Wall clock time and date at job start Tue Mar 31 2020 03:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 113.99893 * 2 1 4 4 C 1.52997 * 109.47050 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.67955 * 182.34947 * 4 3 2 6 6 C 1.53295 * 109.68384 * 61.83115 * 4 3 2 7 7 O 1.42959 * 109.22488 * 187.97362 * 6 4 3 8 8 C 1.42965 * 114.16428 * 62.58112 * 7 6 4 9 9 C 1.53296 * 109.22337 * 297.41784 * 8 7 6 10 10 N 1.47151 * 109.68066 * 302.90450 * 4 3 2 11 11 S 1.65600 * 120.98352 * 350.23865 * 10 4 3 12 12 O 1.42099 * 104.27872 * 208.51090 * 11 10 4 13 13 O 1.42104 * 104.27525 * 336.36794 * 11 10 4 14 14 C 1.81393 * 104.45069 * 92.43846 * 11 10 4 15 15 C 1.53003 * 109.47317 * 188.70943 * 14 11 10 16 16 C 1.50700 * 109.47151 * 180.02562 * 15 14 11 17 17 H 1.08006 * 120.00033 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99956 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99948 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00141 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47187 * 89.99551 * 20 18 16 22 22 H 1.48497 * 109.47109 * 209.99809 * 20 18 16 23 23 H 1.48505 * 109.46938 * 329.99817 * 20 18 16 24 24 H 1.08997 * 109.47454 * 299.99637 * 1 2 3 25 25 H 1.08995 * 109.46981 * 60.00614 * 1 2 3 26 26 H 1.09002 * 109.46740 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46876 * 300.00115 * 3 2 1 28 28 H 1.09001 * 109.47133 * 59.99659 * 3 2 1 29 29 H 1.08997 * 109.51206 * 307.90129 * 6 4 3 30 30 H 1.09005 * 109.50888 * 67.99952 * 6 4 3 31 31 H 1.08996 * 109.51441 * 57.34633 * 8 7 6 32 32 H 1.09006 * 109.50844 * 177.49848 * 8 7 6 33 33 H 1.09000 * 109.68371 * 172.02635 * 9 8 7 34 34 H 1.08999 * 109.67998 * 292.54439 * 9 8 7 35 35 H 1.08998 * 109.47438 * 308.71335 * 14 11 10 36 36 H 1.09000 * 109.47101 * 68.70706 * 14 11 10 37 37 H 1.09001 * 109.46835 * 299.99863 * 15 14 11 38 38 H 1.09001 * 109.46812 * 60.00171 * 15 14 11 39 39 H 0.96993 * 120.00083 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9824 2.1779 0.0414 6 6 3.9959 0.4649 -1.2734 7 8 5.3960 0.1917 -1.1794 8 6 5.7508 -0.6827 -0.1055 9 6 5.3804 -0.0217 1.2271 10 7 3.9705 0.3950 1.1623 11 16 2.9052 -0.0123 2.3630 12 8 3.7138 -0.1231 3.5262 13 8 1.8827 0.9703 2.2724 14 6 2.2701 -1.6389 1.8720 15 6 1.1112 -2.0324 2.7903 16 6 0.5840 -3.3841 2.3827 17 1 1.0305 -3.9098 1.5516 18 6 -0.4690 -3.9492 3.0703 19 7 -1.0131 -3.3089 4.0820 20 14 -1.1231 -5.6244 2.5647 21 1 -0.3940 -6.6847 3.3059 22 1 -2.5717 -5.7061 2.8807 23 1 -0.9233 -5.8139 1.1054 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8463 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 3.4485 -0.4717 -1.3802 30 1 3.8052 1.0988 -2.1394 31 1 5.2100 -1.6235 -0.2081 32 1 6.8237 -0.8740 -0.1311 33 1 5.5155 -0.7345 2.0406 34 1 6.0140 0.8495 1.3934 35 1 1.9183 -1.5957 0.8412 36 1 3.0658 -2.3794 1.9535 37 1 1.4631 -2.0758 3.8210 38 1 0.3155 -1.2919 2.7087 39 1 -1.7536 -3.7066 4.5659 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922061484.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:47 Heat of formation + Delta-G solvation = -161.313627 kcal Electronic energy + Delta-G solvation = -24002.064700 eV Core-core repulsion = 20458.379939 eV Total energy + Delta-G solvation = -3543.684761 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.118 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.62385 -39.10456 -37.73676 -36.98201 -35.95577 -35.67210 -33.18001 -32.91489 -28.87667 -27.66710 -27.46246 -26.40580 -23.90710 -23.57928 -22.07056 -20.00736 -19.11873 -18.44040 -17.99689 -17.47514 -17.01737 -16.68345 -16.52031 -16.40280 -16.34657 -16.07024 -15.78120 -15.30603 -14.84088 -14.66346 -14.44510 -13.85621 -13.63295 -13.22590 -13.13868 -13.09692 -12.92119 -12.75378 -12.61508 -12.42729 -12.26576 -12.23783 -12.11879 -11.83433 -11.73228 -11.39053 -11.28024 -10.84130 -10.61950 -10.17575 -9.72273 -8.23491 -6.36314 -0.61167 1.40586 1.41659 1.52867 1.68555 2.38741 2.76426 2.88062 2.95630 3.09791 3.23481 3.51302 3.76298 4.00483 4.16195 4.20684 4.24112 4.35507 4.39945 4.48521 4.59462 4.63638 4.69194 4.73107 4.86474 4.94221 5.02673 5.06791 5.08887 5.28636 5.35293 5.43806 5.57212 5.73257 6.11809 6.17218 6.21372 6.76575 7.33108 8.88508 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.020428 B = 0.005601 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.364921 B = 4997.829135 C = 5066.135960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.410 6.410 3 C -0.006 4.006 4 C 0.130 3.870 5 H 0.113 0.887 6 C 0.055 3.945 7 O -0.388 6.388 8 C 0.047 3.953 9 C 0.080 3.920 10 N -0.997 5.997 11 S 2.612 3.388 12 O -1.011 7.011 13 O -0.973 6.973 14 C -0.585 4.585 15 C 0.036 3.964 16 C -0.530 4.530 17 H 0.070 0.930 18 C 0.000 4.000 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.258 1.258 24 H 0.034 0.966 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.115 0.885 29 H 0.060 0.940 30 H 0.128 0.872 31 H 0.057 0.943 32 H 0.132 0.868 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.161 0.839 36 H 0.118 0.882 37 H -0.010 1.010 38 H 0.013 0.987 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.431 8.293 -13.292 18.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.330 6.330 3 C -0.084 4.084 4 C 0.025 3.975 5 H 0.131 0.869 6 C -0.023 4.023 7 O -0.306 6.306 8 C -0.031 4.031 9 C -0.045 4.045 10 N -0.837 5.837 11 S 2.714 3.286 12 O -1.002 7.002 13 O -0.963 6.963 14 C -0.717 4.717 15 C -0.003 4.003 16 C -0.569 4.569 17 H 0.088 0.912 18 C -0.198 4.198 19 N -0.573 5.573 20 Si 0.792 3.208 21 H -0.199 1.199 22 H -0.207 1.207 23 H -0.182 1.182 24 H 0.052 0.948 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.111 0.889 28 H 0.132 0.868 29 H 0.078 0.922 30 H 0.146 0.854 31 H 0.075 0.925 32 H 0.150 0.850 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.179 0.821 36 H 0.136 0.864 37 H 0.008 0.992 38 H 0.032 0.968 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.385 8.763 -12.499 18.463 hybrid contribution -1.020 -1.234 0.254 1.621 sum 9.365 7.530 -12.245 17.157 Atomic orbital electron populations 1.22728 0.79513 1.02948 1.00733 1.87626 1.21636 1.28167 1.95580 1.23954 0.91384 0.87126 1.05891 1.21984 0.93238 0.96403 0.85919 0.86925 1.23095 0.81660 1.00803 0.96783 1.87907 1.24191 1.67795 1.50699 1.23116 1.02949 0.92102 0.84921 1.22310 0.80617 1.01613 0.99941 1.57713 1.20287 1.67865 1.37790 1.04843 0.73319 0.77745 0.72724 1.93451 1.69396 1.88516 1.48815 1.93351 1.60167 1.57178 1.85596 1.30590 1.09013 1.19396 1.12697 1.18674 0.91535 0.97842 0.92199 1.21442 1.16327 1.03033 1.16070 0.91215 1.26025 0.96881 1.02098 0.94824 1.70098 1.25208 1.40332 1.21710 0.85404 0.77366 0.78777 0.79265 1.19928 1.20732 1.18216 0.94757 0.91215 0.90354 0.88873 0.86791 0.92211 0.85408 0.92504 0.85034 0.88861 0.89083 0.82119 0.86387 0.99167 0.96825 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.09 10.72 113.37 1.22 2.31 16 2 O -0.41 -12.14 4.79 -128.19 -0.61 -12.75 16 3 C -0.01 -0.15 4.62 71.98 0.33 0.19 16 4 C 0.13 2.92 3.45 44.96 0.15 3.07 16 5 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 6 C 0.05 1.06 6.24 72.08 0.45 1.51 16 7 O -0.39 -8.08 10.74 -148.98 -1.60 -9.68 16 8 C 0.05 0.88 6.98 72.08 0.50 1.39 16 9 C 0.08 1.82 6.49 86.35 0.56 2.38 16 10 N -1.00 -27.64 3.23 -489.37 -1.58 -29.22 16 11 S 2.61 98.79 4.66 -56.49 -0.26 98.52 16 12 O -1.01 -44.44 16.90 -127.65 -2.16 -46.60 16 13 O -0.97 -38.95 12.49 -119.30 -1.49 -40.44 16 14 C -0.58 -23.71 5.55 71.98 0.40 -23.31 16 15 C 0.04 1.92 4.98 29.85 0.15 2.07 16 16 C -0.53 -29.38 9.11 25.60 0.23 -29.14 16 17 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 18 C 0.00 0.00 5.46 84.65 0.46 0.46 16 19 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 20 Si 0.97 43.22 29.54 68.60 2.03 45.25 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 24 H 0.03 1.15 7.98 -2.39 -0.02 1.13 16 25 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 26 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.12 3.42 5.03 -57.55 -0.29 3.13 16 29 H 0.06 1.29 7.54 -2.39 -0.02 1.27 16 30 H 0.13 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 32 H 0.13 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.09 2.18 7.30 -2.39 -0.02 2.17 16 34 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.16 6.07 5.10 -2.39 -0.01 6.05 16 36 H 0.12 4.42 8.14 -2.39 -0.02 4.40 16 37 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 38 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -72.76 319.14 -0.17 -72.94 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.76 Total: 17.26 kcal Atomic # 6 Polarization: -43.55 SS G_CDS: 4.46 Total: -39.09 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -1.29 Total: -85.41 kcal Atomic # 8 Polarization: -103.61 SS G_CDS: -5.86 Total: -109.47 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 98.79 SS G_CDS: -0.26 Total: 98.52 kcal Total: -72.76 -0.17 -72.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922061484.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.378 kcal (2) G-P(sol) polarization free energy of solvation -72.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds