Wall clock time and date at job start Tue Mar 31 2020 03:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35978 * 116.99768 * 2 1 4 4 C 1.37976 * 119.95724 * 0.25627 * 3 2 1 5 5 C 1.40304 * 119.90570 * 180.29417 * 4 3 2 6 6 C 1.46485 * 120.08525 * 179.69837 * 5 4 3 7 7 N 1.31205 * 120.00184 * 0.02812 * 6 5 4 8 8 C 1.34914 * 120.00069 * 179.97438 * 7 6 5 9 9 O 1.21966 * 120.00308 * 0.02562 * 8 7 6 10 10 C 1.46181 * 120.00027 * 179.97438 * 8 7 6 11 11 H 1.07997 * 119.99720 * 359.97438 * 10 8 7 12 12 C 1.40265 * 119.99919 * 180.02562 * 10 8 7 13 13 N 1.30553 * 120.00177 * 359.97438 * 12 10 8 14 14 Si 1.86803 * 119.99919 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47181 * 59.99779 * 14 12 10 16 16 H 1.48496 * 109.47167 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47001 * 299.99734 * 14 12 10 18 18 C 1.40299 * 119.82380 * 359.72655 * 5 4 3 19 19 C 1.37970 * 119.91079 * 359.97438 * 18 5 4 20 20 O 1.35980 * 119.95659 * 179.97438 * 19 18 5 21 21 C 1.42898 * 116.99985 * 0.02562 * 20 19 18 22 22 C 1.39550 * 120.09162 * 359.97438 * 19 18 5 23 23 O 1.35755 * 119.91303 * 180.02562 * 22 19 18 24 24 C 1.42899 * 116.99788 * 90.00626 * 23 22 19 25 25 H 1.08997 * 109.47162 * 300.00076 * 1 2 3 26 26 H 1.08998 * 109.46855 * 60.00248 * 1 2 3 27 27 H 1.08999 * 109.46820 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.04677 * 0.02562 * 4 3 2 29 29 H 1.08005 * 119.99866 * 180.02562 * 6 5 4 30 30 H 0.97000 * 119.99819 * 180.02562 * 13 12 10 31 31 H 1.07996 * 120.04330 * 179.97438 * 18 5 4 32 32 H 1.09007 * 109.47023 * 60.00381 * 21 20 19 33 33 H 1.09003 * 109.47277 * 180.02562 * 21 20 19 34 34 H 1.09003 * 109.47133 * 300.00763 * 21 20 19 35 35 H 1.09003 * 109.47072 * 300.00127 * 24 23 22 36 36 H 1.09000 * 109.47117 * 59.99653 * 24 23 22 37 37 H 1.08997 * 109.47303 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2939 2.3682 0.0053 5 6 1.9319 3.6177 -0.0009 6 6 1.1370 4.8481 -0.0019 7 7 -0.1734 4.7825 0.0036 8 6 -0.9056 5.9157 0.0031 9 8 -0.3494 7.0012 -0.0028 10 6 -2.3655 5.8427 0.0087 11 1 -2.8580 4.8816 0.0127 12 6 -3.1267 7.0208 0.0077 13 7 -2.5313 8.1827 0.0023 14 14 -4.9924 6.9275 0.0155 15 1 -5.4469 6.2077 1.2323 16 1 -5.5567 8.3010 0.0137 17 1 -5.4566 6.1995 -1.1927 18 6 3.3333 3.6857 -0.0068 19 6 4.0784 2.5245 -0.0058 20 8 5.4366 2.5892 -0.0120 21 6 6.0240 3.8919 -0.0188 22 6 3.4400 1.2835 0.0015 23 8 4.1767 0.1433 0.0029 24 6 4.5337 -0.3968 1.2768 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2155 2.3117 0.0099 29 1 1.6296 5.8093 -0.0072 30 1 -3.0577 8.9974 0.0020 31 1 3.8280 4.6456 -0.0120 32 1 5.7088 4.4371 0.8710 33 1 7.1102 3.8007 -0.0237 34 1 5.7008 4.4316 -0.9090 35 1 5.1245 0.3343 1.8288 36 1 3.6294 -0.6316 1.8383 37 1 5.1200 -1.3047 1.1352 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000260670.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:58 Heat of formation + Delta-G solvation = -94.406243 kcal Electronic energy + Delta-G solvation = -22831.205125 eV Core-core repulsion = 19154.977735 eV Total energy + Delta-G solvation = -3676.227390 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.65211 -38.95726 -37.88196 -37.63674 -36.28029 -33.54675 -32.52313 -30.17685 -29.58470 -27.78358 -27.37015 -27.10372 -26.33299 -23.84755 -21.89869 -21.43092 -19.28027 -18.01782 -17.35188 -17.04670 -16.68016 -16.17980 -16.16102 -15.52148 -15.48195 -14.97096 -14.68268 -14.51447 -14.41100 -14.31437 -13.37749 -13.05987 -12.97327 -12.65574 -12.40334 -11.98202 -11.84422 -11.55345 -11.51862 -11.48990 -11.26262 -10.98629 -10.88902 -10.87780 -10.50536 -9.89321 -9.48623 -9.07070 -8.85107 -8.10146 -7.88998 -7.85463 -6.57138 -4.98801 0.74870 1.50319 2.40784 2.84715 3.02702 3.03931 3.06926 3.64091 3.66528 3.87376 4.03062 4.48521 4.69476 4.98561 5.08303 5.10309 5.11790 5.24406 5.29786 5.31341 5.39121 5.43890 5.45383 5.48449 5.61300 5.69186 5.69571 5.83679 6.01252 6.26218 6.47256 6.66579 6.73755 7.07227 7.08069 7.29015 7.76312 7.91950 8.39221 8.60189 8.65878 10.17617 10.39330 Molecular weight = 293.11amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.003697 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.207172 B = 7571.464187 C = 8824.214588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.307 6.307 3 C 0.140 3.860 4 C -0.187 4.187 5 C 0.022 3.978 6 C 0.174 3.826 7 N -0.508 5.508 8 C 0.455 3.545 9 O -0.575 6.575 10 C -0.461 4.461 11 H 0.082 0.918 12 C 0.067 3.933 13 N -0.735 5.735 14 Si 0.921 3.079 15 H -0.263 1.263 16 H -0.276 1.276 17 H -0.263 1.263 18 C -0.210 4.210 19 C 0.140 3.860 20 O -0.306 6.306 21 C 0.024 3.976 22 C 0.029 3.971 23 O -0.313 6.313 24 C 0.036 3.964 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.152 0.848 29 H 0.112 0.888 30 H 0.278 0.722 31 H 0.139 0.861 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.826 -12.812 1.748 16.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.220 6.220 3 C 0.093 3.907 4 C -0.208 4.208 5 C 0.021 3.979 6 C -0.029 4.029 7 N -0.233 5.233 8 C 0.266 3.734 9 O -0.462 6.462 10 C -0.494 4.494 11 H 0.101 0.899 12 C -0.156 4.156 13 N -0.364 5.364 14 Si 0.744 3.256 15 H -0.187 1.187 16 H -0.201 1.201 17 H -0.187 1.187 18 C -0.231 4.231 19 C 0.094 3.906 20 O -0.219 6.219 21 C -0.071 4.071 22 C -0.017 4.017 23 O -0.229 6.229 24 C -0.059 4.059 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.170 0.830 29 H 0.129 0.871 30 H 0.089 0.911 31 H 0.157 0.843 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.536 -12.933 1.599 16.759 hybrid contribution -0.841 1.250 0.239 1.525 sum 9.696 -11.684 1.838 15.294 Atomic orbital electron populations 1.23152 0.77865 1.03781 1.02374 1.86090 1.21618 1.25876 1.88399 1.18877 0.90402 0.85096 0.96298 1.21528 1.01518 0.90207 1.07590 1.18684 0.91495 0.92491 0.95256 1.24118 0.92542 0.94743 0.91509 1.69449 1.06588 1.39230 1.08065 1.19456 0.90480 0.82854 0.80652 1.90653 1.73626 1.31204 1.50672 1.21205 0.89700 0.93820 1.44710 0.89946 1.26081 1.01566 0.94714 0.93189 1.69961 1.37825 0.98451 1.30170 0.86187 0.81002 0.78349 0.80042 1.18720 1.20096 1.18700 1.21227 0.93505 0.97440 1.10976 1.18704 0.82767 0.92367 0.96747 1.86111 1.16460 1.30763 1.88579 1.23125 0.98799 0.83330 1.01875 1.17141 0.86267 0.84462 1.13848 1.86062 1.70420 1.37821 1.28579 1.22955 0.99419 0.98324 0.85208 0.92120 0.91992 0.88272 0.83010 0.87123 0.91140 0.84292 0.92373 0.88251 0.92253 0.93873 0.93800 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.45 10.27 -34.34 -0.35 -4.81 16 3 C 0.14 2.21 6.69 -39.19 -0.26 1.94 16 4 C -0.19 -3.13 8.56 -38.90 -0.33 -3.47 16 5 C 0.02 0.38 5.87 -105.02 -0.62 -0.23 16 6 C 0.17 3.67 10.23 -14.50 -0.15 3.52 16 7 N -0.51 -12.60 9.50 -11.46 -0.11 -12.71 16 8 C 0.46 13.34 7.67 -13.01 -0.10 13.24 16 9 O -0.58 -18.47 14.54 4.95 0.07 -18.40 16 10 C -0.46 -13.05 9.63 -35.63 -0.34 -13.39 16 11 H 0.08 2.16 7.85 -52.49 -0.41 1.74 16 12 C 0.07 1.81 5.51 -17.33 -0.10 1.71 16 13 N -0.74 -21.09 11.82 55.56 0.66 -20.43 16 14 Si 0.92 19.16 29.56 -169.99 -5.03 14.14 16 15 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 16 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 17 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 18 C -0.21 -3.12 8.78 -38.91 -0.34 -3.46 16 19 C 0.14 2.08 6.69 -39.19 -0.26 1.82 16 20 O -0.31 -4.05 10.27 -34.35 -0.35 -4.41 16 21 C 0.02 0.22 9.81 101.05 0.99 1.21 16 22 C 0.03 0.46 5.77 -38.60 -0.22 0.24 16 23 O -0.31 -4.79 9.96 -44.30 -0.44 -5.23 16 24 C 0.04 0.41 11.13 101.05 1.12 1.53 16 25 H 0.06 0.66 7.64 -51.93 -0.40 0.27 16 26 H 0.06 0.69 7.67 -51.93 -0.40 0.30 16 27 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.15 2.57 5.75 -52.49 -0.30 2.27 16 29 H 0.11 2.37 7.26 -52.48 -0.38 1.99 16 30 H 0.28 7.09 8.29 -40.82 -0.34 6.76 16 31 H 0.14 1.74 6.27 -52.49 -0.33 1.41 16 32 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.51 7.65 -51.93 -0.40 0.11 16 35 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 330.16 15.07 4.98 4.98 Total: -1.00 -35.39 330.16 -4.46 -39.84 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -4.26 Total: 1.11 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 0.38 Total: 5.92 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.55 Total: -33.14 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -1.07 Total: -32.84 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.39 -4.46 -39.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000260670.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.563 kcal (2) G-P(sol) polarization free energy of solvation -35.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds