Wall clock time and date at job start Tue Mar 31 2020 03:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 N 1.34181 * 125.67662 * 252.81385 * 3 2 1 5 5 C 1.30518 * 109.80047 * 180.02562 * 4 3 2 6 6 N 1.34691 * 108.34700 * 0.02562 * 5 4 3 7 7 C 1.46504 * 126.73629 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47357 * 124.99910 * 7 6 5 9 9 O 1.21296 * 119.99748 * 5.18114 * 8 7 6 10 10 N 1.34774 * 120.00236 * 185.17315 * 8 7 6 11 11 C 1.37097 * 119.99866 * 5.35807 * 10 8 7 12 12 H 1.07998 * 119.99874 * 322.76131 * 11 10 8 13 13 C 1.38952 * 119.99986 * 142.75940 * 11 10 8 14 14 N 1.31414 * 120.00098 * 339.89889 * 13 11 10 15 15 Si 1.86802 * 119.99987 * 159.89192 * 13 11 10 16 16 H 1.48494 * 109.46967 * 90.00142 * 15 13 11 17 17 H 1.48499 * 109.47198 * 210.00291 * 15 13 11 18 18 H 1.48503 * 109.47271 * 330.00525 * 15 13 11 19 19 C 1.46499 * 119.99930 * 185.35319 * 10 8 7 20 20 C 1.53001 * 109.46948 * 90.00485 * 19 10 8 21 21 C 1.50702 * 109.47346 * 179.97438 * 20 19 10 22 22 O 1.20823 * 119.99609 * 0.02562 * 21 20 19 23 23 O 1.34225 * 120.00087 * 179.97438 * 21 20 19 24 24 N 1.31720 * 125.67438 * 72.52059 * 3 2 1 25 25 H 1.08002 * 125.82788 * 180.02562 * 5 4 3 26 26 H 1.08998 * 109.47534 * 245.00527 * 7 6 5 27 27 H 1.09005 * 109.46906 * 5.00300 * 7 6 5 28 28 H 0.96998 * 120.00078 * 185.23451 * 14 13 11 29 29 H 1.08997 * 109.47173 * 210.00356 * 19 10 8 30 30 H 1.08995 * 109.47236 * 330.00784 * 19 10 8 31 31 H 1.09006 * 109.47042 * 299.99761 * 20 19 10 32 32 H 1.09005 * 109.47422 * 59.99987 * 20 19 10 33 33 H 0.96698 * 116.99902 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3504 0.3231 1.0413 5 6 4.6058 0.2186 0.7001 6 7 4.6641 -0.1780 -0.5858 7 6 5.8749 -0.4199 -1.3742 8 6 5.8327 -1.8140 -1.9449 9 8 4.8444 -2.5011 -1.7948 10 7 6.8930 -2.2974 -2.6221 11 6 8.0496 -1.5652 -2.6981 12 1 8.0030 -0.4903 -2.7922 13 6 9.2817 -2.2060 -2.6541 14 7 9.3744 -3.4184 -2.1557 15 14 10.8065 -1.3441 -3.3036 16 1 11.4461 -0.5756 -2.2057 17 1 11.7628 -2.3545 -3.8230 18 1 10.4226 -0.4171 -4.3984 19 6 6.8096 -3.6053 -3.2769 20 6 6.3005 -3.4272 -4.7087 21 6 6.2153 -4.7725 -5.3825 22 8 6.5291 -5.7712 -4.7792 23 8 5.7899 -4.8613 -6.6524 24 7 3.3363 -0.3204 -1.0206 25 1 5.4534 0.4165 1.3396 26 1 5.9298 0.3040 -2.1872 27 1 6.7516 -0.3154 -0.7349 28 1 10.2439 -3.8362 -2.0548 29 1 7.7976 -4.0651 -3.2971 30 1 6.1222 -4.2453 -2.7238 31 1 5.3124 -2.9674 -4.6884 32 1 6.9879 -2.7871 -5.2618 33 1 5.7518 -5.7456 -7.0418 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070297.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:32 Heat of formation + Delta-G solvation = 12.240899 kcal Electronic energy + Delta-G solvation = -22673.277282 eV Core-core repulsion = 18930.426866 eV Total energy + Delta-G solvation = -3742.850415 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.096 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.09041 -39.92918 -38.81851 -36.60133 -35.92031 -35.26602 -33.75855 -32.18253 -31.42067 -30.93159 -28.08255 -25.46481 -24.49801 -23.40932 -22.11839 -20.64046 -19.48895 -18.58240 -17.93540 -17.38203 -16.64047 -16.21795 -15.82034 -15.64168 -15.41882 -15.04947 -14.74558 -14.42829 -14.03422 -13.45364 -13.28167 -12.96569 -12.90215 -12.86133 -12.65775 -12.40037 -11.96318 -11.66552 -11.41304 -11.24689 -11.17988 -11.01602 -10.62913 -10.29401 -10.20457 -10.13428 -9.91969 -9.75992 -9.41582 -8.74219 -7.86142 -6.66400 -4.42967 1.28713 2.08894 2.24776 2.56334 2.57857 2.90808 3.05010 3.06471 3.25270 3.43327 3.52854 3.59886 3.86750 4.31093 4.65062 4.67321 4.91892 5.42249 5.49693 5.52928 5.61577 5.72250 5.92478 5.94561 6.15363 6.19224 6.63896 6.74389 6.76187 7.05116 7.23433 7.32305 7.56949 7.90635 8.00228 8.21689 8.73515 9.08397 9.53286 10.34244 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.013285 B = 0.004931 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.070350 B = 5677.103991 C = 7364.585476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C 0.323 3.677 3 C 0.269 3.731 4 N -0.518 5.518 5 C 0.266 3.734 6 N -0.339 5.339 7 C 0.120 3.880 8 C 0.457 3.543 9 O -0.574 6.574 10 N -0.430 5.430 11 C -0.368 4.368 12 H 0.094 0.906 13 C 0.052 3.948 14 N -0.846 5.846 15 Si 0.916 3.084 16 H -0.274 1.274 17 H -0.280 1.280 18 H -0.266 1.266 19 C 0.125 3.875 20 C -0.125 4.125 21 C 0.483 3.517 22 O -0.514 6.514 23 O -0.524 6.524 24 N -0.218 5.218 25 H 0.231 0.769 26 H 0.114 0.886 27 H 0.137 0.863 28 H 0.276 0.724 29 H 0.120 0.880 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.780 5.619 -1.979 6.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.062 5.062 2 C 0.004 3.996 3 C -0.013 4.013 4 N -0.246 5.246 5 C -0.030 4.030 6 N -0.131 5.131 7 C -0.004 4.004 8 C 0.244 3.756 9 O -0.458 6.458 10 N -0.149 5.149 11 C -0.495 4.495 12 H 0.112 0.888 13 C -0.157 4.157 14 N -0.480 5.480 15 Si 0.741 3.259 16 H -0.199 1.199 17 H -0.206 1.206 18 H -0.190 1.190 19 C 0.001 3.999 20 C -0.164 4.164 21 C 0.325 3.675 22 O -0.401 6.401 23 O -0.336 6.336 24 N -0.051 5.051 25 H 0.247 0.753 26 H 0.132 0.868 27 H 0.155 0.845 28 H 0.087 0.913 29 H 0.137 0.863 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -1.434 5.057 -2.001 5.624 hybrid contribution 1.819 -0.294 -0.574 1.930 sum 0.386 4.763 -2.576 5.428 Atomic orbital electron populations 1.81246 1.10468 1.07698 1.06752 1.22949 0.89171 0.93791 0.93727 1.18140 0.88469 1.04650 0.90002 1.70481 1.00515 1.25175 1.28433 1.26092 0.96359 0.95610 0.84984 1.50337 1.05309 1.46975 1.10482 1.21814 0.81912 0.99071 0.97622 1.20139 0.85581 0.88308 0.81610 1.90678 1.34120 1.59530 1.61425 1.43285 1.10983 1.17352 1.43310 1.19425 0.82627 0.92060 1.55343 0.88806 1.25444 0.99551 0.95799 0.94879 1.69819 1.26188 1.14446 1.37554 0.86114 0.80839 0.79251 0.79694 1.19910 1.20552 1.19023 1.21240 1.04852 0.86249 0.87517 1.21831 1.04707 0.91068 0.98753 1.23716 0.72122 0.92718 0.78932 1.90711 1.45401 1.39112 1.64894 1.84581 1.79926 1.39245 1.29816 1.78632 0.87516 1.18359 1.20611 0.75297 0.86790 0.84538 0.91283 0.86285 0.91317 0.88501 0.87601 0.74006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -6.34 18.54 41.84 0.78 -5.56 16 2 C 0.32 5.23 16.01 -22.47 -0.36 4.87 16 3 C 0.27 4.43 7.82 -158.51 -1.24 3.19 16 4 N -0.52 -7.75 11.22 -13.79 -0.15 -7.90 16 5 C 0.27 3.31 12.61 -90.68 -1.14 2.17 16 6 N -0.34 -5.18 3.46 -63.82 -0.22 -5.40 16 7 C 0.12 1.77 5.65 -5.19 -0.03 1.74 16 8 C 0.46 9.26 7.67 -10.99 -0.08 9.18 16 9 O -0.57 -13.66 15.19 5.54 0.08 -13.57 16 10 N -0.43 -9.05 2.52 -114.82 -0.29 -9.34 16 11 C -0.37 -7.48 8.53 -14.93 -0.13 -7.60 16 12 H 0.09 1.69 7.22 -52.49 -0.38 1.31 16 13 C 0.05 1.11 4.99 -17.47 -0.09 1.03 16 14 N -0.85 -19.82 11.35 55.50 0.63 -19.19 16 15 Si 0.92 16.47 29.60 -169.99 -5.03 11.43 16 16 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 17 H -0.28 -5.27 7.11 56.52 0.40 -4.86 16 18 H -0.27 -4.67 7.11 56.52 0.40 -4.27 16 19 C 0.13 2.71 4.33 -4.04 -0.02 2.69 16 20 C -0.12 -2.24 6.13 -27.88 -0.17 -2.41 16 21 C 0.48 8.37 8.33 36.01 0.30 8.67 16 22 O -0.51 -10.50 16.74 -18.75 -0.31 -10.81 16 23 O -0.52 -7.09 13.42 -39.24 -0.53 -7.61 16 24 N -0.22 -3.89 11.74 30.96 0.36 -3.53 16 25 H 0.23 1.59 8.06 -52.49 -0.42 1.16 16 26 H 0.11 1.46 8.03 -51.93 -0.42 1.04 16 27 H 0.14 1.65 7.81 -51.93 -0.41 1.25 16 28 H 0.28 6.19 8.32 -40.82 -0.34 5.85 16 29 H 0.12 2.83 5.40 -51.93 -0.28 2.55 16 30 H 0.07 1.64 7.31 -51.93 -0.38 1.26 16 31 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 32 H 0.11 1.78 8.14 -51.93 -0.42 1.35 16 33 H 0.40 3.54 9.10 45.56 0.41 3.96 16 LS Contribution 314.70 15.07 4.74 4.74 Total: -1.00 -31.06 314.70 -4.75 -35.81 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -1.85 Total: 7.41 kcal Atomic # 6 Polarization: 26.49 SS G_CDS: -2.96 Total: 23.53 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 1.10 Total: -50.92 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.76 Total: -32.00 kcal Atomic # 14 Polarization: 16.47 SS G_CDS: -5.03 Total: 11.43 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.06 -4.75 -35.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070297.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.047 kcal (2) G-P(sol) polarization free energy of solvation -31.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds