Wall clock time and date at job start Tue Mar 31 2020 03:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 113.99893 * 2 1 4 4 C 1.52997 * 109.47050 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.67955 * 182.34947 * 4 3 2 6 6 C 1.53295 * 109.68384 * 61.83115 * 4 3 2 7 7 O 1.42959 * 109.22488 * 187.97362 * 6 4 3 8 8 C 1.42965 * 114.16428 * 62.58112 * 7 6 4 9 9 C 1.53296 * 109.22337 * 297.41784 * 8 7 6 10 10 N 1.47151 * 109.68066 * 302.90450 * 4 3 2 11 11 S 1.65600 * 120.98352 * 350.23865 * 10 4 3 12 12 O 1.42099 * 104.27872 * 208.51090 * 11 10 4 13 13 O 1.42104 * 104.27525 * 336.36794 * 11 10 4 14 14 C 1.81393 * 104.45069 * 92.43846 * 11 10 4 15 15 C 1.53003 * 109.47317 * 188.70943 * 14 11 10 16 16 C 1.50700 * 109.47151 * 180.02562 * 15 14 11 17 17 H 1.08006 * 120.00033 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99956 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99948 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00141 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47187 * 89.99551 * 20 18 16 22 22 H 1.48497 * 109.47109 * 209.99809 * 20 18 16 23 23 H 1.48505 * 109.46938 * 329.99817 * 20 18 16 24 24 H 1.08997 * 109.47454 * 299.99637 * 1 2 3 25 25 H 1.08995 * 109.46981 * 60.00614 * 1 2 3 26 26 H 1.09002 * 109.46740 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46876 * 300.00115 * 3 2 1 28 28 H 1.09001 * 109.47133 * 59.99659 * 3 2 1 29 29 H 1.08997 * 109.51206 * 307.90129 * 6 4 3 30 30 H 1.09005 * 109.50888 * 67.99952 * 6 4 3 31 31 H 1.08996 * 109.51441 * 57.34633 * 8 7 6 32 32 H 1.09006 * 109.50844 * 177.49848 * 8 7 6 33 33 H 1.09000 * 109.68371 * 172.02635 * 9 8 7 34 34 H 1.08999 * 109.67998 * 292.54439 * 9 8 7 35 35 H 1.08998 * 109.47438 * 308.71335 * 14 11 10 36 36 H 1.09000 * 109.47101 * 68.70706 * 14 11 10 37 37 H 1.09001 * 109.46835 * 299.99863 * 15 14 11 38 38 H 1.09001 * 109.46812 * 60.00171 * 15 14 11 39 39 H 0.96993 * 120.00083 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9824 2.1779 0.0414 6 6 3.9959 0.4649 -1.2734 7 8 5.3960 0.1917 -1.1794 8 6 5.7508 -0.6827 -0.1055 9 6 5.3804 -0.0217 1.2271 10 7 3.9705 0.3950 1.1623 11 16 2.9052 -0.0123 2.3630 12 8 3.7138 -0.1231 3.5262 13 8 1.8827 0.9703 2.2724 14 6 2.2701 -1.6389 1.8720 15 6 1.1112 -2.0324 2.7903 16 6 0.5840 -3.3841 2.3827 17 1 1.0305 -3.9098 1.5516 18 6 -0.4690 -3.9492 3.0703 19 7 -1.0131 -3.3089 4.0820 20 14 -1.1231 -5.6244 2.5647 21 1 -0.3940 -6.6847 3.3059 22 1 -2.5717 -5.7061 2.8807 23 1 -0.9233 -5.8139 1.1054 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8463 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 3.4485 -0.4717 -1.3802 30 1 3.8052 1.0988 -2.1394 31 1 5.2100 -1.6235 -0.2081 32 1 6.8237 -0.8740 -0.1311 33 1 5.5155 -0.7345 2.0406 34 1 6.0140 0.8495 1.3934 35 1 1.9183 -1.5957 0.8412 36 1 3.0658 -2.3794 1.9535 37 1 1.4631 -2.0758 3.8210 38 1 0.3155 -1.2919 2.7087 39 1 -1.7536 -3.7066 4.5659 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922061484.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:47 Heat of formation + Delta-G solvation = -136.383959 kcal Electronic energy + Delta-G solvation = -24000.983668 eV Core-core repulsion = 20458.379939 eV Total energy + Delta-G solvation = -3542.603729 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.118 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.61960 -37.91289 -36.27671 -35.43442 -34.73883 -33.79404 -32.09292 -31.04745 -27.82872 -26.53371 -25.57537 -25.29267 -22.91166 -21.81811 -20.83349 -18.61922 -17.69536 -16.92286 -16.55606 -16.34332 -15.55208 -15.50964 -15.38085 -15.10820 -14.91833 -14.64033 -14.51826 -14.14020 -13.65612 -13.10148 -12.60962 -12.49430 -12.20326 -11.74171 -11.67261 -11.59383 -11.51699 -11.47461 -11.13971 -11.03835 -10.90556 -10.84289 -10.49879 -10.39388 -10.25444 -10.01690 -9.61403 -9.21119 -8.96575 -8.60843 -8.47693 -6.10763 -4.15282 0.88884 2.98784 3.25751 3.32421 3.34835 3.73165 3.93589 4.32053 4.41125 4.58722 4.62294 4.73002 5.05445 5.06988 5.18686 5.24466 5.27734 5.43246 5.48320 5.53234 5.68007 5.74584 5.83062 5.89889 5.94083 6.05552 6.11132 6.32513 6.41662 6.64117 6.77674 7.04027 7.32432 7.39442 7.44641 7.83771 8.22671 8.88691 9.49018 11.00161 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.020428 B = 0.005601 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.364921 B = 4997.829135 C = 5066.135960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.396 6.396 3 C -0.002 4.002 4 C 0.134 3.866 5 H 0.091 0.909 6 C 0.052 3.948 7 O -0.382 6.382 8 C 0.046 3.954 9 C 0.090 3.910 10 N -1.002 6.002 11 S 2.594 3.406 12 O -0.979 6.979 13 O -0.960 6.960 14 C -0.585 4.585 15 C 0.035 3.965 16 C -0.513 4.513 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.892 5.892 20 Si 0.896 3.104 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 H 0.056 0.944 25 H 0.034 0.966 26 H 0.095 0.905 27 H 0.056 0.944 28 H 0.138 0.862 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.149 0.851 36 H 0.107 0.893 37 H 0.023 0.977 38 H 0.034 0.966 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.285 8.343 -10.785 16.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.316 6.316 3 C -0.080 4.080 4 C 0.028 3.972 5 H 0.109 0.891 6 C -0.026 4.026 7 O -0.300 6.300 8 C -0.032 4.032 9 C -0.036 4.036 10 N -0.839 5.839 11 S 2.697 3.303 12 O -0.970 6.970 13 O -0.951 6.951 14 C -0.719 4.719 15 C -0.004 4.004 16 C -0.553 4.553 17 H 0.078 0.922 18 C -0.145 4.145 19 N -0.530 5.530 20 Si 0.724 3.276 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.198 1.198 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.113 0.887 27 H 0.074 0.926 28 H 0.155 0.845 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.166 0.834 36 H 0.125 0.875 37 H 0.041 0.959 38 H 0.052 0.948 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.236 8.827 -9.986 16.216 hybrid contribution -0.721 -1.355 -0.494 1.612 sum 8.515 7.472 -10.480 15.433 Atomic orbital electron populations 1.22781 0.79325 1.03821 1.00091 1.87696 1.21706 1.26740 1.95488 1.23904 0.90863 0.88028 1.05198 1.21672 0.93709 0.95481 0.86377 0.89108 1.23026 0.82058 1.00850 0.96713 1.87903 1.23942 1.67656 1.50499 1.22994 1.01192 0.92721 0.86299 1.22006 0.82063 1.00717 0.98805 1.58035 1.20042 1.67959 1.37876 1.05610 0.73360 0.78686 0.72626 1.93497 1.68553 1.88346 1.46588 1.93309 1.59102 1.57467 1.85184 1.30662 1.10612 1.17262 1.13329 1.18879 0.90178 0.98566 0.92743 1.21012 1.16158 1.02211 1.15921 0.92155 1.25051 0.96569 0.97873 0.94968 1.69956 1.24500 1.38253 1.20332 0.86529 0.78133 0.84038 0.78928 1.20540 1.21089 1.19787 0.92539 0.94747 0.88666 0.92589 0.84525 0.91243 0.88273 0.92239 0.87940 0.88506 0.90683 0.83375 0.87475 0.95892 0.94755 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.72 101.05 1.08 1.62 16 2 O -0.40 -6.07 4.79 -56.98 -0.27 -6.34 16 3 C 0.00 -0.03 4.62 37.16 0.17 0.14 16 4 C 0.13 1.68 3.45 -67.42 -0.23 1.45 16 5 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 6 C 0.05 0.59 6.24 37.31 0.23 0.82 16 7 O -0.38 -4.65 10.74 -35.23 -0.38 -5.03 16 8 C 0.05 0.50 6.98 37.31 0.26 0.76 16 9 C 0.09 1.11 6.49 -3.53 -0.02 1.09 16 10 N -1.00 -14.64 3.23 -106.03 -0.34 -14.98 16 11 S 2.59 48.53 4.66 -107.50 -0.50 48.03 16 12 O -0.98 -21.10 16.90 -57.54 -0.97 -22.08 16 13 O -0.96 -18.85 12.49 -66.27 -0.83 -19.68 16 14 C -0.58 -11.65 5.55 37.16 0.21 -11.44 16 15 C 0.04 0.90 4.98 -27.88 -0.14 0.76 16 16 C -0.51 -13.98 9.11 -34.44 -0.31 -14.29 16 17 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 20 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H 0.06 0.92 7.98 -51.93 -0.41 0.50 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.14 2.10 5.03 -55.41 -0.28 1.82 16 29 H 0.07 0.85 7.54 -51.93 -0.39 0.46 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.10 1.19 7.30 -51.93 -0.38 0.81 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.15 2.79 5.10 -51.92 -0.27 2.52 16 36 H 0.11 1.99 8.14 -51.92 -0.42 1.57 16 37 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 319.14 15.07 4.81 4.81 Total: -1.00 -33.05 319.14 -7.54 -40.59 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -5.92 Total: 1.71 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 1.15 Total: -17.59 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.39 Total: -40.44 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -2.45 Total: -53.12 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 48.53 SS G_CDS: -0.50 Total: 48.03 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.05 -7.54 -40.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922061484.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.790 kcal (2) G-P(sol) polarization free energy of solvation -33.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds