Wall clock time and date at job start Tue Mar 31 2020 03:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.46830 * 2 1 4 4 C 1.42902 * 113.99672 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46865 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.46904 * 55.00382 * 5 4 3 7 7 O 1.42896 * 109.47320 * 295.00450 * 5 4 3 8 8 C 1.53003 * 109.47015 * 175.00276 * 5 4 3 9 9 N 1.46499 * 109.47169 * 185.00517 * 8 5 4 10 10 C 1.34771 * 119.99932 * 180.02562 * 9 8 5 11 11 O 1.21544 * 120.00201 * 0.26790 * 10 9 8 12 12 C 1.47891 * 119.99812 * 179.97438 * 10 9 8 13 13 C 1.39916 * 120.02791 * 359.71426 * 12 10 9 14 14 C 1.38326 * 120.36040 * 179.78548 * 13 12 10 15 15 C 1.37757 * 120.41212 * 0.47888 * 14 13 12 16 16 C 1.40743 * 120.03642 * 359.77962 * 15 14 13 17 17 C 1.41441 * 120.17666 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00072 * 150.18213 * 17 16 15 19 19 C 1.39936 * 119.99950 * 330.17731 * 17 16 15 20 20 N 1.30829 * 119.99907 * 161.72795 * 19 17 16 21 21 Si 1.86801 * 120.00302 * 341.73253 * 19 17 16 22 22 H 1.48498 * 109.47383 * 95.40495 * 21 19 17 23 23 H 1.48500 * 109.47273 * 215.41104 * 21 19 17 24 24 H 1.48500 * 109.46877 * 335.41022 * 21 19 17 25 25 C 1.38995 * 120.02353 * 179.97438 * 12 10 9 26 26 H 1.08995 * 109.47122 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47071 * 299.99203 * 1 2 3 28 28 H 1.09002 * 109.47847 * 59.99137 * 1 2 3 29 29 H 1.09002 * 109.47071 * 240.00797 * 2 1 3 30 30 H 1.08992 * 109.47562 * 120.00407 * 2 1 3 31 31 H 1.09002 * 109.47207 * 60.00703 * 4 3 2 32 32 H 1.08994 * 109.47598 * 300.00408 * 4 3 2 33 33 H 0.96704 * 113.99827 * 299.99909 * 7 5 4 34 34 H 1.08998 * 109.46933 * 64.99883 * 8 5 4 35 35 H 1.09002 * 109.46786 * 305.00259 * 8 5 4 36 36 H 0.96997 * 120.00010 * 359.97438 * 9 8 5 37 37 H 1.08000 * 119.81935 * 0.02798 * 13 12 10 38 38 H 1.07999 * 119.79363 * 180.21642 * 14 13 12 39 39 H 1.07995 * 119.98106 * 179.75957 * 15 14 13 40 40 H 0.96999 * 120.00061 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.20710 * 359.94835 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 0.0012 6 1 3.3491 3.4412 0.8430 7 8 3.3983 3.5459 -1.2198 8 6 5.3451 3.0607 0.1275 9 7 5.7131 4.4736 0.2482 10 6 7.0085 4.8244 0.3714 11 8 7.8719 3.9689 0.3774 12 6 7.3800 6.2507 0.4927 13 6 6.3875 7.2368 0.4737 14 6 6.7268 8.5726 0.5911 15 6 8.0460 8.9485 0.7183 16 6 9.0586 7.9711 0.7340 17 6 10.4140 8.3536 0.8649 18 1 11.1185 7.6901 1.3445 19 6 10.8422 9.5917 0.3731 20 7 11.9702 10.1067 0.7903 21 14 9.8033 10.5094 -0.8791 22 1 8.9402 11.4947 -0.1795 23 1 10.6915 11.2194 -1.8342 24 1 8.9521 9.5434 -1.6191 25 6 8.7158 6.6131 0.6203 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3635 0.5140 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.8339 0.9766 -0.8892 32 1 3.8332 0.9767 0.8907 33 1 3.7834 3.1482 -2.0126 34 1 5.8185 2.6362 -0.7579 35 1 5.6807 2.5209 1.0130 36 1 5.0244 5.1566 0.2388 37 1 5.3505 6.9531 0.3707 38 1 5.9530 9.3259 0.5788 39 1 8.3034 9.9937 0.8056 40 1 12.2669 10.9651 0.4497 41 1 9.4855 5.8556 0.6321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433361663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:53 Heat of formation + Delta-G solvation = -124.906632 kcal Electronic energy + Delta-G solvation = -22425.426553 eV Core-core repulsion = 18883.709662 eV Total energy + Delta-G solvation = -3541.716892 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.68926 -38.78533 -37.45857 -36.92698 -34.18952 -33.65382 -32.05127 -30.94607 -30.14196 -29.64928 -26.03012 -25.03563 -23.18471 -22.82045 -21.98365 -20.67628 -19.97966 -18.11020 -17.40657 -16.99784 -16.46608 -16.32752 -15.75690 -15.63304 -15.25017 -14.67038 -14.55542 -14.38622 -13.69747 -13.60373 -13.46228 -13.27522 -12.77628 -12.75084 -12.73790 -12.44536 -12.00191 -11.77442 -11.74289 -11.60353 -11.13637 -11.05128 -10.79098 -10.54808 -10.42228 -10.01531 -10.00649 -9.72650 -9.45880 -9.16163 -8.91992 -7.87447 -7.76278 -7.00744 -4.55573 1.89815 2.51570 2.97106 3.05749 3.17589 3.26134 3.59127 3.62824 3.93235 4.10948 4.48016 4.51886 4.61209 4.63131 4.69426 4.85859 4.97426 5.03514 5.11617 5.28931 5.31891 5.36935 5.51374 5.61068 5.72917 5.76341 5.88253 6.03826 6.38296 6.57229 6.66075 6.68801 6.79654 6.97327 7.20428 7.35761 7.40188 7.49796 7.74021 7.77972 7.99596 8.27767 8.52638 8.65071 8.71600 10.01374 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.041144 B = 0.002595 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.365193 B =10786.069736 C =11174.366250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.379 6.379 4 C 0.034 3.966 5 C 0.099 3.901 6 H 0.114 0.886 7 O -0.548 6.548 8 C 0.093 3.907 9 N -0.728 5.728 10 C 0.564 3.436 11 O -0.550 6.550 12 C -0.109 4.109 13 C -0.215 4.215 14 C -0.083 4.083 15 C -0.221 4.221 16 C 0.081 3.919 17 C -0.443 4.443 18 H 0.093 0.907 19 C 0.083 3.917 20 N -0.804 5.804 21 Si 0.911 3.089 22 H -0.269 1.269 23 H -0.289 1.289 24 H -0.244 1.244 25 C -0.136 4.136 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.376 0.624 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.406 0.594 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.286 0.714 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.888 -14.035 -2.840 22.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.298 6.298 4 C -0.044 4.044 5 C 0.040 3.960 6 H 0.132 0.868 7 O -0.353 6.353 8 C -0.032 4.032 9 N -0.382 5.382 10 C 0.355 3.645 11 O -0.429 6.429 12 C -0.112 4.112 13 C -0.235 4.235 14 C -0.101 4.101 15 C -0.240 4.240 16 C 0.078 3.922 17 C -0.471 4.471 18 H 0.111 0.889 19 C -0.136 4.136 20 N -0.427 5.427 21 Si 0.737 3.263 22 H -0.195 1.195 23 H -0.217 1.217 24 H -0.167 1.167 25 C -0.156 4.156 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.223 0.777 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.242 0.758 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.097 0.903 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -17.486 -13.960 -2.399 22.503 hybrid contribution -0.109 0.184 -0.802 0.830 sum -17.594 -13.776 -3.202 22.574 Atomic orbital electron populations 1.21737 0.93603 1.02214 1.03314 1.22491 0.95782 0.83781 1.00054 1.87957 1.20156 1.26282 1.95406 1.23123 0.82420 0.97437 1.01384 1.22133 0.92720 0.91904 0.89285 0.86840 1.86647 1.72180 1.61252 1.15195 1.21807 0.93947 0.84466 1.02997 1.45779 1.08670 1.07432 1.76347 1.18805 0.81382 0.89614 0.74720 1.90695 1.49194 1.52295 1.50667 1.19394 0.95082 0.90178 1.06533 1.20416 0.96354 0.92830 1.13856 1.20524 0.95645 0.94985 0.98994 1.21184 0.92793 0.98504 1.11552 1.17703 0.93608 0.90991 0.89898 1.19513 0.93740 1.01225 1.32597 0.88855 1.26171 0.95116 0.96251 0.96097 1.69691 1.20626 1.16859 1.35549 0.86310 0.79571 0.79846 0.80562 1.19535 1.21655 1.16681 1.21270 0.93631 0.96112 1.04592 0.91113 0.91778 0.91742 0.93421 0.93389 0.92597 0.91991 0.77696 0.91168 0.90617 0.75759 0.88454 0.88216 0.87867 0.90318 0.86679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.15 0.38 -0.55 16 2 C 0.06 0.40 6.66 37.15 0.25 0.64 16 3 O -0.38 -3.73 10.31 -40.09 -0.41 -4.14 16 4 C 0.03 0.28 5.57 37.16 0.21 0.48 16 5 C 0.10 0.94 3.28 -26.73 -0.09 0.85 16 6 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 7 O -0.55 -5.70 13.25 -40.09 -0.53 -6.23 16 8 C 0.09 1.05 5.31 -4.04 -0.02 1.03 16 9 N -0.73 -10.64 5.45 -61.24 -0.33 -10.97 16 10 C 0.56 10.99 7.77 -12.31 -0.10 10.89 16 11 O -0.55 -12.22 16.33 5.33 0.09 -12.13 16 12 C -0.11 -2.33 5.87 -105.04 -0.62 -2.95 16 13 C -0.21 -4.19 9.55 -38.92 -0.37 -4.56 16 14 C -0.08 -1.71 10.01 -39.73 -0.40 -2.11 16 15 C -0.22 -5.17 7.17 -38.81 -0.28 -5.44 16 16 C 0.08 2.05 5.10 -106.87 -0.55 1.50 16 17 C -0.44 -11.92 9.57 -37.73 -0.36 -12.28 16 18 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 19 C 0.08 2.15 5.40 -17.34 -0.09 2.06 16 20 N -0.80 -21.17 13.93 55.55 0.77 -20.40 16 21 Si 0.91 20.40 24.52 -169.99 -4.17 16.24 16 22 H -0.27 -5.79 6.71 56.52 0.38 -5.41 16 23 H -0.29 -6.26 7.11 56.52 0.40 -5.85 16 24 H -0.24 -5.60 6.86 56.52 0.39 -5.21 16 25 C -0.14 -3.28 9.34 -38.44 -0.36 -3.64 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.38 2.74 9.05 45.56 0.41 3.15 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.41 5.41 6.49 -40.82 -0.26 5.14 16 37 H 0.10 1.56 6.38 -52.49 -0.33 1.23 16 38 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.10 2.39 4.72 -52.49 -0.25 2.14 16 40 H 0.29 6.81 8.30 -40.82 -0.34 6.47 16 41 H 0.12 2.82 7.64 -52.49 -0.40 2.42 16 LS Contribution 345.45 15.07 5.21 5.21 Total: -1.00 -30.95 345.45 -6.85 -37.80 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -5.08 Total: 8.71 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -2.39 Total: -14.07 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.44 Total: -31.37 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.86 Total: -22.51 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.17 Total: 16.24 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.95 -6.85 -37.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433361663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.107 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds