Wall clock time and date at job start Tue Mar 31 2020 03:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.26982 * 125.12020 * 2 1 4 4 N 1.39339 * 114.48625 * 180.17059 * 3 2 1 5 5 C 1.34784 * 125.64695 * 179.76145 * 4 3 2 6 6 O 1.21305 * 119.99695 * 174.80646 * 5 4 3 7 7 C 1.50697 * 120.00274 * 354.81385 * 5 4 3 8 8 C 1.47202 * 109.47097 * 179.97438 * 7 5 4 9 9 N 6.72396 * 136.79794 * 358.79884 * 2 1 3 10 10 C 1.47235 * 108.69781 * 359.50633 * 4 3 2 11 11 C 1.53006 * 110.65831 * 241.65295 * 10 4 3 12 12 N 1.46895 * 110.66102 * 118.70472 * 10 4 3 13 13 N 1.36607 * 110.99672 * 185.01937 * 12 10 4 14 14 C 1.34779 * 119.99849 * 185.10074 * 13 12 10 15 15 O 1.21683 * 120.00192 * 0.02562 * 14 13 12 16 16 C 1.46379 * 119.99703 * 179.97438 * 14 13 12 17 17 H 1.08000 * 119.99917 * 354.92514 * 16 14 13 18 18 C 1.40051 * 119.99645 * 174.92864 * 16 14 13 19 19 N 1.30672 * 120.00019 * 5.08342 * 18 16 14 20 20 Si 1.86794 * 119.99662 * 185.08466 * 18 16 14 21 21 H 1.48505 * 109.47134 * 94.99656 * 20 18 16 22 22 H 1.48500 * 109.47184 * 214.99534 * 20 18 16 23 23 H 1.48503 * 109.47288 * 334.99680 * 20 18 16 24 24 C 1.51209 * 125.12069 * 179.63148 * 2 1 3 25 25 H 1.08996 * 109.46879 * 270.36977 * 1 2 3 26 26 H 1.08992 * 109.47116 * 30.37376 * 1 2 3 27 27 H 1.09002 * 109.46927 * 150.37594 * 1 2 3 28 28 H 1.09005 * 109.47283 * 59.99315 * 7 5 4 29 29 H 1.08998 * 109.46809 * 299.99649 * 7 5 4 30 30 H 1.09001 * 109.46992 * 58.54948 * 11 10 4 31 31 H 1.08996 * 109.46262 * 178.54544 * 11 10 4 32 32 H 1.08998 * 109.46775 * 298.54508 * 11 10 4 33 33 H 1.00904 * 111.00243 * 308.96711 * 12 10 4 34 34 H 0.96995 * 120.00090 * 5.10448 * 13 12 10 35 35 H 0.96999 * 119.99894 * 180.02562 * 19 18 16 36 36 H 1.08998 * 110.56291 * 61.45099 * 24 2 1 37 37 H 1.09001 * 110.68104 * 298.66968 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2375 1.0386 0.0000 4 7 3.6070 0.7815 -0.0038 5 6 4.5811 1.7130 -0.0091 6 8 5.7428 1.3763 0.0831 7 6 4.2271 3.1729 -0.1294 8 6 5.4583 3.9795 -0.1103 9 7 6.4084 4.6020 -0.0965 10 6 3.8136 -0.6762 0.0052 11 6 4.5674 -1.1068 1.2652 12 7 4.5350 -1.1049 -1.2004 13 7 4.6335 -2.4664 -1.2537 14 6 5.3512 -3.0523 -2.2326 15 8 5.9119 -2.3685 -3.0685 16 6 5.4572 -4.5111 -2.2893 17 1 5.0299 -5.1146 -1.5022 18 6 6.1127 -5.1242 -3.3644 19 7 6.7155 -4.3936 -4.2647 20 14 6.1253 -6.9863 -3.5114 21 1 5.0171 -7.4203 -4.3997 22 1 7.4216 -7.4289 -4.0850 23 1 5.9472 -7.5903 -2.1665 24 6 2.3769 -1.2368 0.0080 25 1 -0.3633 0.0066 1.0276 26 1 -0.3633 0.8865 -0.5196 27 1 -0.3633 -0.8934 -0.5080 28 1 3.5903 3.4625 0.7066 29 1 3.6960 3.3419 -1.0662 30 1 4.0034 -0.8040 2.1474 31 1 4.6869 -2.1902 1.2645 32 1 5.5489 -0.6330 1.2810 33 1 4.0961 -0.7413 -2.0330 34 1 4.1869 -3.0115 -0.5871 35 1 7.1692 -4.8183 -5.0095 36 1 2.1982 -1.8363 -0.8847 37 1 2.1982 -1.8273 0.9065 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000302986.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:33 Heat of formation + Delta-G solvation = 49.525963 kcal Electronic energy + Delta-G solvation = -23457.729793 eV Core-core repulsion = 19852.329274 eV Total energy + Delta-G solvation = -3605.400519 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.21097 -38.88163 -37.65486 -36.40278 -35.17725 -33.37521 -32.55958 -31.74873 -30.57375 -28.59340 -28.37198 -27.12660 -25.68059 -22.51617 -21.01796 -19.93534 -19.36468 -17.89974 -17.50095 -16.92426 -16.48355 -15.87392 -15.61581 -15.21034 -14.96128 -14.70984 -14.02868 -13.85206 -13.78500 -13.75902 -13.24595 -13.00367 -12.82396 -12.54911 -12.47807 -12.44105 -12.20605 -12.01039 -11.76157 -11.68081 -11.59926 -11.27107 -11.09073 -10.58515 -10.47059 -10.29480 -10.08086 -9.55648 -8.86581 -8.71734 -7.68127 -6.97456 -6.25588 -4.70917 1.51868 2.01462 2.57042 2.74887 2.75818 3.10228 3.17296 3.21125 3.66970 3.83116 3.85534 4.00260 4.16683 4.44527 4.54963 4.69467 4.79595 5.01718 5.07805 5.10967 5.21809 5.26116 5.31596 5.46625 5.51648 5.74140 5.78727 5.92422 5.99635 6.34225 6.74797 7.10568 7.37319 7.40132 7.53180 7.85539 7.98174 8.20352 8.71455 8.95284 9.37371 10.56508 10.75902 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.017046 B = 0.004302 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.202523 B = 6506.544319 C = 7629.157453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.108 3.892 3 N -0.251 5.251 4 N -0.463 5.463 5 C 0.559 3.441 6 O -0.480 6.480 7 C -0.029 4.029 8 C 0.217 3.783 9 N -0.414 5.414 10 C 0.295 3.705 11 C -0.140 4.140 12 N -0.423 5.423 13 N -0.613 5.613 14 C 0.563 3.437 15 O -0.562 6.562 16 C -0.542 4.542 17 H 0.069 0.931 18 C 0.088 3.912 19 N -0.765 5.765 20 Si 0.911 3.089 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.264 1.264 24 C -0.176 4.176 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.324 0.676 34 H 0.378 0.622 35 H 0.270 0.730 36 H 0.107 0.893 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.344 6.978 10.813 21.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 N -0.058 5.058 4 N -0.286 5.286 5 C 0.346 3.654 6 O -0.348 6.348 7 C -0.072 4.072 8 C -0.102 4.102 9 N -0.091 5.091 10 C 0.118 3.882 11 C -0.199 4.199 12 N -0.148 5.148 13 N -0.365 5.365 14 C 0.366 3.634 15 O -0.440 6.440 16 C -0.580 4.580 17 H 0.087 0.913 18 C -0.132 4.132 19 N -0.393 5.393 20 Si 0.736 3.264 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.188 1.188 24 C -0.218 4.218 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.159 0.841 29 H 0.159 0.841 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.145 0.855 34 H 0.214 0.786 35 H 0.081 0.919 36 H 0.125 0.875 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.765 9.469 10.330 19.643 hybrid contribution -1.549 -2.474 -0.073 2.920 sum -15.314 6.995 10.257 19.714 Atomic orbital electron populations 1.20407 0.85267 1.04424 1.03864 1.25214 0.97290 0.90885 0.95278 1.73884 0.89615 1.27724 1.14563 1.49717 1.01557 1.05373 1.71968 1.19503 0.83694 0.86021 0.76222 1.90908 1.17182 1.81145 1.45540 1.18987 0.90703 0.88980 1.08510 1.28153 0.94208 0.93961 0.93874 1.81191 1.09414 1.10356 1.08091 1.22372 0.91183 0.79924 0.94680 1.21944 1.02080 1.02767 0.93080 1.61956 1.51052 0.99415 1.02355 1.45750 1.58603 0.96884 1.35301 1.18317 0.77661 0.88490 0.78911 1.90636 1.47946 1.64915 1.40543 1.20713 1.39258 0.89055 1.08992 0.91250 1.25681 0.93084 0.99693 0.94760 1.70027 1.23773 1.36344 1.09173 0.86304 0.78136 0.82864 0.79132 1.19820 1.20387 1.18843 1.23275 0.93922 0.98547 1.06082 0.89489 0.89833 0.89621 0.84138 0.84111 0.92286 0.90585 0.89508 0.85535 0.78622 0.91944 0.87454 0.87320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.48 36.01 0.38 0.00 16 2 C 0.11 0.94 7.43 -79.07 -0.59 0.35 16 3 N -0.25 -2.59 11.43 34.79 0.40 -2.20 16 4 N -0.46 -6.16 3.58 -49.30 -0.18 -6.33 16 5 C 0.56 8.01 7.65 -10.98 -0.08 7.93 16 6 O -0.48 -9.23 14.92 5.54 0.08 -9.15 16 7 C -0.03 -0.28 5.76 -30.67 -0.18 -0.45 16 8 C 0.22 2.85 14.67 -20.76 -0.30 2.55 16 9 N -0.41 -6.70 18.54 42.15 0.78 -5.92 16 10 C 0.29 4.30 0.82 -189.66 -0.15 4.15 16 11 C -0.14 -2.00 8.51 37.16 0.32 -1.68 16 12 N -0.42 -8.43 6.24 -1.00 -0.01 -8.43 16 13 N -0.61 -13.16 5.02 30.19 0.15 -13.01 16 14 C 0.56 15.70 7.83 -12.98 -0.10 15.60 16 15 O -0.56 -18.37 15.34 5.20 0.08 -18.29 16 16 C -0.54 -14.75 9.54 -35.63 -0.34 -15.09 16 17 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 18 C 0.09 2.40 5.50 -17.37 -0.10 2.31 16 19 N -0.76 -22.73 11.85 55.55 0.66 -22.08 16 20 Si 0.91 19.57 29.56 -169.99 -5.03 14.55 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 24 C -0.18 -1.84 5.67 -27.00 -0.15 -2.00 16 25 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.14 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.14 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.06 7.10 -51.93 -0.37 0.69 16 32 H 0.09 1.52 6.80 -51.93 -0.35 1.16 16 33 H 0.32 6.74 8.96 -181.36 -1.63 5.12 16 34 H 0.38 6.83 6.91 -185.15 -1.28 5.55 16 35 H 0.27 7.27 8.29 -40.82 -0.34 6.94 16 36 H 0.11 1.23 7.58 -51.93 -0.39 0.83 16 37 H 0.11 0.90 7.75 -51.93 -0.40 0.50 16 LS Contribution 331.72 15.07 5.00 5.00 Total: -1.00 -39.29 331.72 -5.87 -45.15 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -6.50 Total: 7.05 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: -1.30 Total: 13.65 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: 1.81 Total: -57.96 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: 0.16 Total: -27.44 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -39.29 -5.87 -45.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000302986.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.680 kcal (2) G-P(sol) polarization free energy of solvation -39.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds