Wall clock time and date at job start Tue Mar 31 2020 03:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50695 * 109.47131 * 2 1 4 4 N 1.30354 * 119.40072 * 0.02562 * 3 2 1 5 5 N 1.28193 * 123.69265 * 180.02562 * 4 3 2 6 6 H 0.97005 * 119.09553 * 179.97438 * 5 4 3 7 7 C 1.34815 * 121.80923 * 0.02562 * 5 4 3 8 8 O 1.21899 * 120.77992 * 180.02562 * 7 5 4 9 9 C 1.46829 * 118.45238 * 359.97438 * 7 5 4 10 10 C 1.47255 * 121.54459 * 179.97438 * 9 7 5 11 11 O 1.21657 * 119.99618 * 80.59332 * 10 9 7 12 12 N 1.34768 * 119.99827 * 260.31842 * 10 9 7 13 13 C 1.36793 * 120.00094 * 175.44795 * 12 10 9 14 14 H 1.08007 * 119.99462 * 4.92693 * 13 12 10 15 15 C 1.39095 * 120.00406 * 184.92972 * 13 12 10 16 16 N 1.31336 * 119.99774 * 28.26617 * 15 13 12 17 17 Si 1.86797 * 120.00034 * 208.26406 * 15 13 12 18 18 H 1.48491 * 109.47362 * 60.00159 * 17 15 13 19 19 H 1.48507 * 109.47019 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46876 * 299.99646 * 17 15 13 21 21 C 1.46504 * 120.00531 * 355.44495 * 12 10 9 22 22 C 1.53000 * 109.46823 * 89.55610 * 21 12 10 23 23 C 1.39535 * 116.90632 * 0.25012 * 9 7 5 24 24 C 1.50697 * 121.02805 * 179.75444 * 23 9 7 25 25 C 1.52996 * 109.47814 * 92.51938 * 24 23 9 26 26 H 1.08999 * 109.47288 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46834 * 299.99779 * 1 2 3 28 28 H 1.08999 * 109.47071 * 59.99974 * 1 2 3 29 29 H 1.09001 * 109.47049 * 239.99480 * 2 1 3 30 30 H 1.08997 * 109.46623 * 120.00285 * 2 1 3 31 31 H 0.96998 * 120.00009 * 179.97438 * 16 15 13 32 32 H 1.08993 * 109.47316 * 209.55871 * 21 12 10 33 33 H 1.09002 * 109.46545 * 329.56004 * 21 12 10 34 34 H 1.08993 * 109.47388 * 300.00217 * 22 21 12 35 35 H 1.08997 * 109.46914 * 60.00468 * 22 21 12 36 36 H 1.08993 * 109.46859 * 180.02562 * 22 21 12 37 37 H 1.08999 * 109.46765 * 212.52372 * 24 23 9 38 38 H 1.09003 * 109.47215 * 332.51661 * 24 23 9 39 39 H 1.08999 * 109.47309 * 300.00101 * 25 24 23 40 40 H 1.09003 * 109.46956 * 59.99564 * 25 24 23 41 41 H 1.08996 * 109.47514 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.1750 2.4027 0.0005 5 7 1.5106 3.6399 0.0001 6 1 0.8161 4.3170 0.0001 7 6 2.8024 4.0257 -0.0015 8 8 3.1004 5.2077 -0.0014 9 6 3.8421 2.9889 -0.0021 10 6 5.2738 3.3336 -0.0043 11 8 5.8262 3.6442 1.0341 12 7 5.9732 3.2996 -1.1558 13 6 7.2783 3.7089 -1.1756 14 1 7.7721 3.9836 -0.2552 15 6 7.9695 3.7712 -2.3811 16 7 7.3186 3.9904 -3.5006 17 14 9.8233 3.5434 -2.4077 18 1 10.1652 2.2032 -1.8672 19 1 10.3157 3.6547 -3.8043 20 1 10.4629 4.5918 -1.5728 21 6 5.3359 2.8244 -2.3864 22 6 4.6782 4.0024 -3.1078 23 6 3.4107 1.6620 -0.0065 24 6 4.3986 0.5240 -0.0130 25 6 4.6881 0.0915 1.4257 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 7.8006 4.0343 -4.3412 32 1 6.0879 2.3752 -3.0349 33 1 4.5782 2.0808 -2.1392 34 1 3.9261 4.4516 -2.4593 35 1 5.4359 4.7460 -3.3549 36 1 4.2037 3.6488 -4.0231 37 1 3.9812 -0.3162 -0.5680 38 1 5.3243 0.8491 -0.4879 39 1 5.1054 0.9316 1.9807 40 1 3.7624 -0.2337 1.9006 41 1 5.4022 -0.7319 1.4209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271037672.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:32 Heat of formation + Delta-G solvation = -9.092231 kcal Electronic energy + Delta-G solvation = -25137.172861 eV Core-core repulsion = 21632.770810 eV Total energy + Delta-G solvation = -3504.402051 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.55550 -38.59410 -37.76080 -35.77164 -35.07411 -33.62253 -31.83784 -30.83015 -29.61103 -29.42715 -26.34607 -24.95614 -24.36530 -22.66931 -21.97996 -21.40348 -20.07386 -18.15162 -17.58945 -16.83128 -16.27394 -15.95923 -15.56729 -14.78954 -14.55598 -14.50187 -14.19325 -14.02055 -13.54162 -13.15360 -12.85638 -12.76452 -12.65887 -12.37199 -12.20854 -11.89927 -11.64898 -11.41694 -11.34952 -11.25838 -11.12794 -11.08031 -10.81739 -10.54130 -10.42409 -10.22277 -9.89405 -9.67568 -9.51182 -8.93541 -8.56720 -8.07201 -7.84549 -6.42499 -3.80310 0.72946 1.86529 2.67102 3.14223 3.23080 3.27326 3.55112 3.65810 4.07375 4.30703 4.50297 4.69162 4.86922 4.99452 5.03366 5.13774 5.31593 5.39357 5.49206 5.55219 5.70604 5.78128 5.87277 5.97057 5.98772 6.08817 6.11719 6.18487 6.21579 6.40040 6.46619 6.53960 6.59497 6.65344 6.77534 7.18161 7.42740 7.80369 7.93127 8.01750 8.39586 8.44824 9.10176 9.34073 9.90254 10.54663 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019968 B = 0.005689 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.873568 B = 4920.512652 C = 5296.048145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.058 4.058 3 C 0.081 3.919 4 N -0.235 5.235 5 N -0.454 5.454 6 H 0.435 0.565 7 C 0.493 3.507 8 O -0.509 6.509 9 C -0.132 4.132 10 C 0.494 3.506 11 O -0.578 6.578 12 N -0.419 5.419 13 C -0.311 4.311 14 H 0.109 0.891 15 C 0.036 3.964 16 N -0.853 5.853 17 Si 0.919 3.081 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.122 3.878 22 C -0.152 4.152 23 C -0.041 4.041 24 C -0.092 4.092 25 C -0.144 4.144 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.270 0.730 32 H 0.095 0.905 33 H 0.033 0.967 34 H 0.019 0.981 35 H 0.106 0.894 36 H 0.033 0.967 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.486 -11.150 1.352 16.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.096 4.096 3 C -0.092 4.092 4 N -0.058 5.058 5 N -0.201 5.201 6 H 0.280 0.720 7 C 0.287 3.713 8 O -0.383 6.383 9 C -0.148 4.148 10 C 0.281 3.719 11 O -0.463 6.463 12 N -0.136 5.136 13 C -0.438 4.438 14 H 0.126 0.874 15 C -0.169 4.169 16 N -0.492 5.492 17 Si 0.745 3.255 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.001 4.001 22 C -0.210 4.210 23 C -0.047 4.047 24 C -0.130 4.130 25 C -0.202 4.202 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.051 0.949 34 H 0.038 0.962 35 H 0.124 0.876 36 H 0.052 0.948 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.729 -10.109 1.615 15.568 hybrid contribution 1.167 0.444 -0.323 1.290 sum -10.562 -9.665 1.292 14.375 Atomic orbital electron populations 1.21601 0.94187 1.01140 1.02981 1.20378 0.97089 0.88711 1.03468 1.21365 0.89038 0.95252 1.03549 1.70263 1.33286 0.90526 1.11705 1.44549 1.08835 1.04485 1.62233 0.72001 1.19186 0.82922 0.90085 0.79145 1.90988 1.80590 1.17299 1.49466 1.22926 0.96587 0.91821 1.03494 1.16782 0.83523 0.86210 0.85364 1.90648 1.69398 1.54399 1.31810 1.43705 1.10845 1.53085 1.05930 1.19701 0.84948 1.43682 0.95439 0.87363 1.25249 1.00593 0.96328 0.94722 1.70131 1.36581 1.43147 0.99296 0.86103 0.82711 0.79476 0.77175 1.19813 1.20975 1.19709 1.21471 0.96177 0.95536 0.86918 1.22239 1.00333 1.01096 0.97349 1.21338 0.94297 0.94652 0.94374 1.20692 0.98280 0.94885 0.99107 1.21709 1.01355 1.02057 0.95039 0.92658 0.92221 0.92147 0.89423 0.89436 0.91986 0.88643 0.94874 0.96178 0.87581 0.94757 0.89903 0.89176 0.91563 0.92735 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.12 37.16 0.34 -0.83 16 2 C -0.06 -0.53 5.15 -27.88 -0.14 -0.68 16 3 C 0.08 1.11 6.76 -82.59 -0.56 0.55 16 4 N -0.23 -3.29 9.94 33.61 0.33 -2.95 16 5 N -0.45 -7.13 6.16 30.34 0.19 -6.94 16 6 H 0.44 5.49 8.92 -190.60 -1.70 3.79 16 7 C 0.49 10.32 7.28 -12.77 -0.09 10.22 16 8 O -0.51 -12.60 17.55 5.01 0.09 -12.51 16 9 C -0.13 -2.83 4.40 -102.28 -0.45 -3.28 16 10 C 0.49 12.82 5.62 -12.60 -0.07 12.75 16 11 O -0.58 -17.06 16.69 5.23 0.09 -16.97 16 12 N -0.42 -10.85 2.40 -116.10 -0.28 -11.13 16 13 C -0.31 -8.59 9.43 -15.02 -0.14 -8.73 16 14 H 0.11 3.18 7.31 -52.48 -0.38 2.80 16 15 C 0.04 0.91 4.86 -17.45 -0.08 0.82 16 16 N -0.85 -21.53 8.31 55.50 0.46 -21.07 16 17 Si 0.92 20.02 29.64 -169.99 -5.04 14.99 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 C 0.12 2.78 4.67 -4.04 -0.02 2.76 16 22 C -0.15 -3.48 9.68 37.16 0.36 -3.12 16 23 C -0.04 -0.67 4.25 -103.51 -0.44 -1.11 16 24 C -0.09 -1.33 4.89 -27.89 -0.14 -1.46 16 25 C -0.14 -1.91 9.89 37.16 0.37 -1.54 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.52 8.05 -51.93 -0.42 0.11 16 28 H 0.06 0.53 8.05 -51.93 -0.42 0.12 16 29 H 0.09 0.69 7.54 -51.93 -0.39 0.30 16 30 H 0.09 0.70 7.17 -51.93 -0.37 0.32 16 31 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 32 H 0.10 2.24 6.11 -51.93 -0.32 1.93 16 33 H 0.03 0.66 5.28 -51.93 -0.27 0.39 16 34 H 0.02 0.46 7.19 -51.93 -0.37 0.09 16 35 H 0.11 2.73 5.90 -51.93 -0.31 2.42 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.89 6.86 -51.93 -0.36 0.54 16 38 H 0.09 1.57 6.14 -51.93 -0.32 1.25 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.59 7.17 -51.93 -0.37 0.22 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 330.62 15.07 4.98 4.98 Total: -1.00 -33.42 330.62 -7.08 -40.49 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.83 Total: 4.75 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -1.07 Total: 6.36 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.70 Total: -42.09 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: 0.18 Total: -29.48 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.04 Total: 14.99 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.42 -7.08 -40.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271037672.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.402 kcal (2) G-P(sol) polarization free energy of solvation -33.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds