Wall clock time and date at job start Tue Mar 31 2020 03:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50695 * 109.47131 * 2 1 4 4 N 1.30354 * 119.40072 * 0.02562 * 3 2 1 5 5 N 1.28193 * 123.69265 * 180.02562 * 4 3 2 6 6 H 0.97005 * 119.09553 * 179.97438 * 5 4 3 7 7 C 1.34815 * 121.80923 * 0.02562 * 5 4 3 8 8 O 1.21899 * 120.77992 * 180.02562 * 7 5 4 9 9 C 1.46829 * 118.45238 * 359.97438 * 7 5 4 10 10 C 1.47255 * 121.54459 * 179.97438 * 9 7 5 11 11 O 1.21657 * 119.99618 * 80.59332 * 10 9 7 12 12 N 1.34768 * 119.99827 * 260.31842 * 10 9 7 13 13 C 1.36793 * 120.00094 * 175.44795 * 12 10 9 14 14 H 1.08007 * 119.99462 * 4.92693 * 13 12 10 15 15 C 1.39095 * 120.00406 * 184.92972 * 13 12 10 16 16 N 1.31336 * 119.99774 * 28.26617 * 15 13 12 17 17 Si 1.86797 * 120.00034 * 208.26406 * 15 13 12 18 18 H 1.48491 * 109.47362 * 60.00159 * 17 15 13 19 19 H 1.48507 * 109.47019 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46876 * 299.99646 * 17 15 13 21 21 C 1.46504 * 120.00531 * 355.44495 * 12 10 9 22 22 C 1.53000 * 109.46823 * 89.55610 * 21 12 10 23 23 C 1.39535 * 116.90632 * 0.25012 * 9 7 5 24 24 C 1.50697 * 121.02805 * 179.75444 * 23 9 7 25 25 C 1.52996 * 109.47814 * 92.51938 * 24 23 9 26 26 H 1.08999 * 109.47288 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46834 * 299.99779 * 1 2 3 28 28 H 1.08999 * 109.47071 * 59.99974 * 1 2 3 29 29 H 1.09001 * 109.47049 * 239.99480 * 2 1 3 30 30 H 1.08997 * 109.46623 * 120.00285 * 2 1 3 31 31 H 0.96998 * 120.00009 * 179.97438 * 16 15 13 32 32 H 1.08993 * 109.47316 * 209.55871 * 21 12 10 33 33 H 1.09002 * 109.46545 * 329.56004 * 21 12 10 34 34 H 1.08993 * 109.47388 * 300.00217 * 22 21 12 35 35 H 1.08997 * 109.46914 * 60.00468 * 22 21 12 36 36 H 1.08993 * 109.46859 * 180.02562 * 22 21 12 37 37 H 1.08999 * 109.46765 * 212.52372 * 24 23 9 38 38 H 1.09003 * 109.47215 * 332.51661 * 24 23 9 39 39 H 1.08999 * 109.47309 * 300.00101 * 25 24 23 40 40 H 1.09003 * 109.46956 * 59.99564 * 25 24 23 41 41 H 1.08996 * 109.47514 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.1750 2.4027 0.0005 5 7 1.5106 3.6399 0.0001 6 1 0.8161 4.3170 0.0001 7 6 2.8024 4.0257 -0.0015 8 8 3.1004 5.2077 -0.0014 9 6 3.8421 2.9889 -0.0021 10 6 5.2738 3.3336 -0.0043 11 8 5.8262 3.6442 1.0341 12 7 5.9732 3.2996 -1.1558 13 6 7.2783 3.7089 -1.1756 14 1 7.7721 3.9836 -0.2552 15 6 7.9695 3.7712 -2.3811 16 7 7.3186 3.9904 -3.5006 17 14 9.8233 3.5434 -2.4077 18 1 10.1652 2.2032 -1.8672 19 1 10.3157 3.6547 -3.8043 20 1 10.4629 4.5918 -1.5728 21 6 5.3359 2.8244 -2.3864 22 6 4.6782 4.0024 -3.1078 23 6 3.4107 1.6620 -0.0065 24 6 4.3986 0.5240 -0.0130 25 6 4.6881 0.0915 1.4257 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 7.8006 4.0343 -4.3412 32 1 6.0879 2.3752 -3.0349 33 1 4.5782 2.0808 -2.1392 34 1 3.9261 4.4516 -2.4593 35 1 5.4359 4.7460 -3.3549 36 1 4.2037 3.6488 -4.0231 37 1 3.9812 -0.3162 -0.5680 38 1 5.3243 0.8491 -0.4879 39 1 5.1054 0.9316 1.9807 40 1 3.7624 -0.2337 1.9006 41 1 5.4022 -0.7319 1.4209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271037672.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:30 Heat of formation + Delta-G solvation = -33.091584 kcal Electronic energy + Delta-G solvation = -25138.213551 eV Core-core repulsion = 21632.770810 eV Total energy + Delta-G solvation = -3505.442741 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.95569 -40.45124 -39.25347 -37.21820 -36.99065 -34.72786 -33.75470 -32.13790 -31.36245 -30.78298 -27.87335 -26.58208 -25.64556 -24.26950 -23.43805 -22.67874 -21.56586 -19.74869 -19.01473 -18.78051 -18.01251 -17.38063 -17.07719 -16.63482 -16.06266 -15.65837 -15.56440 -15.38605 -14.93328 -14.72587 -14.62541 -14.47427 -13.97035 -13.80516 -13.71062 -13.17578 -13.11043 -12.91396 -12.73378 -12.61570 -12.40582 -12.23014 -12.19960 -12.14006 -12.04997 -11.80098 -11.68235 -11.12837 -10.94126 -10.88856 -10.45391 -9.86163 -9.52935 -8.40359 -5.88691 -0.69973 0.48696 1.19128 1.42722 1.43230 1.53041 1.90532 2.12890 2.28541 2.80843 2.92034 3.10178 3.34587 3.53501 3.73533 4.13439 4.25946 4.28533 4.36581 4.41512 4.53014 4.59352 4.66934 4.73303 4.78174 4.86992 4.97400 4.99761 5.07552 5.17627 5.27559 5.28854 5.33654 5.34947 5.38963 5.40558 5.65591 5.84721 5.96391 6.45793 6.46772 7.06623 7.08942 7.36091 7.93967 8.55617 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019968 B = 0.005689 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.873568 B = 4920.512652 C = 5296.048145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.059 4.059 3 C 0.084 3.916 4 N -0.215 5.215 5 N -0.434 5.434 6 H 0.450 0.550 7 C 0.487 3.513 8 O -0.570 6.570 9 C -0.194 4.194 10 C 0.488 3.512 11 O -0.636 6.636 12 N -0.425 5.425 13 C -0.361 4.361 14 H 0.073 0.927 15 C 0.014 3.986 16 N -0.857 5.857 17 Si 0.984 3.016 18 H -0.266 1.266 19 H -0.265 1.265 20 H -0.281 1.281 21 C 0.130 3.870 22 C -0.141 4.141 23 C 0.003 3.997 24 C -0.098 4.098 25 C -0.140 4.140 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.279 0.721 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.005 0.995 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.137 0.863 38 H 0.056 0.944 39 H 0.020 0.980 40 H 0.088 0.912 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.256 -15.014 0.052 20.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.097 4.097 3 C -0.088 4.088 4 N -0.039 5.039 5 N -0.181 5.181 6 H 0.298 0.702 7 C 0.282 3.718 8 O -0.450 6.450 9 C -0.210 4.210 10 C 0.277 3.723 11 O -0.525 6.525 12 N -0.141 5.141 13 C -0.488 4.488 14 H 0.091 0.909 15 C -0.191 4.191 16 N -0.494 5.494 17 Si 0.807 3.193 18 H -0.191 1.191 19 H -0.189 1.189 20 H -0.207 1.207 21 C 0.007 3.993 22 C -0.199 4.199 23 C -0.004 4.004 24 C -0.135 4.135 25 C -0.197 4.197 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.024 0.976 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.155 0.845 38 H 0.075 0.925 39 H 0.039 0.961 40 H 0.107 0.893 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.567 -14.005 0.266 19.501 hybrid contribution 1.615 1.506 0.062 2.209 sum -11.952 -12.500 0.328 17.297 Atomic orbital electron populations 1.21607 0.93274 1.02671 1.02272 1.20710 0.97890 0.85194 1.05925 1.22207 0.87422 0.97479 1.01694 1.70473 1.32687 0.89731 1.10967 1.44466 1.07419 1.05664 1.60558 0.70227 1.19239 0.84382 0.89207 0.78948 1.90938 1.81714 1.19313 1.53001 1.22443 0.94148 0.94169 1.10205 1.17384 0.85362 0.85143 0.84436 1.90566 1.71471 1.56781 1.33698 1.43845 1.10640 1.52656 1.06927 1.19547 0.86752 1.47415 0.95092 0.90909 1.25953 1.04584 0.94758 0.93808 1.70196 1.38179 1.41325 0.99658 0.85163 0.77178 0.79150 0.77794 1.19090 1.18901 1.20680 1.21479 0.96302 0.95870 0.85620 1.22085 0.99120 1.00388 0.98338 1.21829 0.96306 0.93259 0.88992 1.20928 0.96585 0.95541 1.00482 1.21696 1.03432 1.01010 0.93560 0.90099 0.92997 0.92861 0.86644 0.86938 0.91069 0.89428 0.92044 0.97606 0.90629 0.91584 0.84501 0.92517 0.96108 0.89342 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.12 71.98 0.66 -0.93 16 2 C -0.06 -0.73 5.15 29.85 0.15 -0.58 16 3 C 0.08 1.98 6.76 43.19 0.29 2.27 16 4 N -0.22 -5.45 9.94 -47.58 -0.47 -5.92 16 5 N -0.43 -13.32 6.16 -176.05 -1.09 -14.41 16 6 H 0.45 11.07 8.92 -220.13 -1.96 9.10 16 7 C 0.49 21.08 7.28 86.48 0.63 21.71 16 8 O -0.57 -30.16 17.55 -4.99 -0.09 -30.25 16 9 C -0.19 -8.54 4.40 -18.35 -0.08 -8.62 16 10 C 0.49 26.98 5.62 86.61 0.49 27.46 16 11 O -0.64 -40.91 16.69 -4.21 -0.07 -40.98 16 12 N -0.43 -23.21 2.40 -639.45 -1.54 -24.75 16 13 C -0.36 -21.21 9.43 84.13 0.79 -20.41 16 14 H 0.07 4.68 7.31 -2.91 -0.02 4.66 16 15 C 0.01 0.72 4.86 84.97 0.41 1.14 16 16 N -0.86 -43.57 8.31 21.69 0.18 -43.39 16 17 Si 0.98 41.63 29.64 68.60 2.03 43.67 16 18 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 19 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 21 C 0.13 5.97 4.67 86.38 0.40 6.37 16 22 C -0.14 -6.54 9.68 71.98 0.70 -5.84 16 23 C 0.00 0.08 4.25 -19.14 -0.08 0.00 16 24 C -0.10 -2.56 4.89 29.85 0.15 -2.41 16 25 C -0.14 -3.37 9.89 71.98 0.71 -2.65 16 26 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.05 0.68 8.05 -2.39 -0.02 0.66 16 28 H 0.05 0.69 8.05 -2.39 -0.02 0.67 16 29 H 0.12 0.95 7.54 -2.39 -0.02 0.93 16 30 H 0.11 0.98 7.17 -2.39 -0.02 0.96 16 31 H 0.28 13.06 8.31 -92.71 -0.77 12.29 16 32 H 0.09 4.12 6.11 -2.39 -0.01 4.11 16 33 H 0.06 2.41 5.28 -2.39 -0.01 2.39 16 34 H 0.00 0.24 7.19 -2.39 -0.02 0.22 16 35 H 0.08 3.99 5.90 -2.39 -0.01 3.97 16 36 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.14 2.13 6.86 -2.39 -0.02 2.11 16 38 H 0.06 1.94 6.14 -2.39 -0.01 1.92 16 39 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.09 1.51 7.17 -2.39 -0.02 1.49 16 41 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -82.28 330.62 3.29 -78.99 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -0.89 Total: 19.51 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: 5.22 Total: 17.52 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -2.92 Total: -88.46 kcal Atomic # 8 Polarization: -71.06 SS G_CDS: -0.16 Total: -71.22 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.67 kcal Total: -82.28 3.29 -78.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271037672.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.899 kcal (2) G-P(sol) polarization free energy of solvation -82.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds