Wall clock time and date at job start Tue Mar 31 2020 03:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35445 * 126.77592 * 2 1 4 4 C 1.41374 * 103.98900 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.80447 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.90678 * 325.70036 * 5 4 3 7 7 C 1.53994 * 109.91780 * 86.80455 * 5 4 3 8 8 C 1.54590 * 105.14312 * 120.77648 * 7 5 4 9 9 C 1.54940 * 102.92203 * 21.95574 * 8 7 5 10 10 N 1.47900 * 110.08124 * 204.49131 * 5 4 3 11 11 C 1.46898 * 111.00131 * 94.71022 * 10 5 4 12 12 C 1.50700 * 109.47287 * 169.99872 * 11 10 5 13 13 O 1.21283 * 120.00027 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00424 * 180.02562 * 12 11 10 15 15 C 1.46492 * 120.00319 * 180.02562 * 14 12 11 16 16 C 1.50704 * 109.47022 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00099 * 359.97438 * 16 15 14 18 18 C 1.37886 * 119.99845 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00094 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99697 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47132 * 89.99932 * 20 18 16 22 22 H 1.48500 * 109.47001 * 209.99544 * 20 18 16 23 23 H 1.48500 * 109.47559 * 329.99639 * 20 18 16 24 24 N 1.30180 * 106.39304 * 0.26313 * 4 3 2 25 25 O 1.20926 * 111.60318 * 359.53416 * 24 4 3 26 26 H 1.08999 * 109.47123 * 90.00080 * 1 2 3 27 27 H 1.09008 * 109.46687 * 209.99603 * 1 2 3 28 28 H 1.08994 * 109.47223 * 329.99547 * 1 2 3 29 29 H 1.08002 * 128.00369 * 359.94656 * 3 2 1 30 30 H 1.09005 * 110.30831 * 239.69098 * 7 5 4 31 31 H 1.09000 * 110.30875 * 1.85720 * 7 5 4 32 32 H 1.09004 * 110.72830 * 140.31216 * 8 7 5 33 33 H 1.08997 * 110.72586 * 263.59819 * 8 7 5 34 34 H 1.08998 * 110.66967 * 81.01745 * 9 8 7 35 35 H 1.09004 * 110.66927 * 203.99015 * 9 8 7 36 36 H 1.08992 * 109.47233 * 289.99929 * 11 10 5 37 37 H 1.08998 * 109.47153 * 50.00222 * 11 10 5 38 38 H 0.97005 * 119.99514 * 359.97438 * 14 12 11 39 39 H 1.08998 * 109.47411 * 299.99891 * 15 14 12 40 40 H 1.09002 * 109.47460 * 60.00418 * 15 14 12 41 41 H 0.96998 * 120.00285 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 0.0006 5 6 4.9210 1.3001 0.0014 6 1 4.8129 2.2183 -0.5761 7 6 5.3319 1.6351 1.4473 8 6 6.7141 0.9698 1.6387 9 6 7.2278 0.8137 0.1853 10 7 5.9991 0.4670 -0.5740 11 6 6.1702 0.7432 -2.0066 12 6 7.4232 0.0684 -2.5022 13 8 8.1062 -0.5793 -1.7374 14 7 7.7848 0.1845 -3.7954 15 6 9.0025 -0.4719 -4.2772 16 6 9.1787 -0.1874 -5.7467 17 1 8.4557 0.4211 -6.2694 18 6 10.2625 -0.7050 -6.4240 19 7 11.1427 -1.4465 -5.7876 20 14 10.4804 -0.3530 -8.2455 21 1 11.2796 0.8868 -8.4179 22 1 11.1864 -1.4903 -8.8884 23 1 9.1488 -0.1755 -8.8783 24 7 3.4764 -0.7563 -0.0048 25 8 2.3095 -1.0736 0.0006 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 2.0344 2.1270 -0.0008 30 1 5.4102 2.7144 1.5779 31 1 4.6111 1.2193 2.1513 32 1 7.3767 1.6158 2.2147 33 1 6.6106 -0.0037 2.1179 34 1 7.6515 1.7508 -0.1757 35 1 7.9622 0.0108 0.1210 36 1 5.3099 0.3605 -2.5556 37 1 6.2512 1.8190 -2.1621 38 1 7.2383 0.7023 -4.4071 39 1 9.8630 -0.0899 -3.7279 40 1 8.9210 -1.5478 -4.1224 41 1 11.9053 -1.8103 -6.2640 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027887852.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:40 Heat of formation + Delta-G solvation = 31.220882 kcal Electronic energy + Delta-G solvation = -23235.155242 eV Core-core repulsion = 19732.501298 eV Total energy + Delta-G solvation = -3502.653944 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.93316 -39.70090 -37.98456 -34.35421 -34.07751 -33.26748 -32.45678 -32.07677 -28.84681 -27.97386 -27.84921 -25.82352 -23.39540 -22.66370 -22.05182 -21.11452 -19.68480 -19.42382 -17.66026 -17.35452 -16.98379 -16.00963 -15.97418 -15.30836 -14.91709 -14.90481 -14.24382 -14.15267 -13.97795 -13.65982 -13.54564 -13.20277 -12.86837 -12.67231 -12.49810 -12.25712 -11.96978 -11.94677 -11.75628 -11.29642 -11.11080 -11.02381 -10.89649 -10.77299 -10.68018 -10.28237 -10.02991 -9.38955 -9.37690 -8.92115 -8.72882 -8.32475 -7.85120 -6.16049 -4.22993 1.43455 2.20207 3.05710 3.24261 3.30306 3.32907 3.37625 3.62226 4.04928 4.21572 4.37901 4.51743 4.62119 4.80522 4.82998 4.90321 5.05693 5.08278 5.19434 5.19942 5.28895 5.34473 5.43901 5.45939 5.58910 5.60563 5.68103 5.69016 5.79948 5.89071 5.97953 6.18874 6.43522 6.95202 6.98024 7.32991 7.46976 7.53258 7.67938 7.97808 8.36448 8.63456 8.79256 9.12444 9.43639 10.94200 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021082 B = 0.003136 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.853453 B = 8927.595184 C = 9787.748705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.043 4.043 3 C -0.235 4.235 4 C 0.029 3.971 5 C 0.140 3.860 6 H 0.073 0.927 7 C -0.118 4.118 8 C -0.124 4.124 9 C 0.035 3.965 10 N -0.486 5.486 11 C 0.028 3.972 12 C 0.500 3.500 13 O -0.539 6.539 14 N -0.713 5.713 15 C 0.252 3.748 16 C -0.544 4.544 17 H 0.062 0.938 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 N -0.326 5.326 25 O 0.098 5.902 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.167 0.833 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.040 0.960 35 H 0.120 0.880 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.389 0.611 39 H 0.026 0.974 40 H 0.027 0.973 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.487 9.226 13.402 26.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.107 4.107 3 C -0.257 4.257 4 C -0.131 4.131 5 C 0.030 3.970 6 H 0.091 0.909 7 C -0.157 4.157 8 C -0.163 4.163 9 C -0.092 4.092 10 N -0.210 5.210 11 C -0.103 4.103 12 C 0.284 3.716 13 O -0.417 6.417 14 N -0.362 5.362 15 C 0.131 3.869 16 C -0.582 4.582 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 N -0.027 5.027 25 O 0.029 5.971 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.185 0.815 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.137 0.863 36 H 0.114 0.886 37 H 0.077 0.923 38 H 0.222 0.778 39 H 0.044 0.956 40 H 0.045 0.955 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.032 7.038 13.923 24.609 hybrid contribution -0.319 2.118 -1.583 2.663 sum -19.352 9.156 12.339 24.710 Atomic orbital electron populations 1.20295 0.84368 1.04367 1.03962 1.24482 0.96352 0.86549 1.03279 1.22315 0.91353 1.00789 1.11202 1.23331 0.96001 0.90165 1.03606 1.20695 0.87046 0.92544 0.96718 0.90906 1.22398 0.98178 1.00699 0.94409 1.22548 0.95119 1.01137 0.97450 1.23529 0.93055 1.01403 0.91163 1.64400 1.04426 1.51073 1.01112 1.22249 0.98541 0.98995 0.90563 1.20181 0.86185 0.82010 0.83206 1.90590 1.54659 1.41572 1.54927 1.46430 1.28476 1.52619 1.08660 1.19089 0.80762 0.93154 0.93906 1.21229 1.09668 1.33508 0.93787 0.91943 1.24955 0.95448 0.94683 0.98941 1.69971 1.12633 1.33051 1.36602 0.86414 0.78345 0.77950 0.84191 1.20478 1.20974 1.19744 1.74035 0.95335 1.16222 1.17087 1.84928 1.11707 1.33225 1.67237 0.89569 0.89962 0.89330 0.81519 0.90798 0.91024 0.90906 0.90671 0.94208 0.86263 0.88632 0.92280 0.77825 0.95586 0.95501 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.45 36.01 0.38 0.03 16 2 C -0.04 -0.40 7.49 -35.30 -0.26 -0.67 16 3 C -0.23 -2.28 11.05 -39.39 -0.44 -2.71 16 4 C 0.03 0.38 6.07 -82.10 -0.50 -0.12 16 5 C 0.14 1.73 2.97 -67.80 -0.20 1.53 16 6 H 0.07 0.78 7.57 -51.93 -0.39 0.38 16 7 C -0.12 -1.25 6.56 -25.38 -0.17 -1.41 16 8 C -0.12 -1.50 7.06 -24.87 -0.18 -1.67 16 9 C 0.04 0.54 5.30 -1.89 -0.01 0.53 16 10 N -0.49 -7.68 4.76 -225.38 -1.07 -8.76 16 11 C 0.03 0.44 5.52 -4.98 -0.03 0.42 16 12 C 0.50 10.34 7.54 -10.99 -0.08 10.26 16 13 O -0.54 -13.10 13.52 5.56 0.08 -13.03 16 14 N -0.71 -15.40 5.55 -61.48 -0.34 -15.74 16 15 C 0.25 6.79 5.43 -5.20 -0.03 6.76 16 16 C -0.54 -14.96 9.28 -34.44 -0.32 -15.28 16 17 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 20 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 N -0.33 -5.01 11.91 33.42 0.40 -4.61 16 25 O 0.10 1.28 11.20 17.18 0.19 1.47 16 26 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 28 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.75 7.68 -51.93 -0.40 0.35 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.04 0.59 8.02 -51.93 -0.42 0.17 16 35 H 0.12 2.24 5.98 -51.93 -0.31 1.93 16 36 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 37 H 0.06 0.78 7.81 -51.93 -0.41 0.38 16 38 H 0.39 7.21 8.32 -40.82 -0.34 6.87 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 343.86 15.07 5.18 5.18 Total: -1.00 -34.36 343.86 -7.81 -42.17 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.03 Total: 3.60 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -1.93 Total: -0.66 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.28 Total: -54.77 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.27 Total: -11.56 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.36 -7.81 -42.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027887852.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.388 kcal (2) G-P(sol) polarization free energy of solvation -34.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds