Wall clock time and date at job start Tue Mar 31 2020 03:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47278 * 2 1 4 4 C 1.50711 * 109.47138 * 179.97438 * 3 2 1 5 5 C 1.35312 * 126.66676 * 89.70468 * 4 3 2 6 6 C 1.42271 * 103.92054 * 179.91203 * 5 4 3 7 7 C 1.48333 * 126.93757 * 180.13057 * 6 5 4 8 8 O 1.21501 * 119.99889 * 7.77279 * 7 6 5 9 9 N 1.34773 * 120.00190 * 187.77267 * 7 6 5 10 10 C 1.46969 * 120.58963 * 5.76490 * 9 7 6 11 11 C 1.53810 * 108.39778 * 124.76257 * 10 9 7 12 12 N 1.46971 * 108.57874 * 49.63014 * 11 10 9 13 13 C 1.36936 * 120.58648 * 124.67040 * 12 11 10 14 14 H 1.08007 * 119.99919 * 212.13807 * 13 12 11 15 15 C 1.38809 * 120.00440 * 32.14074 * 13 12 11 16 16 N 1.31622 * 120.00167 * 17.09103 * 15 13 12 17 17 Si 1.86805 * 120.00254 * 197.09270 * 15 13 12 18 18 H 1.48504 * 109.47102 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47245 * 119.99827 * 17 15 13 20 20 H 1.48499 * 109.47043 * 240.00016 * 17 15 13 21 21 C 1.46957 * 118.81532 * 304.64917 * 12 11 10 22 22 C 1.46961 * 120.59556 * 186.04594 * 9 7 6 23 23 N 1.30985 * 106.12167 * 0.36090 * 6 5 4 24 24 O 1.20898 * 111.44055 * 359.76766 * 23 6 5 25 25 H 1.08996 * 109.47738 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46784 * 300.00627 * 1 2 3 27 27 H 1.08999 * 109.46846 * 60.00094 * 1 2 3 28 28 H 1.08999 * 109.46846 * 119.99906 * 2 1 3 29 29 H 1.09001 * 109.47213 * 239.99630 * 2 1 3 30 30 H 1.08999 * 109.47105 * 299.99748 * 3 2 1 31 31 H 1.08996 * 109.47791 * 60.00192 * 3 2 1 32 32 H 1.08003 * 128.03623 * 0.02562 * 5 4 3 33 33 H 1.09000 * 109.60648 * 244.54127 * 10 9 7 34 34 H 1.09000 * 109.60895 * 5.05283 * 10 9 7 35 35 H 1.09004 * 109.73698 * 289.84910 * 11 10 9 36 36 H 1.08992 * 109.53369 * 169.30033 * 11 10 9 37 37 H 0.96993 * 120.00382 * 180.02562 * 16 15 13 38 38 H 1.08995 * 109.61545 * 295.48302 * 21 12 11 39 39 H 1.09001 * 109.75020 * 175.05248 * 21 12 11 40 40 H 1.09001 * 109.60940 * 354.94810 * 22 9 7 41 41 H 1.09005 * 109.60914 * 115.45602 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.3556 1.4366 -1.0844 6 6 5.6674 1.4416 -0.5338 7 6 6.9482 1.4412 -1.2820 8 8 6.9466 1.5786 -2.4892 9 7 8.1138 1.2885 -0.6227 10 6 8.1257 0.9958 0.8175 11 6 8.9426 -0.2873 1.0454 12 7 10.2245 -0.1580 0.3381 13 6 11.4087 -0.3131 1.0081 14 1 12.2799 0.2468 0.7015 15 6 11.4894 -1.1900 2.0811 16 7 10.5621 -2.1082 2.2519 17 14 12.9143 -1.0668 3.2828 18 1 13.8148 0.0400 2.8712 19 1 12.3903 -0.7983 4.6461 20 1 13.6709 -2.3446 3.2861 21 6 10.2126 0.1402 -1.1008 22 6 9.3956 1.4178 -1.3298 23 7 5.5158 1.4416 0.7673 24 8 4.3469 1.4420 1.0760 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9564 0.8899 32 1 4.0711 1.4315 -2.1263 33 1 8.5846 1.8253 1.3555 34 1 7.1045 0.8486 1.1693 35 1 8.3954 -1.1461 0.6566 36 1 9.1249 -0.4187 2.1119 37 1 10.6183 -2.7207 3.0019 38 1 9.7558 -0.6881 -1.6424 39 1 11.2328 0.2900 -1.4544 40 1 9.2133 1.5492 -2.3964 41 1 9.9428 2.2766 -0.9411 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294961589.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:22 Heat of formation + Delta-G solvation = 57.173992 kcal Electronic energy + Delta-G solvation = -23706.209768 eV Core-core repulsion = 20204.681236 eV Total energy + Delta-G solvation = -3501.528532 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.06654 -39.55841 -36.83441 -35.97146 -34.17934 -33.67746 -31.94644 -31.15516 -30.15090 -27.31007 -27.18056 -24.84427 -23.47277 -22.68188 -22.66169 -21.86064 -20.29835 -18.80421 -17.74977 -17.34210 -17.06000 -16.04353 -15.65549 -15.44726 -14.81970 -14.71011 -14.44788 -13.84350 -13.68738 -13.55592 -13.46810 -13.39566 -13.23386 -12.72736 -12.47015 -11.98772 -11.89746 -11.69254 -11.48976 -11.11985 -10.99912 -10.80094 -10.71559 -10.47864 -10.39340 -10.26832 -10.05561 -9.90142 -9.65968 -9.40668 -8.60112 -8.31561 -6.67683 -5.86141 -3.34024 1.17941 1.67827 2.85376 3.18985 3.33186 3.38772 3.41760 3.44075 4.04947 4.31961 4.45087 4.62379 4.63081 4.85848 4.95227 5.06760 5.22810 5.28644 5.31944 5.40244 5.41881 5.44714 5.69227 5.80105 5.82655 5.84783 5.89469 5.92750 5.96536 6.12816 6.26125 6.41354 6.47558 6.77265 6.90601 7.18246 7.40479 7.71491 7.77202 8.06335 8.37117 8.38198 9.11456 9.73395 10.33199 11.21641 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021955 B = 0.003689 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.044547 B = 7589.003642 C = 8433.590540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.037 4.037 4 C -0.035 4.035 5 C -0.182 4.182 6 C -0.013 4.013 7 C 0.587 3.413 8 O -0.544 6.544 9 N -0.577 5.577 10 C 0.059 3.941 11 C 0.164 3.836 12 N -0.591 5.591 13 C -0.260 4.260 14 H 0.066 0.934 15 C 0.007 3.993 16 N -0.898 5.898 17 Si 0.903 3.097 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.289 1.289 21 C 0.132 3.868 22 C 0.095 3.905 23 N -0.321 5.321 24 O 0.113 5.887 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.178 0.822 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.023 0.977 36 H 0.093 0.907 37 H 0.255 0.745 38 H 0.024 0.976 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.384 6.909 -3.643 19.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.075 4.075 4 C -0.099 4.099 5 C -0.204 4.204 6 C -0.172 4.172 7 C 0.372 3.628 8 O -0.422 6.422 9 N -0.308 5.308 10 C -0.065 4.065 11 C 0.037 3.963 12 N -0.314 5.314 13 C -0.390 4.390 14 H 0.084 0.916 15 C -0.192 4.192 16 N -0.542 5.542 17 Si 0.733 3.267 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.216 1.216 21 C 0.005 3.995 22 C -0.029 4.029 23 N -0.025 5.025 24 O 0.041 5.959 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.195 0.805 33 H 0.083 0.917 34 H 0.123 0.877 35 H 0.041 0.959 36 H 0.111 0.889 37 H 0.065 0.935 38 H 0.042 0.958 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.437 6.841 -3.144 18.993 hybrid contribution 0.484 -0.096 0.024 0.494 sum -16.953 6.745 -3.119 18.510 Atomic orbital electron populations 1.21763 0.94908 1.02204 1.02042 1.21581 0.96276 0.95048 1.03401 1.20237 0.83423 0.99012 1.04856 1.24447 0.96081 1.03640 0.85696 1.22379 0.89758 1.06950 1.01332 1.23582 0.96833 1.06817 0.89973 1.17032 0.81678 0.77974 0.86079 1.90729 1.86386 1.52178 1.12865 1.47971 1.05127 1.66579 1.11163 1.23423 1.03479 1.01157 0.78397 1.21164 0.85040 0.90607 0.99445 1.43986 1.02471 1.82788 1.02106 1.19193 0.89467 1.18549 1.11742 0.91583 1.25179 0.97923 0.94947 1.01173 1.70043 1.35732 1.17903 1.30487 0.86219 0.81880 0.77504 0.81119 1.20122 1.21409 1.21615 1.21298 0.97790 0.93040 0.87391 1.22344 0.82985 1.00539 0.97001 1.74189 0.96263 1.16473 1.15550 1.84820 1.11502 1.65854 1.33681 0.92268 0.92406 0.92479 0.91101 0.91200 0.88411 0.89165 0.80479 0.91721 0.87681 0.95886 0.88881 0.93510 0.95783 0.91244 0.89740 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.13 -0.81 5.92 -26.73 -0.16 -0.97 16 3 C -0.04 -0.24 5.78 -27.88 -0.16 -0.40 16 4 C -0.04 -0.38 6.73 -35.35 -0.24 -0.62 16 5 C -0.18 -2.35 10.93 -39.08 -0.43 -2.78 16 6 C -0.01 -0.22 6.88 -82.53 -0.57 -0.79 16 7 C 0.59 11.39 7.71 -12.11 -0.09 11.30 16 8 O -0.54 -11.35 16.38 5.37 0.09 -11.27 16 9 N -0.58 -11.53 2.94 -173.14 -0.51 -12.04 16 10 C 0.06 1.21 6.37 -3.36 -0.02 1.19 16 11 C 0.16 3.98 5.50 -3.36 -0.02 3.96 16 12 N -0.59 -14.97 2.94 -171.77 -0.51 -15.48 16 13 C -0.26 -7.09 9.53 -15.06 -0.14 -7.23 16 14 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 15 C 0.01 0.20 4.88 -17.43 -0.09 0.12 16 16 N -0.90 -25.96 11.48 55.49 0.64 -25.33 16 17 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 C 0.13 2.87 6.67 -3.60 -0.02 2.84 16 22 C 0.09 1.83 6.60 -3.60 -0.02 1.80 16 23 N -0.32 -5.20 8.63 33.29 0.29 -4.91 16 24 O 0.11 1.52 11.18 17.25 0.19 1.71 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.18 1.95 8.06 -52.48 -0.42 1.53 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.11 2.03 4.09 -60.27 -0.25 1.79 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 2.46 6.30 -51.93 -0.33 2.13 16 37 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 1.42 7.94 -51.93 -0.41 1.00 16 40 H 0.08 1.55 6.99 -51.93 -0.36 1.18 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 336.99 15.07 5.08 5.08 Total: -1.00 -31.90 336.99 -7.32 -39.22 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -5.97 Total: -1.43 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -1.59 Total: 8.02 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: -0.09 Total: -57.75 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.28 Total: -9.56 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.90 -7.32 -39.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294961589.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.396 kcal (2) G-P(sol) polarization free energy of solvation -31.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds