Wall clock time and date at job start Tue Mar 31 2020 03:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34222 * 116.99799 * 2 1 4 4 O 1.20831 * 120.00683 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00087 * 180.02562 * 3 2 1 6 6 O 1.42891 * 109.47540 * 180.02562 * 5 3 2 7 7 C 1.35713 * 117.00321 * 179.97438 * 6 5 3 8 8 C 1.39017 * 119.90593 * 0.29525 * 7 6 5 9 9 C 1.37679 * 120.09527 * 180.25233 * 8 7 6 10 10 C 1.39802 * 119.90504 * 359.45210 * 9 8 7 11 11 C 1.47492 * 120.09156 * 180.29375 * 10 9 8 12 12 O 1.21620 * 120.00330 * 317.64994 * 11 10 9 13 13 N 1.34777 * 119.99761 * 137.65159 * 11 10 9 14 14 C 1.46500 * 120.00114 * 182.03032 * 13 11 10 15 15 C 1.36907 * 120.00117 * 2.02984 * 13 11 10 16 16 H 1.08000 * 119.99468 * 310.57484 * 15 13 11 17 17 C 1.39021 * 119.99800 * 130.57153 * 15 13 11 18 18 N 1.31387 * 119.99445 * 170.18998 * 17 15 13 19 19 Si 1.86796 * 120.00241 * 350.18786 * 17 15 13 20 20 H 1.48503 * 109.46910 * 94.75045 * 19 17 15 21 21 H 1.48501 * 109.47330 * 214.74704 * 19 17 15 22 22 H 1.48496 * 109.47290 * 334.75102 * 19 17 15 23 23 C 1.39790 * 119.81102 * 0.27449 * 10 9 8 24 24 C 1.37688 * 119.90943 * 359.97438 * 23 10 9 25 25 H 1.09005 * 109.46940 * 299.99766 * 1 2 3 26 26 H 1.08996 * 109.47498 * 59.99494 * 1 2 3 27 27 H 1.08993 * 109.47184 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46789 * 59.99462 * 5 3 2 29 29 H 1.09002 * 109.46432 * 300.00267 * 5 3 2 30 30 H 1.07998 * 119.94993 * 359.97438 * 8 7 6 31 31 H 1.07995 * 120.04720 * 179.71877 * 9 8 7 32 32 H 1.08998 * 109.47305 * 84.69880 * 14 13 11 33 33 H 1.09001 * 109.47242 * 204.70090 * 14 13 11 34 34 H 1.09000 * 109.47183 * 324.70218 * 14 13 11 35 35 H 0.96999 * 119.99475 * 179.97438 * 18 17 15 36 36 H 1.08009 * 120.04886 * 180.02562 * 23 10 9 37 37 H 1.07997 * 119.95583 * 180.02562 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2749 -0.0006 6 8 3.9716 2.6452 0.0001 7 6 5.3058 2.8932 0.0003 8 6 6.2075 1.8351 -0.0065 9 6 7.5619 2.0822 -0.0011 10 6 8.0301 3.3995 -0.0005 11 6 9.4802 3.6690 -0.0013 12 8 10.2208 3.0143 0.7072 13 7 9.9845 4.6408 -0.7872 14 6 11.4296 4.8789 -0.8215 15 6 9.1464 5.4055 -1.5534 16 1 8.4018 4.9320 -2.1761 17 6 9.2538 6.7914 -1.5297 18 7 8.5890 7.5166 -2.4005 19 14 10.3432 7.6222 -0.2601 20 1 11.6827 7.8775 -0.8482 21 1 9.7298 8.9104 0.1516 22 1 10.4834 6.7394 0.9257 23 6 7.1199 4.4605 0.0006 24 6 5.7671 4.2046 0.0004 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.9557 0.7809 -0.8908 29 1 3.9564 0.7805 0.8892 30 1 5.8450 0.8178 -0.0114 31 1 8.2617 1.2597 -0.0018 32 1 11.8931 4.1986 -1.5360 33 1 11.6211 5.9086 -1.1235 34 1 11.8499 4.7067 0.1693 35 1 8.6636 8.4836 -2.3837 36 1 7.4774 5.4798 0.0007 37 1 5.0632 5.0237 0.0008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523726517.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:35 Heat of formation + Delta-G solvation = -109.497176 kcal Electronic energy + Delta-G solvation = -22805.031144 eV Core-core repulsion = 19128.149362 eV Total energy + Delta-G solvation = -3676.881782 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.114 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.86952 -39.88691 -38.83985 -36.94855 -36.36059 -34.94401 -32.00130 -30.96279 -30.39705 -29.31371 -27.26598 -26.44634 -24.93826 -22.64824 -22.32211 -21.10607 -19.30223 -18.49392 -17.70537 -17.41704 -17.16261 -17.00966 -16.24690 -15.61927 -15.46725 -14.91011 -14.68327 -14.18451 -13.91414 -13.58735 -13.56542 -13.04083 -12.97043 -12.72202 -12.68182 -12.44499 -12.29371 -12.09193 -11.69241 -11.47967 -11.15721 -10.95160 -10.91984 -10.76437 -10.43818 -10.36203 -10.08680 -9.31310 -8.77992 -8.55512 -7.83833 -7.72458 -6.50996 -4.27022 1.58294 1.82551 1.87060 1.90853 3.02329 3.17679 3.25579 3.48669 3.62075 4.06291 4.25541 4.36882 4.49727 4.72180 4.74232 4.76686 4.86238 4.88398 5.15646 5.16875 5.21013 5.74285 5.77275 5.89162 5.96662 6.08293 6.12846 6.26888 6.47108 6.47646 6.57179 6.75307 7.06805 7.16036 7.34479 7.41392 7.55492 8.01321 8.20203 8.86692 9.21736 9.58069 10.57263 Molecular weight = 293.11amu Principal moments of inertia in cm(-1) A = 0.027408 B = 0.003464 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.345869 B = 8081.218396 C = 8808.077826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.463 3.537 4 O -0.482 6.482 5 C 0.069 3.931 6 O -0.297 6.297 7 C 0.129 3.871 8 C -0.227 4.227 9 C -0.042 4.042 10 C -0.126 4.126 11 C 0.528 3.472 12 O -0.594 6.594 13 N -0.466 5.466 14 C 0.076 3.924 15 C -0.346 4.346 16 H 0.104 0.896 17 C 0.067 3.933 18 N -0.861 5.861 19 Si 0.878 3.122 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.259 1.259 23 C -0.010 4.010 24 C -0.158 4.158 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.277 0.723 36 H 0.155 0.845 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.021 -11.859 3.671 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.274 6.274 3 C 0.304 3.696 4 O -0.367 6.367 5 C -0.007 4.007 6 O -0.210 6.210 7 C 0.085 3.915 8 C -0.245 4.245 9 C -0.062 4.062 10 C -0.129 4.129 11 C 0.318 3.682 12 O -0.479 6.479 13 N -0.186 5.186 14 C -0.066 4.066 15 C -0.474 4.474 16 H 0.122 0.878 17 C -0.141 4.141 18 N -0.496 5.496 19 Si 0.705 3.295 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.183 1.183 23 C -0.028 4.028 24 C -0.176 4.176 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.172 0.828 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.076 -11.505 3.908 16.441 hybrid contribution 0.378 0.513 0.274 0.693 sum -10.698 -10.992 4.182 15.899 Atomic orbital electron populations 1.23321 0.75461 1.03925 1.02907 1.86445 1.23967 1.32537 1.84499 1.23107 0.91169 0.81846 0.73494 1.90733 1.66678 1.36156 1.43154 1.21814 0.88410 0.84929 1.05559 1.86014 1.21801 1.23839 1.89380 1.19125 0.80406 0.94565 0.97437 1.20946 0.93773 0.97634 1.12177 1.20877 0.94294 0.95957 0.95030 1.19820 0.94056 0.93465 1.05591 1.18339 0.87239 0.82659 0.80012 1.90642 1.60720 1.52796 1.43753 1.43507 1.05028 1.31723 1.38360 1.21776 0.83469 1.00340 1.01064 1.19073 1.16651 0.88127 1.23504 0.87808 1.25505 0.96149 0.96473 0.95936 1.69663 1.40243 1.06829 1.32851 0.86845 0.80380 0.79366 0.82950 1.19912 1.21212 1.18282 1.21597 0.90495 1.00803 0.89915 1.20405 0.96029 0.93559 1.07651 0.91652 0.91605 0.87734 0.87503 0.87562 0.85668 0.85547 0.93343 0.92152 0.92188 0.91287 0.82779 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.34 10.57 -39.24 -0.41 -3.76 16 3 C 0.46 5.41 8.03 36.01 0.29 5.70 16 4 O -0.48 -7.40 16.25 -25.48 -0.41 -7.81 16 5 C 0.07 0.73 5.32 36.01 0.19 0.92 16 6 O -0.30 -4.46 9.66 -38.80 -0.37 -4.84 16 7 C 0.13 2.09 6.70 -39.01 -0.26 1.83 16 8 C -0.23 -3.37 9.01 -39.50 -0.36 -3.72 16 9 C -0.04 -0.75 9.65 -39.20 -0.38 -1.13 16 10 C -0.13 -2.64 5.28 -104.96 -0.55 -3.19 16 11 C 0.53 12.51 7.27 -12.49 -0.09 12.42 16 12 O -0.59 -15.04 16.61 5.26 0.09 -14.96 16 13 N -0.47 -11.18 2.41 -123.40 -0.30 -11.48 16 14 C 0.08 1.65 8.82 59.85 0.53 2.18 16 15 C -0.35 -8.72 6.61 -15.00 -0.10 -8.82 16 16 H 0.10 2.81 7.49 -52.49 -0.39 2.42 16 17 C 0.07 1.71 5.16 -17.45 -0.09 1.62 16 18 N -0.86 -22.94 13.96 55.50 0.77 -22.16 16 19 Si 0.88 19.84 24.88 -169.99 -4.23 15.61 16 20 H -0.27 -5.96 6.89 56.52 0.39 -5.57 16 21 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.26 -5.98 7.03 56.52 0.40 -5.58 16 23 C -0.01 -0.20 8.09 -39.20 -0.32 -0.51 16 24 C -0.16 -2.83 9.97 -39.50 -0.39 -3.22 16 25 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 26 H 0.07 0.45 8.13 -51.93 -0.42 0.02 16 27 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.11 0.89 7.64 -51.93 -0.40 0.49 16 29 H 0.11 0.86 7.66 -51.93 -0.40 0.46 16 30 H 0.13 1.37 6.28 -52.49 -0.33 1.04 16 31 H 0.13 2.09 8.06 -52.49 -0.42 1.66 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.06 1.29 4.28 -51.93 -0.22 1.06 16 34 H 0.06 1.26 7.56 -51.93 -0.39 0.87 16 35 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.15 3.36 6.27 -52.48 -0.33 3.03 16 37 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 319.98 15.07 4.82 4.82 Total: -1.00 -31.78 319.98 -4.66 -36.43 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -4.15 Total: 2.76 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -0.47 Total: 5.38 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.48 Total: -33.64 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -1.12 Total: -31.36 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.23 Total: 15.61 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.78 -4.66 -36.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523726517.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.063 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds