Wall clock time and date at job start Tue Mar 31 2020 03:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35120 * 125.54782 * 2 1 4 4 C 1.40986 * 108.23924 * 179.97438 * 3 2 1 5 5 N 1.33307 * 126.35778 * 179.97438 * 4 3 2 6 6 C 1.32911 * 120.00133 * 0.02562 * 5 4 3 7 7 O 1.21591 * 119.99731 * 0.02562 * 6 5 4 8 8 C 1.50693 * 120.00201 * 180.02562 * 6 5 4 9 9 H 1.09000 * 110.98819 * 62.74329 * 8 6 5 10 10 C 1.54951 * 111.12541 * 298.54525 * 8 6 5 11 11 O 1.43641 * 105.13632 * 205.59596 * 10 8 6 12 12 C 1.43245 * 109.97171 * 24.42677 * 11 10 8 13 13 H 1.09002 * 109.82692 * 238.77298 * 12 11 10 14 14 C 1.53005 * 109.82647 * 117.80440 * 12 11 10 15 15 C 1.54380 * 107.59000 * 358.29008 * 12 11 10 16 16 N 1.37277 * 107.28734 * 0.25895 * 4 3 2 17 17 H 0.96998 * 126.35242 * 179.69512 * 16 4 3 18 18 N 1.36340 * 125.55397 * 179.97438 * 2 1 3 19 19 C 1.46497 * 125.86272 * 0.02562 * 18 2 1 20 20 C 1.50701 * 109.47076 * 84.99548 * 19 18 2 21 21 H 1.08002 * 120.00149 * 0.02562 * 20 19 18 22 22 C 1.37879 * 120.00105 * 179.97438 * 20 19 18 23 23 N 1.31520 * 119.99606 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00182 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47096 * 89.99945 * 24 22 20 26 26 H 1.48500 * 109.47236 * 209.99997 * 24 22 20 27 27 H 1.48504 * 109.47158 * 330.00196 * 24 22 20 28 28 H 1.08999 * 109.47063 * 90.03731 * 1 2 3 29 29 H 1.09003 * 109.46888 * 210.02647 * 1 2 3 30 30 H 1.08994 * 109.47516 * 330.02583 * 1 2 3 31 31 H 1.07999 * 125.88656 * 359.97041 * 3 2 1 32 32 H 1.08996 * 110.30651 * 86.67969 * 10 8 6 33 33 H 1.08995 * 110.30511 * 324.50860 * 10 8 6 34 34 H 1.09003 * 109.47160 * 61.45444 * 14 12 11 35 35 H 1.09006 * 109.46508 * 181.45414 * 14 12 11 36 36 H 1.08999 * 109.46794 * 301.44913 * 14 12 11 37 37 H 1.08999 * 110.84912 * 96.83234 * 15 12 11 38 38 H 1.08999 * 110.84558 * 220.45197 * 15 12 11 39 39 H 1.08998 * 109.47363 * 205.00200 * 19 18 2 40 40 H 1.09005 * 109.46902 * 325.00038 * 19 18 2 41 41 H 0.97004 * 119.99062 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2925 1.0994 0.0000 4 6 3.6386 0.6799 0.0006 5 7 4.7125 1.4697 0.0003 6 6 4.5659 2.7907 -0.0001 7 8 3.4522 3.2788 0.0002 8 6 5.7798 3.6836 -0.0010 9 1 6.3700 3.5391 -0.9060 10 6 6.6395 3.4586 1.2683 11 8 7.3479 4.6926 1.4652 12 6 6.6307 5.7713 0.8536 13 1 7.2597 6.2578 0.1081 14 6 6.2087 6.7843 1.9198 15 6 5.3797 5.1740 0.1743 16 7 3.6381 -0.6928 -0.0050 17 1 4.4190 -1.2681 -0.0101 18 7 2.2997 -1.1092 0.0005 19 6 1.8329 -2.4978 0.0006 20 6 1.5558 -2.9347 -1.4148 21 1 1.7123 -2.2470 -2.2327 22 6 1.1036 -4.2128 -1.6658 23 7 0.9135 -5.0505 -0.6699 24 14 0.7609 -4.7546 -3.4203 25 1 1.9924 -5.3422 -4.0064 26 1 -0.3218 -5.7709 -3.4220 27 1 0.3397 -3.5813 -4.2274 28 1 -0.3633 -0.0007 -1.0277 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3634 0.8901 0.5134 31 1 1.9487 2.1232 -0.0005 32 1 7.3419 2.6404 1.1093 33 1 6.0003 3.2484 2.1257 34 1 7.0958 7.1967 2.4005 35 1 5.6415 7.5891 1.4520 36 1 5.5880 6.2887 2.6663 37 1 4.5060 5.2678 0.8192 38 1 5.2017 5.6443 -0.7928 39 1 2.5997 -3.1390 0.4353 40 1 0.9189 -2.5738 0.5897 41 1 0.5950 -5.9495 -0.8465 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353477792.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:35 Heat of formation + Delta-G solvation = -11.477402 kcal Electronic energy + Delta-G solvation = -23147.271870 eV Core-core repulsion = 19642.766390 eV Total energy + Delta-G solvation = -3504.505480 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.49873 -40.98044 -39.34935 -36.05482 -34.82785 -33.75738 -33.29335 -32.84538 -32.05487 -28.87770 -28.57510 -27.01529 -25.44121 -24.30445 -22.59248 -21.91652 -21.13848 -20.20978 -18.93314 -18.43879 -17.99410 -17.21302 -17.00497 -16.64260 -16.51403 -15.82638 -15.64096 -15.33264 -14.73724 -14.62397 -14.43325 -14.32784 -14.16417 -13.79017 -13.72072 -13.45987 -13.43818 -13.19043 -12.95823 -12.75499 -12.74959 -12.31668 -12.15611 -12.04549 -11.91803 -11.70610 -11.12755 -10.81459 -10.76504 -10.51142 -10.36270 -9.92668 -8.64699 -8.31177 -6.57906 0.09357 0.50390 1.37052 1.40414 1.43302 1.50339 2.29030 2.61674 2.77192 2.87313 2.93929 3.47868 3.52042 3.64496 3.96648 4.06916 4.16762 4.20762 4.23779 4.30340 4.45079 4.65047 4.73466 4.75519 4.79464 4.82665 4.83645 4.89985 4.96193 4.97023 5.06355 5.12428 5.23211 5.28396 5.35469 5.49143 5.67530 5.93717 6.04242 6.08793 6.38968 6.58820 6.80221 7.15812 7.81275 8.64829 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.034276 B = 0.002927 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.693630 B = 9562.885184 C = 9768.798718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.198 3.802 3 C -0.346 4.346 4 C 0.455 3.545 5 N -0.709 5.709 6 C 0.493 3.507 7 O -0.608 6.608 8 C -0.116 4.116 9 H 0.113 0.887 10 C 0.082 3.918 11 O -0.395 6.395 12 C 0.071 3.929 13 H 0.099 0.901 14 C -0.158 4.158 15 C -0.129 4.129 16 N -0.461 5.461 17 H 0.453 0.547 18 N -0.343 5.343 19 C 0.266 3.734 20 C -0.562 4.562 21 H 0.058 0.942 22 C 0.033 3.967 23 N -0.912 5.912 24 Si 0.962 3.038 25 H -0.278 1.278 26 H -0.277 1.277 27 H -0.269 1.269 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.177 0.823 32 H 0.100 0.900 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.799 12.783 2.272 13.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.071 3.929 3 C -0.377 4.377 4 C 0.207 3.793 5 N -0.473 5.473 6 C 0.279 3.721 7 O -0.492 6.492 8 C -0.137 4.137 9 H 0.131 0.869 10 C 0.006 3.994 11 O -0.315 6.315 12 C 0.014 3.986 13 H 0.116 0.884 14 C -0.216 4.216 15 C -0.167 4.167 16 N -0.183 5.183 17 H 0.302 0.698 18 N -0.129 5.129 19 C 0.149 3.851 20 C -0.600 4.600 21 H 0.076 0.924 22 C -0.170 4.170 23 N -0.549 5.549 24 Si 0.787 3.213 25 H -0.203 1.203 26 H -0.202 1.202 27 H -0.194 1.194 28 H 0.117 0.883 29 H 0.103 0.897 30 H 0.133 0.867 31 H 0.194 0.806 32 H 0.118 0.882 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.176 12.201 2.453 13.127 hybrid contribution -0.454 -0.882 -0.949 1.373 sum 3.722 11.319 1.504 12.010 Atomic orbital electron populations 1.20798 0.83506 1.05521 1.05260 1.21945 0.96117 0.84553 0.90282 1.22210 0.91322 1.00375 1.23838 1.19443 0.92251 0.82564 0.85050 1.68811 1.28176 1.05700 1.44661 1.20892 0.89297 0.86526 0.75377 1.90509 1.28243 1.79532 1.50965 1.22546 0.95266 0.94570 1.01320 0.86857 1.23028 0.94569 0.87298 0.94549 1.88386 1.48169 1.16491 1.78423 1.22948 0.92164 0.88323 0.95137 0.88357 1.22127 1.01979 0.98736 0.98732 1.23056 0.98258 0.92729 1.02626 1.44534 0.99025 1.05045 1.69712 0.69776 1.47881 0.93280 1.08134 1.63593 1.19770 0.96347 0.70721 0.98291 1.21504 1.47472 0.98653 0.92408 0.92400 1.25568 0.94146 0.95915 1.01353 1.69962 1.44826 1.07268 1.32874 0.85473 0.78096 0.78277 0.79425 1.20344 1.20165 1.19362 0.88280 0.89663 0.86706 0.80637 0.88219 0.93690 0.91336 0.89744 0.93410 0.91000 0.88758 0.93877 0.91072 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.37 10.09 71.23 0.72 -1.65 16 2 C 0.20 6.72 6.93 41.14 0.28 7.01 16 3 C -0.35 -12.94 9.41 22.23 0.21 -12.73 16 4 C 0.46 17.61 8.07 133.83 1.08 18.69 16 5 N -0.71 -27.48 10.46 -309.88 -3.24 -30.72 16 6 C 0.49 18.61 7.04 87.94 0.62 19.23 16 7 O -0.61 -25.40 12.70 -4.00 -0.05 -25.45 16 8 C -0.12 -3.42 3.56 -10.08 -0.04 -3.46 16 9 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 10 C 0.08 2.32 7.21 72.65 0.52 2.84 16 11 O -0.39 -10.73 11.02 -148.98 -1.64 -12.37 16 12 C 0.07 1.57 4.16 31.06 0.13 1.70 16 13 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 14 C -0.16 -2.97 9.44 71.98 0.68 -2.29 16 15 C -0.13 -3.27 5.65 31.86 0.18 -3.09 16 16 N -0.46 -16.41 7.37 -54.81 -0.40 -16.81 16 17 H 0.45 14.16 8.96 -213.28 -1.91 12.25 16 18 N -0.34 -12.62 3.63 -337.50 -1.23 -13.84 16 19 C 0.27 10.81 5.93 85.63 0.51 11.32 16 20 C -0.56 -25.84 9.39 25.60 0.24 -25.60 16 21 H 0.06 2.76 7.81 -2.91 -0.02 2.74 16 22 C 0.03 1.54 5.46 84.65 0.46 2.00 16 23 N -0.91 -44.91 13.29 21.45 0.28 -44.62 16 24 Si 0.96 38.09 29.54 68.60 2.03 40.12 16 25 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 26 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 27 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 28 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.08 2.13 7.14 -2.39 -0.02 2.12 16 30 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.18 6.88 5.77 -2.91 -0.02 6.86 16 32 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.04 1.37 8.02 -2.39 -0.02 1.35 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 37 H 0.07 2.07 7.19 -2.39 -0.02 2.05 16 38 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.07 2.89 7.18 -2.38 -0.02 2.87 16 41 H 0.27 12.86 8.31 -92.71 -0.77 12.09 16 Total: -1.00 -58.61 343.45 0.48 -58.13 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: -0.87 Total: 31.59 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 5.60 Total: 13.98 kcal Atomic # 7 Polarization: -101.41 SS G_CDS: -4.58 Total: -105.99 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -1.69 Total: -37.82 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Total: -58.61 0.48 -58.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353477792.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.655 kcal (2) G-P(sol) polarization free energy of solvation -58.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds