Wall clock time and date at job start Tue Mar 31 2020 03:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00439 * 2 1 4 4 H 1.48501 * 109.47271 * 270.00285 * 3 2 1 5 5 H 1.48501 * 109.46659 * 30.00292 * 3 2 1 6 6 H 1.48500 * 109.47068 * 149.99827 * 3 2 1 7 7 C 1.38820 * 119.99567 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99567 * 202.12224 * 7 2 1 9 9 N 1.36936 * 119.99911 * 22.11620 * 7 2 1 10 10 C 1.46506 * 120.00179 * 16.23960 * 9 7 2 11 11 C 1.50696 * 109.46672 * 263.99722 * 10 9 7 12 12 O 1.20824 * 120.00801 * 0.02562 * 11 10 9 13 13 O 1.34231 * 119.99737 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99876 * 196.23408 * 9 7 2 15 15 C 1.50699 * 109.47373 * 270.00345 * 14 9 7 16 16 N 1.31253 * 126.19844 * 90.02300 * 15 14 9 17 17 N 1.28810 * 110.03848 * 179.97438 * 16 15 14 18 18 C 1.31387 * 109.25759 * 359.97438 * 17 16 15 19 19 C 1.46897 * 134.26619 * 180.02562 * 18 17 16 20 20 O 1.21738 * 120.78156 * 0.02665 * 19 18 17 21 21 N 1.35149 * 118.42907 * 180.02562 * 19 18 17 22 22 H 0.96999 * 119.85514 * 180.02562 * 21 19 18 23 23 C 1.38151 * 120.29273 * 0.02562 * 21 19 18 24 24 C 1.32820 * 121.84349 * 0.02562 * 23 21 19 25 25 N 1.34470 * 126.19730 * 269.98341 * 15 14 9 26 26 H 0.97007 * 119.99662 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46687 * 23.99619 * 10 9 7 28 28 H 1.08992 * 109.46808 * 143.99898 * 10 9 7 29 29 H 0.96702 * 116.99969 * 180.02562 * 13 11 10 30 30 H 1.09002 * 109.46792 * 150.00002 * 14 9 7 31 31 H 1.09001 * 109.46786 * 30.00422 * 14 9 7 32 32 H 1.07998 * 119.08013 * 180.02562 * 23 21 19 33 33 H 1.07995 * 119.45887 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2023 -0.0005 8 1 3.0306 -1.2369 0.3517 9 7 1.4010 -2.3443 -0.4475 10 6 0.1747 -2.2566 -1.2443 11 6 -1.0221 -2.4258 -0.3444 12 8 -0.8669 -2.6011 0.8409 13 8 -2.2608 -2.3818 -0.8597 14 6 1.9756 -3.6537 -0.1290 15 6 2.9488 -4.0514 -1.2087 16 7 4.2333 -3.7829 -1.2317 17 7 4.7671 -4.2700 -2.2981 18 6 3.8420 -4.8754 -3.0080 19 6 3.8407 -5.6003 -4.2856 20 8 4.8675 -5.7381 -4.9248 21 7 2.6725 -6.1105 -4.7347 22 1 2.6480 -6.5932 -5.5756 23 6 1.5132 -5.9476 -4.0012 24 6 1.5013 -5.2934 -2.8453 25 7 2.6586 -4.7462 -2.3228 26 1 -0.4850 0.8401 0.0004 27 1 0.1276 -1.2833 -1.7326 28 1 0.1754 -3.0424 -1.9996 29 1 -2.9971 -2.4950 -0.2431 30 1 1.1786 -4.3948 -0.0672 31 1 2.4960 -3.5992 0.8271 32 1 0.5907 -6.3637 -4.3782 33 1 0.5728 -5.1886 -2.3039 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072536.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:22 Heat of formation + Delta-G solvation = -12.174194 kcal Electronic energy + Delta-G solvation = -23744.311596 eV Core-core repulsion = 20000.402463 eV Total energy + Delta-G solvation = -3743.909133 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.096 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.64873 -41.18736 -40.55702 -38.53672 -37.75409 -36.26660 -35.43905 -33.88725 -32.09908 -31.04973 -29.47290 -28.02084 -26.05899 -25.08798 -24.40527 -22.53489 -21.59856 -20.04142 -19.78846 -18.99066 -18.67994 -18.50457 -17.95679 -17.17190 -17.00392 -16.77741 -16.03479 -16.00307 -15.69659 -15.37783 -15.16134 -14.93266 -14.25438 -13.74440 -13.59402 -13.40894 -13.07498 -12.84211 -12.82788 -12.55181 -12.35272 -12.13151 -12.06900 -11.94531 -11.85803 -11.67948 -11.21694 -10.66457 -10.56271 -9.27391 -9.15247 -8.06186 -5.39997 -0.16010 0.27027 1.24721 1.43250 1.45318 1.47644 1.53803 1.60742 1.99694 2.14027 2.44039 2.74921 2.87873 3.11784 3.29547 3.48534 3.61720 3.83418 4.06155 4.40959 4.49244 4.61991 4.68909 4.78654 4.98510 5.05582 5.18670 5.38519 5.52309 5.62875 5.95260 6.11158 6.18141 6.57033 6.93820 7.39764 7.53844 7.72046 7.97567 9.02551 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.016880 B = 0.005859 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.377689 B = 4777.442057 C = 5796.483270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.032 4.032 3 Si 0.960 3.040 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.264 4.264 8 H 0.073 0.927 9 N -0.565 5.565 10 C 0.187 3.813 11 C 0.485 3.515 12 O -0.550 6.550 13 O -0.530 6.530 14 C 0.229 3.771 15 C 0.205 3.795 16 N -0.311 5.311 17 N -0.263 5.263 18 C 0.073 3.927 19 C 0.600 3.400 20 O -0.530 6.530 21 N -0.612 5.612 22 H 0.448 0.552 23 C 0.122 3.878 24 C -0.064 4.064 25 N -0.374 5.374 26 H 0.254 0.746 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.405 0.595 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.257 0.743 33 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.793 -14.757 -10.390 19.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.229 4.229 3 Si 0.789 3.211 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.394 4.394 8 H 0.091 0.909 9 N -0.283 5.283 10 C 0.059 3.941 11 C 0.326 3.674 12 O -0.439 6.439 13 O -0.342 6.342 14 C 0.098 3.902 15 C -0.064 4.064 16 N -0.154 5.154 17 N -0.110 5.110 18 C -0.190 4.190 19 C 0.385 3.615 20 O -0.403 6.403 21 N -0.257 5.257 22 H 0.292 0.708 23 C 0.002 3.998 24 C -0.180 4.180 25 N -0.060 5.060 26 H 0.063 0.937 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.264 0.736 30 H 0.117 0.883 31 H 0.104 0.896 32 H 0.273 0.727 33 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.562 -14.057 -10.119 18.191 hybrid contribution -0.964 0.836 0.297 1.310 sum -6.526 -13.221 -9.822 17.716 Atomic orbital electron populations 1.69954 1.05800 1.26070 1.54613 1.25332 0.95918 1.00579 1.01036 0.85376 0.78121 0.80173 0.77418 1.21350 1.21984 1.20407 1.19439 0.95518 0.85881 1.38514 0.90921 1.43943 1.23941 1.01295 1.59152 1.20278 0.80648 1.02932 0.90279 1.24951 0.84191 0.69229 0.88997 1.90530 1.86629 1.47350 1.19357 1.84518 1.17326 1.85617 1.46719 1.19358 0.92267 0.87806 0.90731 1.26838 0.95009 0.93730 0.90853 1.74691 1.06333 1.20278 1.14140 1.74440 1.26031 1.09744 1.00764 1.24914 0.85029 1.09578 0.99506 1.16469 0.84658 0.78519 0.81824 1.90939 1.32840 1.58787 1.57769 1.43280 1.05622 1.51284 1.25479 0.70819 1.22414 0.91743 0.96128 0.89546 1.21870 0.89926 1.06370 0.99867 1.43860 1.09520 1.36746 1.15847 0.93671 0.89141 0.88923 0.73644 0.88273 0.89631 0.72702 0.77558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.28 9.31 21.65 0.20 -49.08 16 2 C -0.03 -1.71 4.86 84.86 0.41 -1.30 16 3 Si 0.96 44.72 29.61 68.60 2.03 46.75 16 4 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 7 C -0.26 -13.78 9.66 84.04 0.81 -12.97 16 8 H 0.07 3.96 7.92 -2.91 -0.02 3.94 16 9 N -0.56 -24.90 2.01 -710.68 -1.43 -26.33 16 10 C 0.19 7.35 5.49 85.63 0.47 7.82 16 11 C 0.48 19.44 6.54 71.23 0.47 19.90 16 12 O -0.55 -26.26 16.89 21.97 0.37 -25.89 16 13 O -0.53 -16.86 13.42 -51.43 -0.69 -17.55 16 14 C 0.23 8.40 6.16 85.63 0.53 8.92 16 15 C 0.21 7.54 7.70 138.09 1.06 8.60 16 16 N -0.31 -13.68 12.23 -50.38 -0.62 -14.29 16 17 N -0.26 -11.37 12.29 -51.58 -0.63 -12.01 16 18 C 0.07 2.53 8.12 135.97 1.10 3.63 16 19 C 0.60 16.36 7.97 86.45 0.69 17.05 16 20 O -0.53 -18.12 17.98 -4.47 -0.08 -18.20 16 21 N -0.61 -7.73 5.38 -313.50 -1.69 -9.42 16 22 H 0.45 2.30 8.92 -92.71 -0.83 1.47 16 23 C 0.12 0.85 11.09 82.52 0.92 1.76 16 24 C -0.06 -0.99 10.39 82.50 0.86 -0.14 16 25 N -0.37 -10.90 2.97 -338.65 -1.01 -11.91 16 26 H 0.25 13.48 8.31 -92.70 -0.77 12.71 16 27 H 0.09 4.13 6.35 -2.39 -0.02 4.11 16 28 H 0.09 2.70 6.99 -2.39 -0.02 2.69 16 29 H 0.40 9.67 9.10 -74.06 -0.67 8.99 16 30 H 0.10 2.95 8.07 -2.39 -0.02 2.93 16 31 H 0.09 3.37 8.04 -2.39 -0.02 3.35 16 32 H 0.26 -1.71 8.06 -2.91 -0.02 -1.73 16 33 H 0.21 2.03 7.46 -2.91 -0.02 2.01 16 Total: -1.00 -85.51 300.63 3.49 -82.02 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -0.29 Total: 2.63 kcal Atomic # 6 Polarization: 45.96 SS G_CDS: 7.32 Total: 53.28 kcal Atomic # 7 Polarization: -117.87 SS G_CDS: -5.17 Total: -123.04 kcal Atomic # 8 Polarization: -61.24 SS G_CDS: -0.40 Total: -61.64 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -85.51 3.49 -82.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072536.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.850 kcal (2) G-P(sol) polarization free energy of solvation -85.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds