Wall clock time and date at job start Tue Mar 31 2020 03:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34222 * 116.99799 * 2 1 4 4 O 1.20831 * 120.00683 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00087 * 180.02562 * 3 2 1 6 6 O 1.42891 * 109.47540 * 180.02562 * 5 3 2 7 7 C 1.35713 * 117.00321 * 179.97438 * 6 5 3 8 8 C 1.39017 * 119.90593 * 0.29525 * 7 6 5 9 9 C 1.37679 * 120.09527 * 180.25233 * 8 7 6 10 10 C 1.39802 * 119.90504 * 359.45210 * 9 8 7 11 11 C 1.47492 * 120.09156 * 180.29375 * 10 9 8 12 12 O 1.21620 * 120.00330 * 317.64994 * 11 10 9 13 13 N 1.34777 * 119.99761 * 137.65159 * 11 10 9 14 14 C 1.46500 * 120.00114 * 182.03032 * 13 11 10 15 15 C 1.36907 * 120.00117 * 2.02984 * 13 11 10 16 16 H 1.08000 * 119.99468 * 310.57484 * 15 13 11 17 17 C 1.39021 * 119.99800 * 130.57153 * 15 13 11 18 18 N 1.31387 * 119.99445 * 170.18998 * 17 15 13 19 19 Si 1.86796 * 120.00241 * 350.18786 * 17 15 13 20 20 H 1.48503 * 109.46910 * 94.75045 * 19 17 15 21 21 H 1.48501 * 109.47330 * 214.74704 * 19 17 15 22 22 H 1.48496 * 109.47290 * 334.75102 * 19 17 15 23 23 C 1.39790 * 119.81102 * 0.27449 * 10 9 8 24 24 C 1.37688 * 119.90943 * 359.97438 * 23 10 9 25 25 H 1.09005 * 109.46940 * 299.99766 * 1 2 3 26 26 H 1.08996 * 109.47498 * 59.99494 * 1 2 3 27 27 H 1.08993 * 109.47184 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46789 * 59.99462 * 5 3 2 29 29 H 1.09002 * 109.46432 * 300.00267 * 5 3 2 30 30 H 1.07998 * 119.94993 * 359.97438 * 8 7 6 31 31 H 1.07995 * 120.04720 * 179.71877 * 9 8 7 32 32 H 1.08998 * 109.47305 * 84.69880 * 14 13 11 33 33 H 1.09001 * 109.47242 * 204.70090 * 14 13 11 34 34 H 1.09000 * 109.47183 * 324.70218 * 14 13 11 35 35 H 0.96999 * 119.99475 * 179.97438 * 18 17 15 36 36 H 1.08009 * 120.04886 * 180.02562 * 23 10 9 37 37 H 1.07997 * 119.95583 * 180.02562 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2749 -0.0006 6 8 3.9716 2.6452 0.0001 7 6 5.3058 2.8932 0.0003 8 6 6.2075 1.8351 -0.0065 9 6 7.5619 2.0822 -0.0011 10 6 8.0301 3.3995 -0.0005 11 6 9.4802 3.6690 -0.0013 12 8 10.2208 3.0143 0.7072 13 7 9.9845 4.6408 -0.7872 14 6 11.4296 4.8789 -0.8215 15 6 9.1464 5.4055 -1.5534 16 1 8.4018 4.9320 -2.1761 17 6 9.2538 6.7914 -1.5297 18 7 8.5890 7.5166 -2.4005 19 14 10.3432 7.6222 -0.2601 20 1 11.6827 7.8775 -0.8482 21 1 9.7298 8.9104 0.1516 22 1 10.4834 6.7394 0.9257 23 6 7.1199 4.4605 0.0006 24 6 5.7671 4.2046 0.0004 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.9557 0.7809 -0.8908 29 1 3.9564 0.7805 0.8892 30 1 5.8450 0.8178 -0.0114 31 1 8.2617 1.2597 -0.0018 32 1 11.8931 4.1986 -1.5360 33 1 11.6211 5.9086 -1.1235 34 1 11.8499 4.7067 0.1693 35 1 8.6636 8.4836 -2.3837 36 1 7.4774 5.4798 0.0007 37 1 5.0632 5.0237 0.0008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523726517.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:34 Heat of formation + Delta-G solvation = -129.622172 kcal Electronic energy + Delta-G solvation = -22805.903829 eV Core-core repulsion = 19128.149362 eV Total energy + Delta-G solvation = -3677.754467 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.114 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.82799 -41.22487 -40.37108 -38.13737 -37.43907 -36.84212 -33.95980 -32.20887 -31.73278 -30.38606 -28.27361 -27.86295 -26.80417 -23.89343 -23.77002 -22.10396 -21.06324 -19.66447 -19.32751 -18.47226 -18.15963 -18.00730 -17.85370 -17.04078 -16.54639 -16.40350 -16.36085 -15.83048 -15.23889 -14.72508 -14.67976 -14.55815 -14.44242 -14.33601 -14.00569 -13.90173 -13.40641 -13.28610 -13.21482 -12.96458 -12.79219 -12.31373 -12.02808 -11.94544 -11.90451 -11.87481 -11.55264 -11.19000 -10.64645 -9.95682 -9.63887 -9.19344 -8.47877 -6.26119 0.14100 0.46434 0.99348 1.06950 1.21364 1.33050 1.43400 1.90956 2.18181 2.49490 2.63384 2.80339 3.04398 3.56621 3.84013 4.00287 4.04616 4.05925 4.09230 4.29857 4.32854 4.37482 4.40886 4.51693 4.56557 4.70683 4.73970 4.77563 5.11031 5.19378 5.21682 5.31966 5.46078 5.63781 5.72713 6.08344 6.20038 6.29047 6.59133 6.92289 7.30838 7.69446 8.63867 Molecular weight = 293.11amu Principal moments of inertia in cm(-1) A = 0.027408 B = 0.003464 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.345869 B = 8081.218396 C = 8808.077826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.467 3.533 4 O -0.529 6.529 5 C 0.058 3.942 6 O -0.314 6.314 7 C 0.145 3.855 8 C -0.205 4.205 9 C -0.040 4.040 10 C -0.162 4.162 11 C 0.524 3.476 12 O -0.615 6.615 13 N -0.479 5.479 14 C 0.072 3.928 15 C -0.334 4.334 16 H 0.077 0.923 17 C 0.035 3.965 18 N -0.898 5.898 19 Si 0.927 3.073 20 H -0.255 1.255 21 H -0.283 1.283 22 H -0.269 1.269 23 C -0.022 4.022 24 C -0.171 4.171 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.178 0.822 31 H 0.140 0.860 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.281 0.719 36 H 0.127 0.873 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.618 -14.216 4.183 18.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.267 6.267 3 C 0.311 3.689 4 O -0.418 6.418 5 C -0.017 4.017 6 O -0.228 6.228 7 C 0.100 3.900 8 C -0.224 4.224 9 C -0.059 4.059 10 C -0.165 4.165 11 C 0.315 3.685 12 O -0.502 6.502 13 N -0.199 5.199 14 C -0.070 4.070 15 C -0.462 4.462 16 H 0.095 0.905 17 C -0.170 4.170 18 N -0.534 5.534 19 Si 0.752 3.248 20 H -0.180 1.180 21 H -0.210 1.210 22 H -0.193 1.193 23 C -0.041 4.041 24 C -0.189 4.189 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.157 0.843 28 H 0.157 0.843 29 H 0.159 0.841 30 H 0.195 0.805 31 H 0.158 0.842 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.144 0.856 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.672 -13.891 4.410 18.673 hybrid contribution 0.367 1.060 0.123 1.128 sum -11.306 -12.831 4.534 17.692 Atomic orbital electron populations 1.23637 0.73949 1.06148 1.02669 1.86447 1.25407 1.31089 1.83760 1.23386 0.91653 0.81770 0.72141 1.90727 1.67729 1.37719 1.45606 1.22295 0.87823 0.82885 1.08695 1.85988 1.20763 1.27148 1.88911 1.19057 0.81361 0.94040 0.95566 1.21354 0.92078 0.99655 1.09264 1.21092 0.95924 0.94703 0.94180 1.19798 0.92475 0.95268 1.09000 1.18819 0.88522 0.81894 0.79248 1.90604 1.61706 1.53375 1.44482 1.43655 1.05868 1.31883 1.38494 1.21880 0.82340 1.00970 1.01837 1.18750 1.16409 0.88277 1.22775 0.90550 1.25954 0.97235 0.96754 0.97064 1.69728 1.41971 1.07273 1.34429 0.86076 0.79847 0.78250 0.80625 1.18014 1.20963 1.19313 1.21277 0.91593 0.99493 0.91736 1.20419 0.95124 0.95209 1.08177 0.91888 0.91980 0.84259 0.84328 0.84067 0.80511 0.84243 0.91626 0.91942 0.91805 0.90923 0.85560 0.84843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.51 16 2 O -0.35 -5.52 10.57 -51.34 -0.54 -6.06 16 3 C 0.47 9.77 8.03 71.24 0.57 10.34 16 4 O -0.53 -15.74 16.25 28.38 0.46 -15.28 16 5 C 0.06 0.99 5.32 71.24 0.38 1.37 16 6 O -0.31 -8.64 9.66 -71.26 -0.69 -9.33 16 7 C 0.15 4.36 6.70 22.64 0.15 4.51 16 8 C -0.21 -5.32 9.01 22.32 0.20 -5.12 16 9 C -0.04 -1.33 9.65 22.52 0.22 -1.11 16 10 C -0.16 -6.81 5.28 -20.08 -0.11 -6.92 16 11 C 0.52 25.07 7.27 86.68 0.63 25.70 16 12 O -0.61 -31.10 16.61 -4.10 -0.07 -31.17 16 13 N -0.48 -23.23 2.41 -662.57 -1.59 -24.82 16 14 C 0.07 3.08 8.82 127.77 1.13 4.20 16 15 C -0.33 -17.30 6.61 84.09 0.56 -16.74 16 16 H 0.08 4.33 7.49 -2.91 -0.02 4.31 16 17 C 0.03 1.79 5.16 84.95 0.44 2.23 16 18 N -0.90 -48.88 13.96 21.68 0.30 -48.58 16 19 Si 0.93 41.13 24.88 68.60 1.71 42.83 16 20 H -0.26 -10.52 6.89 99.48 0.69 -9.84 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 22 H -0.27 -12.26 7.03 99.48 0.70 -11.56 16 23 C -0.02 -0.93 8.09 22.52 0.18 -0.74 16 24 C -0.17 -6.14 9.97 22.33 0.22 -5.92 16 25 H 0.06 0.74 8.13 -2.38 -0.02 0.72 16 26 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 27 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.14 1.55 7.64 -2.39 -0.02 1.54 16 29 H 0.14 1.49 7.66 -2.39 -0.02 1.47 16 30 H 0.18 2.71 6.28 -2.91 -0.02 2.69 16 31 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 32 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.06 2.61 4.28 -2.39 -0.01 2.60 16 34 H 0.06 2.65 7.56 -2.39 -0.02 2.63 16 35 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 36 H 0.13 5.85 6.27 -2.91 -0.02 5.83 16 37 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -70.72 319.98 6.42 -64.30 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 1.07 Total: 14.79 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 5.77 Total: 13.31 kcal Atomic # 7 Polarization: -72.11 SS G_CDS: -1.29 Total: -73.40 kcal Atomic # 8 Polarization: -61.00 SS G_CDS: -0.84 Total: -61.84 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 1.71 Total: 42.83 kcal Total: -70.72 6.42 -64.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523726517.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.321 kcal (2) G-P(sol) polarization free energy of solvation -70.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds