Wall clock time and date at job start Tue Mar 31 2020 03:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47383 * 2 1 4 4 C 1.52996 * 109.47315 * 174.05166 * 3 2 1 5 5 H 1.08998 * 109.60954 * 41.77163 * 4 3 2 6 6 C 1.53360 * 109.61158 * 162.11653 * 4 3 2 7 7 N 1.46966 * 108.77920 * 169.25483 * 6 4 3 8 8 C 1.34777 * 120.59895 * 124.83566 * 7 6 4 9 9 O 1.21290 * 119.99389 * 0.02562 * 8 7 6 10 10 C 1.50692 * 120.00356 * 180.02562 * 8 7 6 11 11 C 1.47201 * 109.47223 * 180.02562 * 10 8 7 12 12 N 9.07933 * 150.13585 * 326.61055 * 2 1 3 13 13 C 1.46998 * 118.79012 * 305.07752 * 7 6 4 14 14 C 1.53371 * 108.77408 * 54.91677 * 13 7 6 15 15 N 1.46968 * 108.63592 * 310.67233 * 14 13 7 16 16 C 1.34769 * 120.59235 * 235.24564 * 15 14 13 17 17 O 1.21694 * 119.99954 * 185.34902 * 16 15 14 18 18 C 1.46373 * 120.00402 * 5.35304 * 16 15 14 19 19 H 1.08000 * 119.99567 * 351.86847 * 18 16 15 20 20 C 1.40047 * 120.00577 * 171.86861 * 18 16 15 21 21 N 1.30674 * 119.99660 * 5.93495 * 20 18 16 22 22 Si 1.86795 * 120.00573 * 185.93133 * 20 18 16 23 23 H 1.48495 * 109.47106 * 94.98400 * 22 20 18 24 24 H 1.48496 * 109.47551 * 214.98972 * 22 20 18 25 25 H 1.48500 * 109.46888 * 334.98658 * 22 20 18 26 26 H 1.09003 * 109.47372 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46933 * 299.99673 * 1 2 3 28 28 H 1.08998 * 109.47392 * 59.99413 * 1 2 3 29 29 H 1.08998 * 109.46728 * 239.99695 * 2 1 3 30 30 H 1.08996 * 109.46714 * 120.00298 * 2 1 3 31 31 H 1.08998 * 109.46953 * 54.04797 * 3 2 1 32 32 H 1.09004 * 109.46837 * 294.05557 * 3 2 1 33 33 H 1.09004 * 109.61421 * 289.08455 * 6 4 3 34 34 H 1.09008 * 109.61107 * 49.42258 * 6 4 3 35 35 H 1.09004 * 109.46922 * 299.99828 * 10 8 7 36 36 H 1.08995 * 109.46970 * 59.99775 * 10 8 7 37 37 H 1.09001 * 109.46574 * 295.17781 * 13 7 6 38 38 H 1.08997 * 109.62037 * 174.75356 * 13 7 6 39 39 H 1.08993 * 109.61256 * 190.92316 * 14 13 7 40 40 H 1.09000 * 109.74779 * 70.49465 * 14 13 7 41 41 H 0.97000 * 120.00173 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5627 1.4450 0.1495 5 1 3.9923 0.6567 -0.4686 6 6 4.1206 2.8046 -0.2890 7 7 5.5358 2.8828 0.0996 8 6 6.4852 3.1542 -0.8177 9 8 6.1746 3.3369 -1.9759 10 6 7.9324 3.2306 -0.4046 11 6 8.7628 3.5382 -1.5805 12 7 9.4037 3.7748 -2.4880 13 6 5.8975 2.6543 1.5060 14 6 5.3395 1.2947 1.9445 15 7 3.9239 1.2207 1.5563 16 6 2.9742 0.9523 2.4740 17 8 1.8184 0.7972 2.1261 18 6 3.3327 0.8476 3.8893 19 1 4.3714 0.8540 4.1851 20 6 2.3289 0.7391 4.8599 21 7 1.0798 0.6146 4.4968 22 14 2.7755 0.7723 6.6733 23 1 2.6354 2.1565 7.1924 24 1 1.8673 -0.1320 7.4235 25 1 4.1789 0.3186 6.8458 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 1.5923 1.9861 0.8319 32 1 1.7662 1.9246 -0.9385 33 1 4.0323 2.9047 -1.3708 34 1 3.5626 3.6037 0.1991 35 1 8.0560 4.0149 0.3422 36 1 8.2404 2.2744 0.0182 37 1 5.4679 3.4426 2.1242 38 1 6.9825 2.6551 1.6096 39 1 5.4279 1.1946 3.0263 40 1 5.8949 0.4938 1.4565 41 1 0.3845 0.5398 5.1690 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274260799.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:38 Heat of formation + Delta-G solvation = -31.038038 kcal Electronic energy + Delta-G solvation = -24432.655256 eV Core-core repulsion = 20927.301564 eV Total energy + Delta-G solvation = -3505.353693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.47137 -40.13749 -37.69742 -37.22590 -35.84612 -34.47875 -34.22886 -32.71450 -31.36170 -29.05460 -27.74923 -26.96548 -23.97716 -23.37536 -22.41605 -21.12447 -20.17185 -18.59520 -18.56471 -17.88342 -17.23435 -16.82336 -16.67389 -16.37055 -16.04016 -15.47836 -15.23553 -15.12920 -14.91045 -14.32532 -14.19167 -13.96598 -13.78879 -13.61624 -13.45371 -13.41865 -13.07112 -12.83595 -12.67893 -12.61239 -12.57026 -12.42634 -12.15570 -11.97344 -11.88948 -11.57163 -11.42930 -11.12166 -10.90384 -10.65332 -9.89711 -8.99368 -8.67121 -8.04428 -6.61219 1.45038 1.47978 1.50151 1.55180 1.62518 1.82595 2.17149 2.33817 2.64859 2.95324 2.98554 3.55104 3.78227 3.93186 4.06993 4.26962 4.32056 4.41938 4.45019 4.48222 4.51349 4.59874 4.67704 4.69085 4.87423 4.90235 4.93395 4.97945 5.13276 5.22596 5.35525 5.44911 5.53270 5.56295 5.73810 5.86041 5.97997 6.33951 6.36935 6.57938 6.62178 7.07788 7.08147 7.63938 8.67499 8.87966 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016648 B = 0.004927 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.500736 B = 5681.142490 C = 7145.090489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.091 4.091 3 C -0.097 4.097 4 C 0.149 3.851 5 H 0.048 0.952 6 C 0.113 3.887 7 N -0.598 5.598 8 C 0.518 3.482 9 O -0.592 6.592 10 C -0.035 4.035 11 C 0.244 3.756 12 N -0.487 5.487 13 C 0.091 3.909 14 C 0.095 3.905 15 N -0.640 5.640 16 C 0.535 3.465 17 O -0.576 6.576 18 C -0.564 4.564 19 H 0.094 0.906 20 C 0.038 3.962 21 N -0.818 5.818 22 Si 0.979 3.021 23 H -0.270 1.270 24 H -0.287 1.287 25 H -0.245 1.245 26 H 0.042 0.958 27 H 0.032 0.968 28 H 0.053 0.947 29 H 0.033 0.967 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.190 0.810 36 H 0.188 0.812 37 H 0.078 0.922 38 H 0.151 0.849 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.509 3.315 0.053 11.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.129 4.129 3 C -0.134 4.134 4 C 0.044 3.956 5 H 0.066 0.934 6 C -0.012 4.012 7 N -0.330 5.330 8 C 0.306 3.694 9 O -0.473 6.473 10 C -0.076 4.076 11 C -0.073 4.073 12 N -0.165 5.165 13 C -0.031 4.031 14 C -0.028 4.028 15 N -0.378 5.378 16 C 0.341 3.659 17 O -0.461 6.461 18 C -0.601 4.601 19 H 0.111 0.889 20 C -0.177 4.177 21 N -0.449 5.449 22 Si 0.801 3.199 23 H -0.195 1.195 24 H -0.213 1.213 25 H -0.168 1.168 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.207 0.793 36 H 0.205 0.795 37 H 0.096 0.904 38 H 0.169 0.831 39 H 0.122 0.878 40 H 0.083 0.917 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.511 3.657 -2.042 12.249 hybrid contribution -0.831 -0.249 0.967 1.300 sum 10.679 3.408 -1.075 11.262 Atomic orbital electron populations 1.21469 0.96556 1.00075 1.00147 1.21476 0.95797 0.96768 0.98812 1.21773 0.93623 0.98225 0.99809 1.21224 0.95465 0.94992 0.83966 0.93401 1.21871 0.81264 0.97108 1.00936 1.48073 1.06201 1.68705 1.10007 1.20750 0.88256 0.75803 0.84586 1.90767 1.83581 1.52283 1.20637 1.19600 0.85481 1.11227 0.91310 1.28868 0.92665 0.91836 0.93958 1.81209 1.12964 1.10906 1.11391 1.22598 1.03827 0.97517 0.79173 1.22127 0.81309 0.96751 1.02630 1.48022 1.07440 1.75986 1.06359 1.18451 0.84335 0.76888 0.86256 1.90630 1.21170 1.54103 1.80158 1.21492 0.94727 1.53610 0.90279 0.88859 1.26682 0.94218 0.91686 1.05109 1.70166 1.01697 1.36985 1.36013 0.85268 0.79569 0.78357 0.76747 1.19487 1.21305 1.16830 0.93901 0.94922 0.92766 0.94849 0.92660 0.91134 0.93655 0.89586 0.91778 0.79314 0.79533 0.90370 0.83116 0.87758 0.91687 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.91 9.78 71.98 0.70 -4.21 16 2 C -0.09 -3.74 4.83 30.59 0.15 -3.60 16 3 C -0.10 -3.76 4.22 30.59 0.13 -3.63 16 4 C 0.15 5.12 3.05 45.02 0.14 5.26 16 5 H 0.05 1.67 8.01 -2.39 -0.02 1.65 16 6 C 0.11 3.27 5.82 86.41 0.50 3.77 16 7 N -0.60 -12.84 2.96 -817.93 -2.42 -15.26 16 8 C 0.52 10.66 7.68 87.65 0.67 11.33 16 9 O -0.59 -18.79 15.43 -3.06 -0.05 -18.83 16 10 C -0.04 -0.30 4.53 28.04 0.13 -0.17 16 11 C 0.24 4.74 14.67 89.44 1.31 6.05 16 12 N -0.49 -13.41 18.54 20.01 0.37 -13.04 16 13 C 0.09 1.43 6.50 86.41 0.56 2.00 16 14 C 0.10 2.38 6.51 86.41 0.56 2.94 16 15 N -0.64 -23.58 2.95 -799.23 -2.36 -25.93 16 16 C 0.54 25.83 6.99 86.36 0.60 26.43 16 17 O -0.58 -31.27 7.54 -4.33 -0.03 -31.30 16 18 C -0.56 -27.03 8.86 24.83 0.22 -26.81 16 19 H 0.09 3.86 5.66 -2.91 -0.02 3.84 16 20 C 0.04 1.89 5.49 85.30 0.47 2.36 16 21 N -0.82 -45.37 11.86 21.84 0.26 -45.11 16 22 Si 0.98 36.87 29.56 68.60 2.03 38.89 16 23 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 24 H -0.29 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.25 -8.34 7.11 99.48 0.71 -7.63 16 26 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.03 1.48 7.65 -2.38 -0.02 1.46 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 2.73 5.61 -2.76 -0.02 2.72 16 31 H 0.07 3.34 5.78 -7.61 -0.04 3.29 16 32 H 0.05 1.57 8.02 -2.39 -0.02 1.55 16 33 H 0.09 2.62 6.99 -2.38 -0.02 2.61 16 34 H 0.06 1.96 8.12 -2.38 -0.02 1.94 16 35 H 0.19 -0.14 7.92 -2.39 -0.02 -0.16 16 36 H 0.19 -0.02 7.71 -2.39 -0.02 -0.04 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.15 0.48 5.92 -2.39 -0.01 0.47 16 39 H 0.10 2.70 5.29 -2.39 -0.01 2.69 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 41 H 0.27 13.80 8.29 -92.71 -0.77 13.03 16 Total: -1.00 -78.63 330.78 4.97 -73.65 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 1.02 Total: 15.21 kcal Atomic # 6 Polarization: 15.57 SS G_CDS: 6.15 Total: 21.72 kcal Atomic # 7 Polarization: -95.19 SS G_CDS: -4.14 Total: -99.34 kcal Atomic # 8 Polarization: -50.06 SS G_CDS: -0.08 Total: -50.14 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.89 kcal Total: -78.63 4.97 -73.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274260799.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.615 kcal (2) G-P(sol) polarization free energy of solvation -78.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds