Wall clock time and date at job start Tue Mar 31 2020 03:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35120 * 125.54782 * 2 1 4 4 C 1.40986 * 108.23924 * 179.97438 * 3 2 1 5 5 N 1.33307 * 126.35778 * 179.97438 * 4 3 2 6 6 C 1.32911 * 120.00133 * 0.02562 * 5 4 3 7 7 O 1.21591 * 119.99731 * 0.02562 * 6 5 4 8 8 C 1.50693 * 120.00201 * 180.02562 * 6 5 4 9 9 H 1.09000 * 110.98819 * 62.74329 * 8 6 5 10 10 C 1.54951 * 111.12541 * 298.54525 * 8 6 5 11 11 O 1.43641 * 105.13632 * 205.59596 * 10 8 6 12 12 C 1.43245 * 109.97171 * 24.42677 * 11 10 8 13 13 H 1.09002 * 109.82692 * 238.77298 * 12 11 10 14 14 C 1.53005 * 109.82647 * 117.80440 * 12 11 10 15 15 C 1.54380 * 107.59000 * 358.29008 * 12 11 10 16 16 N 1.37277 * 107.28734 * 0.25895 * 4 3 2 17 17 H 0.96998 * 126.35242 * 179.69512 * 16 4 3 18 18 N 1.36340 * 125.55397 * 179.97438 * 2 1 3 19 19 C 1.46497 * 125.86272 * 0.02562 * 18 2 1 20 20 C 1.50701 * 109.47076 * 84.99548 * 19 18 2 21 21 H 1.08002 * 120.00149 * 0.02562 * 20 19 18 22 22 C 1.37879 * 120.00105 * 179.97438 * 20 19 18 23 23 N 1.31520 * 119.99606 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00182 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47096 * 89.99945 * 24 22 20 26 26 H 1.48500 * 109.47236 * 209.99997 * 24 22 20 27 27 H 1.48504 * 109.47158 * 330.00196 * 24 22 20 28 28 H 1.08999 * 109.47063 * 90.03731 * 1 2 3 29 29 H 1.09003 * 109.46888 * 210.02647 * 1 2 3 30 30 H 1.08994 * 109.47516 * 330.02583 * 1 2 3 31 31 H 1.07999 * 125.88656 * 359.97041 * 3 2 1 32 32 H 1.08996 * 110.30651 * 86.67969 * 10 8 6 33 33 H 1.08995 * 110.30511 * 324.50860 * 10 8 6 34 34 H 1.09003 * 109.47160 * 61.45444 * 14 12 11 35 35 H 1.09006 * 109.46508 * 181.45414 * 14 12 11 36 36 H 1.08999 * 109.46794 * 301.44913 * 14 12 11 37 37 H 1.08999 * 110.84912 * 96.83234 * 15 12 11 38 38 H 1.08999 * 110.84558 * 220.45197 * 15 12 11 39 39 H 1.08998 * 109.47363 * 205.00200 * 19 18 2 40 40 H 1.09005 * 109.46902 * 325.00038 * 19 18 2 41 41 H 0.97004 * 119.99062 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2925 1.0994 0.0000 4 6 3.6386 0.6799 0.0006 5 7 4.7125 1.4697 0.0003 6 6 4.5659 2.7907 -0.0001 7 8 3.4522 3.2788 0.0002 8 6 5.7798 3.6836 -0.0010 9 1 6.3700 3.5391 -0.9060 10 6 6.6395 3.4586 1.2683 11 8 7.3479 4.6926 1.4652 12 6 6.6307 5.7713 0.8536 13 1 7.2597 6.2578 0.1081 14 6 6.2087 6.7843 1.9198 15 6 5.3797 5.1740 0.1743 16 7 3.6381 -0.6928 -0.0050 17 1 4.4190 -1.2681 -0.0101 18 7 2.2997 -1.1092 0.0005 19 6 1.8329 -2.4978 0.0006 20 6 1.5558 -2.9347 -1.4148 21 1 1.7123 -2.2470 -2.2327 22 6 1.1036 -4.2128 -1.6658 23 7 0.9135 -5.0505 -0.6699 24 14 0.7609 -4.7546 -3.4203 25 1 1.9924 -5.3422 -4.0064 26 1 -0.3218 -5.7709 -3.4220 27 1 0.3397 -3.5813 -4.2274 28 1 -0.3633 -0.0007 -1.0277 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3634 0.8901 0.5134 31 1 1.9487 2.1232 -0.0005 32 1 7.3419 2.6404 1.1093 33 1 6.0003 3.2484 2.1257 34 1 7.0958 7.1967 2.4005 35 1 5.6415 7.5891 1.4520 36 1 5.5880 6.2887 2.6663 37 1 4.5060 5.2678 0.8192 38 1 5.2017 5.6443 -0.7928 39 1 2.5997 -3.1390 0.4353 40 1 0.9189 -2.5738 0.5897 41 1 0.5950 -5.9495 -0.8465 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353477792.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:36 Heat of formation + Delta-G solvation = 5.798017 kcal Electronic energy + Delta-G solvation = -23146.522751 eV Core-core repulsion = 19642.766390 eV Total energy + Delta-G solvation = -3503.756362 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.03689 -39.78002 -37.99923 -34.43295 -33.21091 -32.38697 -32.12745 -31.68619 -30.57664 -27.61798 -26.94780 -25.97672 -23.93077 -22.79477 -21.26374 -20.86903 -19.74748 -18.81763 -17.23358 -16.98389 -16.74896 -15.93463 -15.56808 -15.10397 -15.00955 -14.52324 -14.29024 -14.01245 -13.65043 -13.34233 -12.97627 -12.90702 -12.74695 -12.58605 -12.55748 -12.35137 -12.04918 -11.87002 -11.72375 -11.38272 -11.10607 -11.07414 -10.83517 -10.70493 -10.56880 -10.40538 -9.52383 -9.46823 -9.32621 -8.97212 -8.93846 -8.41407 -7.05395 -6.55752 -4.71166 1.55378 1.96517 2.87069 3.01807 3.10225 3.13768 3.83044 4.00789 4.17115 4.22408 4.62648 4.69076 4.76407 4.94497 5.05178 5.08168 5.30331 5.34983 5.38377 5.47107 5.62117 5.73598 5.77015 5.79360 5.89568 5.96956 6.04988 6.10085 6.10999 6.14634 6.32324 6.42242 6.47503 6.54736 6.69393 7.08567 7.32007 7.41136 7.45781 7.57246 7.89719 8.25048 8.37809 8.99621 9.29641 10.47381 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.034276 B = 0.002927 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.693630 B = 9562.885184 C = 9768.798718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.191 3.809 3 C -0.333 4.333 4 C 0.470 3.530 5 N -0.701 5.701 6 C 0.504 3.496 7 O -0.585 6.585 8 C -0.116 4.116 9 H 0.102 0.898 10 C 0.075 3.925 11 O -0.384 6.384 12 C 0.074 3.926 13 H 0.077 0.923 14 C -0.161 4.161 15 C -0.134 4.134 16 N -0.465 5.465 17 H 0.446 0.554 18 N -0.337 5.337 19 C 0.253 3.747 20 C -0.557 4.557 21 H 0.069 0.931 22 C 0.071 3.929 23 N -0.886 5.886 24 Si 0.909 3.091 25 H -0.276 1.276 26 H -0.281 1.281 27 H -0.270 1.270 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.183 0.817 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.797 11.971 2.825 12.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 C -0.365 4.365 4 C 0.222 3.778 5 N -0.466 5.466 6 C 0.289 3.711 7 O -0.467 6.467 8 C -0.138 4.138 9 H 0.120 0.880 10 C -0.001 4.001 11 O -0.304 6.304 12 C 0.016 3.984 13 H 0.095 0.905 14 C -0.218 4.218 15 C -0.172 4.172 16 N -0.186 5.186 17 H 0.293 0.707 18 N -0.122 5.122 19 C 0.137 3.863 20 C -0.595 4.595 21 H 0.087 0.913 22 C -0.134 4.134 23 N -0.522 5.522 24 Si 0.736 3.264 25 H -0.202 1.202 26 H -0.206 1.206 27 H -0.194 1.194 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.200 0.800 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.160 11.381 3.002 12.484 hybrid contribution -0.456 -0.665 -1.134 1.392 sum 3.704 10.716 1.867 11.491 Atomic orbital electron populations 1.20608 0.86234 1.03956 1.04376 1.21393 0.94580 0.85594 0.92127 1.22260 0.91176 1.00298 1.22772 1.19201 0.91737 0.82099 0.84757 1.68721 1.28065 1.05322 1.44474 1.20245 0.88395 0.86359 0.76120 1.90530 1.27044 1.79242 1.49880 1.22520 0.96561 0.94167 1.00502 0.87983 1.23143 0.94756 0.86750 0.95478 1.88396 1.47799 1.16184 1.78009 1.22743 0.92647 0.88678 0.94298 0.90487 1.22130 1.01571 0.98786 0.99330 1.23075 0.98234 0.93811 1.02069 1.44544 0.98935 1.05289 1.69815 0.70679 1.47979 0.92777 1.08325 1.63153 1.20077 0.96562 0.70049 0.99655 1.21357 1.47855 0.98763 0.91532 0.91276 1.24947 0.94197 0.95772 0.98508 1.69899 1.43930 1.06940 1.31461 0.86294 0.78394 0.78747 0.83002 1.20171 1.20621 1.19413 0.89050 0.90023 0.89482 0.79962 0.88885 0.92362 0.92206 0.91621 0.92178 0.89344 0.90144 0.93018 0.91347 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.27 10.09 36.00 0.36 -0.91 16 2 C 0.19 3.31 6.93 -81.70 -0.57 2.74 16 3 C -0.33 -6.26 9.41 -39.65 -0.37 -6.64 16 4 C 0.47 9.09 8.07 -155.19 -1.25 7.84 16 5 N -0.70 -13.56 10.46 -11.59 -0.12 -13.68 16 6 C 0.50 9.51 7.04 -11.81 -0.08 9.42 16 7 O -0.58 -12.12 12.70 5.29 0.07 -12.05 16 8 C -0.12 -1.76 3.56 -89.52 -0.32 -2.07 16 9 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 10 C 0.08 1.08 7.21 38.19 0.28 1.36 16 11 O -0.38 -5.48 11.02 -35.23 -0.39 -5.87 16 12 C 0.07 0.89 4.16 -26.01 -0.11 0.78 16 13 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 14 C -0.16 -1.65 9.44 37.16 0.35 -1.30 16 15 C -0.13 -1.78 5.65 -24.78 -0.14 -1.92 16 16 N -0.46 -8.29 7.37 31.32 0.23 -8.06 16 17 H 0.45 6.96 8.96 -182.55 -1.64 5.32 16 18 N -0.34 -6.27 3.63 -58.03 -0.21 -6.48 16 19 C 0.25 5.20 5.93 -5.19 -0.03 5.17 16 20 C -0.56 -12.97 9.39 -34.44 -0.32 -13.30 16 21 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 22 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.89 -22.07 13.29 55.43 0.74 -21.33 16 24 Si 0.91 18.93 29.54 -169.99 -5.02 13.90 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 27 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 28 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.08 1.09 7.14 -51.93 -0.37 0.72 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.18 3.56 5.77 -52.49 -0.30 3.25 16 32 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 0.88 8.02 -51.93 -0.42 0.46 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.29 7.19 -51.93 -0.37 0.92 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 1.41 7.18 -51.93 -0.37 1.04 16 41 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 LS Contribution 343.45 15.07 5.18 5.18 Total: -1.00 -28.09 343.45 -9.08 -37.17 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -7.25 Total: 8.45 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -2.30 Total: 2.77 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.64 Total: -49.56 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.32 Total: -17.92 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.90 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.09 -9.08 -37.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353477792.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.971 kcal (2) G-P(sol) polarization free energy of solvation -28.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds