 * 9 7 2
11 11 S 1.81395 * 109.47538 * 180.02562 * 10 9 7
12 12 O 1.42100 * 110.54350 * 68.37216 * 11 10 9
13 13 O 1.42100 * 110.54176 * 291.62396 * 11 10 9
14 14 N 1.65602 * 104.44888 * 180.02562 * 11 10 9
15 15 C 1.46500 * 120.00113 * 65.00016 * 14 11 10
16 16 H 1.09006 * 110.45578 * 333.84781 * 15 14 11
17 17 C 1.54507 * 110.51115 * 96.44989 * 15 14 11
18 18 C 1.54483 * 104.06211 * 118.78317 * 17 15 14
19 19 O 1.44428 * 104.89902 * 335.96812 * 18 17 15
20 20 C 1.44688 * 105.13885 * 40.49479 * 19 18 17
21 21 H 1.08999 * 110.35366 * 78.36394 * 20 19 18
22 22 C 1.50703 * 110.44641 * 200.63016 * 20 19 18
23 23 O 1.20822 * 119.99810 * 0.46983 * 22 20 19
24 24 O 1.34229 * 119.99951 * 180.47018 * 22 20 19
25 25 H 0.96996 * 119.99767 * 359.97438 * 1 2 3
26 26 H 1.09004 * 109.47007 * 60.00068 * 9 7 2
27 27 H 1.09005 * 109.47045 * 300.00689 * 9 7 2
28 28 H 1.09002 * 109.46794 * 59.99474 * 10 9 7
29 29 H 1.09000 * 109.46687 * 300.00509 * 10 9 7
30 30 H 0.96997 * 119.99531 * 244.99624 * 14 11 10
31 31 H 1.09005 * 110.51421 * 0.13889 * 17 15 14
32 32 H 1.09001 * 110.51335 * 237.42800 * 17 15 14
33 33 H 1.09002 * 110.37322 * 94.85326 * 18 17 15
34 34 H 1.08999 * 110.37312 * 217.08002 * 18 17 15
35 35 H 0.96696 * 116.99793 * 179.97438 * 24 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3462 -0.0006
5 1 1.8904 2.3965 -1.2125
6 1 1.8905 2.3963 1.2126
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0001
9 6 1.2510 -2.4992 -0.0005
10 6 2.2451 -3.6622 -0.0005
11 16 1.3381 -5.2331 -0.0013
12 8 0.6645 -5.4193 -1.2385
13 8 0.6637 -5.4200 1.2354
14 7 2.5203 -6.3928 -0.0005
15 6 3.4178 -6.5231 1.1500
16 1 3.5057 -5.5714 1.6743
17 6 2.9129 -7.6247 2.1085
18 6 4.0583 -8.6612 2.1256
19 8 4.7605 -8.4593 0.8797
20 6 4.8085 -7.0242 0.7013
21 1 5.5883 -6.5903 1.3271
22 6 5.0476 -6.6814 -0.7466
23 8 5.1599 -7.5627 -1.5654
24 8 5.1359 -5.3971 -1.1265
25 1 -0.4849 0.8400 0.0004
26 1 0.6240 -2.5567 -0.8903
27 1 0.6246 -2.5570 0.8897
28 1 2.8718 -3.6044 0.8894
29 1 2.8718 -3.6044 -0.8905
30 1 2.6183 -6.9858 -0.7618
31 1 1.9968 -8.0741 1.7252
32 1 2.7512 -7.2178 3.1067
33 1 4.7231 -8.4783 2.9698
34 1 3.6543 -9.6724 2.1739
35 1 5.2903 -5.2267 -2.0657
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001601067573.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:05:03
Heat of formation + Delta-G solvation = -241.033422 kcal
Electronic energy + Delta-G solvation = -22507.357907 eV
Core-core repulsion = 18824.383142 eV
Total energy + Delta-G solvation = -3682.974765 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 293.086 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-41.78312 -39.97475 -38.17390 -37.13589 -37.03497 -35.90987 -35.85814 -33.09382
-31.65444 -30.40975 -27.56283 -25.26962 -23.59815 -22.72509 -22.16088 -20.55644
-19.27403 -19.10980 -18.54803 -18.29408 -17.32818 -17.07357 -17.03769 -16.48794
-16.45319 -16.31272 -15.75508 -15.42216 -15.00967 -14.45812 -14.11858 -14.04112
-13.69252 -13.44119 -13.22133 -13.13783 -12.94492 -12.81211 -12.73489 -12.59147
-12.35402 -12.21983 -12.18539 -12.06311 -11.69702 -11.61381 -11.25766 -10.93850
-10.62084 -10.46627 -8.22615 -6.35741 -0.72664 1.06742 1.44419 1.44918
1.57877 1.64559 1.79068 2.41083 2.76089 2.93996 3.11846 3.23341
3.38328 3.73546 3.87139 3.90314 4.10907 4.16519 4.18251 4.26489
4.33095 4.67719 4.81903 4.86437 4.96668 5.17041 5.31159 5.34138
5.53048 5.63876 5.73104 5.80429 6.10091 6.79051 6.93398 7.34696
8.89940
Molecular weight = 293.09amu
Principal moments of inertia in cm(-1)
A = 0.021050 B = 0.004709 C = 0.004345
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1329.817490 B = 5944.546066 C = 6443.227095
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.937 5.937
2 C -0.004 4.004
3 Si 0.972 3.028
4 H -0.253 1.253
5 H -0.283 1.283
6 H -0.280 1.280
7 C -0.532 4.532
8 H 0.080 0.920
9 C 0.019 3.981
10 C -0.578 4.578
11 S 2.613 3.387
12 O -1.003 7.003
13 O -0.986 6.986
14 N -1.109 6.109
15 C 0.122 3.878
16 H 0.141 0.859
17 C -0.172 4.172
18 C 0.044 3.956
19 O -0.372 6.372
20 C 0.079 3.921
21 H 0.162 0.838
22 C 0.490 3.510
23 O -0.537 6.537
24 O -0.500 6.500
25 H 0.266 0.734
26 H 0.002 0.998
27 H 0.009 0.991
28 H 0.152 0.848
29 H 0.146 0.854
30 H 0.417 0.583
31 H 0.075 0.925
32 H 0.116 0.884
33 H 0.100 0.900
34 H 0.108 0.892
35 H 0.432 0.568
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.430 -13.616 5.234 19.828
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.577 5.577
2 C -0.202 4.202
3 Si 0.796 3.204
4 H -0.176 1.176
5 H -0.209 1.209
6 H -0.206 1.206
7 C -0.571 4.571
8 H 0.099 0.901
9 C -0.020 4.020
10 C -0.711 4.711
11 S 2.711 3.289
12 O -0.994 6.994
13 O -0.976 6.976
14 N -0.868 5.868
15 C 0.014 3.986
16 H 0.159 0.841
17 C -0.212 4.212
18 C -0.031 4.031
19 O -0.291 6.291
20 C 0.018 3.982
21 H 0.179 0.821
22 C 0.332 3.668
23 O -0.427 6.427
24 O -0.314 6.314
25 H 0.075 0.925
26 H 0.021 0.979
27 H 0.027 0.973
28 H 0.170 0.830
29 H 0.164 0.836
30 H 0.252 0.748
31 H 0.094 0.906
32 H 0.134 0.866
33 H 0.118 0.882
34 H 0.126 0.874
35 H 0.295 0.705
Dipole moment (debyes) X Y Z Total
from point charges 12.368 -14.088 5.430 19.517
hybrid contribution 0.334 1.082 -1.172 1.630
sum 12.702 -13.006 4.258 18.671
Atomic orbital electron populations
1.70113 1.08132 1.28140 1.51275 1.26093 0.95758 1.03823 0.94572
0.85293 0.79374 0.78193 0.77545 1.17607 1.20854 1.20569 1.21552
0.94138 0.90490 1.50876 0.90147 1.18839 0.93642 0.93150 0.96335
1.30272 1.12546 1.15176 1.13134 1.04772 0.74617 0.76619 0.72876
1.93510 1.73058 1.85941 1.46851 1.93516 1.72275 1.85411 1.46359
1.55660 1.52403 1.50885 1.27804 1.22456 0.87114 1.02833 0.86182
0.84115 1.23577 0.99970 0.96036 1.01587 1.23771 0.92539 1.00777
0.86049 1.89311 1.78132 1.19017 1.42667 1.23001 0.99758 0.84906
0.90509 0.82111 1.23017 0.71563 0.80636 0.91553 1.90752 1.46857
1.50104 1.54978 1.84465 1.83271 1.26911 1.36779 0.92546 0.97945
0.97292 0.83005 0.83569 0.74814 0.90584 0.86609 0.88189 0.87425
0.70522
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -55.72 13.29 21.45 0.28 -55.44 16
2 C 0.00 -0.24 5.46 84.65 0.46 0.23 16
3 Si 0.97 41.79 29.54 68.60 2.03 43.82 16
4 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16
5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16
6 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16
7 C -0.53 -27.92 9.11 25.60 0.23 -27.69 16
8 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16
9 C 0.02 0.96 4.98 29.85 0.15 1.11 16
10 C -0.58 -19.68 5.91 71.98 0.43 -19.25 16
11 S 2.61 87.56 5.40 -56.49 -0.31 87.26 16
12 O -1.00 -41.67 18.08 -127.65 -2.31 -43.98 16
13 O -0.99 -37.69 17.81 -127.65 -2.27 -39.97 16
14 N -1.11 -26.51 4.62 -165.17 -0.76 -27.27 16
15 C 0.12 2.13 3.39 46.01 0.16 2.29 16
16 H 0.14 1.81 7.24 -2.38 -0.02 1.79 16
17 C -0.17 -2.68 6.88 31.61 0.22 -2.46 16
18 C 0.04 0.55 7.62 72.49 0.55 1.10 16
19 O -0.37 -7.29 10.94 -130.63 -1.43 -8.72 16
20 C 0.08 1.27 3.78 30.35 0.11 1.39 16
21 H 0.16 1.34 8.14 -2.39 -0.02 1.32 16
22 C 0.49 10.11 5.98 71.24 0.43 10.54 16
23 O -0.54 -15.25 17.31 28.20 0.49 -14.76 16
24 O -0.50 -7.97 13.42 -51.40 -0.69 -8.66 16
25 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16
26 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16
27 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16
28 H 0.15 4.14 7.47 -2.39 -0.02 4.12 16
29 H 0.15 4.34 8.14 -2.39 -0.02 4.32 16
30 H 0.42 10.02 7.86 -96.75 -0.76 9.26 16
31 H 0.08 1.48 7.97 -2.38 -0.02 1.46 16
32 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16
33 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16
34 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16
35 H 0.43 4.10 9.10 -74.06 -0.67 3.42 16
Total: -1.00 -82.45 317.53 -2.53 -84.99
By element:
Atomic # 1 Polarization: 15.78 SS G_CDS: -0.30 Total: 15.49 kcal
Atomic # 6 Polarization: -35.49 SS G_CDS: 2.74 Total: -32.75 kcal
Atomic # 7 Polarization: -82.23 SS G_CDS: -0.48 Total: -82.71 kcal
Atomic # 8 Polarization: -109.88 SS G_CDS: -6.21 Total: -116.09 kcal
Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal
Atomic # 16 Polarization: 87.56 SS G_CDS: -0.31 Total: 87.26 kcal
Total: -82.45 -2.53 -84.99 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001601067573.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -156.047 kcal
(2) G-P(sol) polarization free energy of solvation -82.455 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.502 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.532 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.986 kcal
(6) G-S(sol) free energy of system = (1) + (5) -241.033 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds