Wall clock time and date at job start Tue Mar 31 2020 03:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.46830 * 2 1 4 4 C 1.42902 * 113.99672 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46865 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.46904 * 55.00382 * 5 4 3 7 7 O 1.42896 * 109.47320 * 295.00450 * 5 4 3 8 8 C 1.53003 * 109.47015 * 175.00276 * 5 4 3 9 9 N 1.46499 * 109.47169 * 185.00517 * 8 5 4 10 10 C 1.34771 * 119.99932 * 180.02562 * 9 8 5 11 11 O 1.21544 * 120.00201 * 0.26790 * 10 9 8 12 12 C 1.47891 * 119.99812 * 179.97438 * 10 9 8 13 13 C 1.39916 * 120.02791 * 359.71426 * 12 10 9 14 14 C 1.38326 * 120.36040 * 179.78548 * 13 12 10 15 15 C 1.37757 * 120.41212 * 0.47888 * 14 13 12 16 16 C 1.40743 * 120.03642 * 359.77962 * 15 14 13 17 17 C 1.41441 * 120.17666 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00072 * 150.18213 * 17 16 15 19 19 C 1.39936 * 119.99950 * 330.17731 * 17 16 15 20 20 N 1.30829 * 119.99907 * 161.72795 * 19 17 16 21 21 Si 1.86801 * 120.00302 * 341.73253 * 19 17 16 22 22 H 1.48498 * 109.47383 * 95.40495 * 21 19 17 23 23 H 1.48500 * 109.47273 * 215.41104 * 21 19 17 24 24 H 1.48500 * 109.46877 * 335.41022 * 21 19 17 25 25 C 1.38995 * 120.02353 * 179.97438 * 12 10 9 26 26 H 1.08995 * 109.47122 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47071 * 299.99203 * 1 2 3 28 28 H 1.09002 * 109.47847 * 59.99137 * 1 2 3 29 29 H 1.09002 * 109.47071 * 240.00797 * 2 1 3 30 30 H 1.08992 * 109.47562 * 120.00407 * 2 1 3 31 31 H 1.09002 * 109.47207 * 60.00703 * 4 3 2 32 32 H 1.08994 * 109.47598 * 300.00408 * 4 3 2 33 33 H 0.96704 * 113.99827 * 299.99909 * 7 5 4 34 34 H 1.08998 * 109.46933 * 64.99883 * 8 5 4 35 35 H 1.09002 * 109.46786 * 305.00259 * 8 5 4 36 36 H 0.96997 * 120.00010 * 359.97438 * 9 8 5 37 37 H 1.08000 * 119.81935 * 0.02798 * 13 12 10 38 38 H 1.07999 * 119.79363 * 180.21642 * 14 13 12 39 39 H 1.07995 * 119.98106 * 179.75957 * 15 14 13 40 40 H 0.96999 * 120.00061 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.20710 * 359.94835 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 0.0012 6 1 3.3491 3.4412 0.8430 7 8 3.3983 3.5459 -1.2198 8 6 5.3451 3.0607 0.1275 9 7 5.7131 4.4736 0.2482 10 6 7.0085 4.8244 0.3714 11 8 7.8719 3.9689 0.3774 12 6 7.3800 6.2507 0.4927 13 6 6.3875 7.2368 0.4737 14 6 6.7268 8.5726 0.5911 15 6 8.0460 8.9485 0.7183 16 6 9.0586 7.9711 0.7340 17 6 10.4140 8.3536 0.8649 18 1 11.1185 7.6901 1.3445 19 6 10.8422 9.5917 0.3731 20 7 11.9702 10.1067 0.7903 21 14 9.8033 10.5094 -0.8791 22 1 8.9402 11.4947 -0.1795 23 1 10.6915 11.2194 -1.8342 24 1 8.9521 9.5434 -1.6191 25 6 8.7158 6.6131 0.6203 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3635 0.5140 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.8339 0.9766 -0.8892 32 1 3.8332 0.9767 0.8907 33 1 3.7834 3.1482 -2.0126 34 1 5.8185 2.6362 -0.7579 35 1 5.6807 2.5209 1.0130 36 1 5.0244 5.1566 0.2388 37 1 5.3505 6.9531 0.3707 38 1 5.9530 9.3259 0.5788 39 1 8.3034 9.9937 0.8056 40 1 12.2669 10.9651 0.4497 41 1 9.4855 5.8556 0.6321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433361663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:53 Heat of formation + Delta-G solvation = -148.934920 kcal Electronic energy + Delta-G solvation = -22426.468498 eV Core-core repulsion = 18883.709662 eV Total energy + Delta-G solvation = -3542.758836 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.10149 -39.67164 -38.99905 -37.83710 -35.65433 -35.31303 -32.83503 -32.40009 -31.81209 -30.69522 -27.37355 -26.56298 -24.31632 -23.69156 -22.87101 -22.41618 -21.54837 -19.68425 -18.44487 -17.98023 -17.68174 -17.30953 -17.09853 -16.69747 -16.50949 -16.37515 -15.66281 -15.54456 -15.17350 -15.04425 -14.56889 -14.42883 -14.22097 -13.95726 -13.83552 -13.49098 -13.30249 -13.17223 -12.84363 -12.67985 -12.36177 -12.30221 -12.25565 -11.84335 -11.75409 -11.57647 -11.29080 -11.13782 -10.81806 -10.59004 -10.22586 -9.63410 -9.56125 -8.91818 -6.55574 0.16947 0.73755 1.25783 1.41598 1.48590 1.93609 1.99746 2.12628 2.64657 2.72466 3.41582 3.45322 3.75555 3.85433 3.96346 4.02287 4.17299 4.26053 4.33473 4.36373 4.41509 4.49199 4.50885 4.55121 4.66683 4.86710 4.88541 4.91312 4.97376 5.04731 5.15340 5.27672 5.35144 5.42068 5.64369 5.71567 5.84254 6.09708 6.22433 6.29474 6.52835 6.65348 6.73975 6.75670 7.19822 8.17072 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.041144 B = 0.002595 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.365193 B =10786.069736 C =11174.366250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.403 6.403 4 C 0.034 3.966 5 C 0.112 3.888 6 H 0.112 0.888 7 O -0.563 6.563 8 C 0.091 3.909 9 N -0.706 5.706 10 C 0.563 3.437 11 O -0.585 6.585 12 C -0.114 4.114 13 C -0.183 4.183 14 C -0.083 4.083 15 C -0.224 4.224 16 C 0.064 3.936 17 C -0.488 4.488 18 H 0.050 0.950 19 C 0.045 3.955 20 N -0.848 5.848 21 Si 0.968 3.032 22 H -0.247 1.247 23 H -0.277 1.277 24 H -0.252 1.252 25 C -0.166 4.166 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.388 0.612 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.415 0.585 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.107 0.893 40 H 0.295 0.705 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.149 -14.200 -3.857 26.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.323 6.323 4 C -0.043 4.043 5 C 0.052 3.948 6 H 0.130 0.870 7 O -0.370 6.370 8 C -0.033 4.033 9 N -0.359 5.359 10 C 0.352 3.648 11 O -0.467 6.467 12 C -0.117 4.117 13 C -0.202 4.202 14 C -0.101 4.101 15 C -0.244 4.244 16 C 0.062 3.938 17 C -0.517 4.517 18 H 0.069 0.931 19 C -0.170 4.170 20 N -0.474 5.474 21 Si 0.790 3.210 22 H -0.172 1.172 23 H -0.204 1.204 24 H -0.176 1.176 25 C -0.187 4.187 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.238 0.762 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.254 0.746 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.124 0.876 40 H 0.106 0.894 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.793 -14.139 -3.415 26.201 hybrid contribution 0.979 0.028 -0.457 1.081 sum -20.814 -14.111 -3.872 25.442 Atomic orbital electron populations 1.21765 0.93175 1.03282 1.02602 1.22674 0.96223 0.82850 1.00981 1.87912 1.20896 1.27903 1.95620 1.23118 0.82026 0.96471 1.02689 1.21971 0.90798 0.92949 0.89067 0.87038 1.86613 1.72506 1.61888 1.16002 1.22013 0.95601 0.82223 1.03418 1.45604 1.06895 1.09381 1.74005 1.18550 0.82700 0.88455 0.75073 1.90687 1.50625 1.52817 1.52529 1.19692 0.94339 0.92264 1.05385 1.21000 0.98108 0.91991 1.09114 1.21042 0.95306 0.96532 0.97204 1.21386 0.93775 0.98214 1.11016 1.17791 0.93398 0.92016 0.90609 1.19452 0.94443 1.02062 1.35765 0.93138 1.26904 0.96278 0.96573 0.97229 1.69723 1.22350 1.17982 1.37341 0.85463 0.78417 0.78797 0.78358 1.17173 1.20373 1.17564 1.21206 0.94928 0.95464 1.07055 0.89207 0.92431 0.92465 0.92451 0.92461 0.91160 0.90884 0.76196 0.90707 0.90296 0.74616 0.83609 0.83586 0.87575 0.89432 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 71.98 0.74 -0.83 16 2 C 0.05 0.58 6.66 71.98 0.48 1.06 16 3 O -0.40 -6.95 10.31 -144.34 -1.49 -8.44 16 4 C 0.03 0.45 5.57 71.98 0.40 0.86 16 5 C 0.11 1.75 3.28 30.60 0.10 1.86 16 6 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 7 O -0.56 -9.82 13.25 -144.34 -1.91 -11.73 16 8 C 0.09 1.81 5.31 86.38 0.46 2.27 16 9 N -0.71 -18.36 5.45 -465.94 -2.54 -20.90 16 10 C 0.56 21.04 7.77 86.80 0.67 21.72 16 11 O -0.58 -26.03 16.33 -3.85 -0.06 -26.09 16 12 C -0.11 -4.70 5.87 -20.13 -0.12 -4.82 16 13 C -0.18 -6.31 9.55 22.70 0.22 -6.10 16 14 C -0.08 -3.04 10.01 22.18 0.22 -2.81 16 15 C -0.22 -10.13 7.17 22.77 0.16 -9.97 16 16 C 0.06 3.35 5.10 -21.32 -0.11 3.24 16 17 C -0.49 -28.16 9.57 23.47 0.22 -27.94 16 18 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 19 C 0.04 2.41 5.40 85.25 0.46 2.87 16 20 N -0.85 -46.93 13.93 21.82 0.30 -46.62 16 21 Si 0.97 41.92 24.52 68.60 1.68 43.60 16 22 H -0.25 -9.74 6.71 99.48 0.67 -9.07 16 23 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.25 -11.12 6.86 99.48 0.68 -10.44 16 25 C -0.17 -8.29 9.34 23.01 0.21 -8.08 16 26 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.39 4.41 9.05 -74.05 -0.67 3.74 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.42 9.13 6.49 -92.71 -0.60 8.53 16 37 H 0.15 3.67 6.38 -2.91 -0.02 3.65 16 38 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 39 H 0.11 4.70 4.72 -2.91 -0.01 4.69 16 40 H 0.30 14.55 8.30 -92.71 -0.77 13.78 16 41 H 0.09 4.84 7.64 -2.91 -0.02 4.82 16 Total: -1.00 -71.12 345.45 -0.17 -71.29 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: -0.28 Total: 25.57 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: 4.13 Total: -26.68 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: -2.24 Total: -67.52 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -3.46 Total: -46.26 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.68 Total: 43.60 kcal Total: -71.12 -0.17 -71.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433361663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.649 kcal (2) G-P(sol) polarization free energy of solvation -71.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds